RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:21:17 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/2_msa/P67775_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/3_mltree/P67775.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805677 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/2_msa/P67775_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 309 sites WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and sp_P23696_PP2A_DROME_7227 are exactly identical! WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and tr_B4HYB2_B4HYB2_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and tr_B5DIG8_B5DIG8_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and tr_B3MV12_B3MV12_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and tr_B4G9I0_B4G9I0_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4Q5U3_B4Q5U3_DROSI_7240 and tr_A0A1W4VW29_A0A1W4VW29_DROFC_30025 are exactly identical! WARNING: Sequences tr_Q803G3_Q803G3_DANRE_7955 and tr_A0A0P7Y7K0_A0A0P7Y7K0_9TELE_113540 are exactly identical! WARNING: Sequences sp_P48463_PP2AA_CHICK_9031 and tr_A0A226MUA0_A0A226MUA0_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48463_PP2AA_CHICK_9031 and tr_A0A226P643_A0A226P643_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_G1KB14_G1KB14_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_H0YSR6_H0YSR6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_A0A0Q3M3F8_A0A0Q3M3F8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_A0A091I1P1_A0A091I1P1_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_A0A1V4KV36_A0A1V4KV36_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q5ZM47_Q5ZM47_CHICK_9031 and tr_A0A218V311_A0A218V311_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q9HFQ2_PP2A1_EMENI_227321 and tr_A0A395H0X1_A0A395H0X1_9EURO_1448316 are exactly identical! WARNING: Sequences tr_A0A0D1DW54_A0A0D1DW54_USTMA_237631 and tr_E6ZMW9_E6ZMW9_SPORE_999809 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_G1RMV5_G1RMV5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_G3RDM5_G3RDM5_GORGO_9595 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_F6X958_F6X958_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_K7D798_K7D798_PANTR_9598 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_F7AEP1_F7AEP1_HORSE_9796 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and sp_P62716_PP2AB_RAT_10116 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and sp_P62714_PP2AB_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_F7HSM1_F7HSM1_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_U3EWF1_U3EWF1_CALJA_9483 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_F1RX68_F1RX68_PIG_9823 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_L5KAR1_L5KAR1_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_M3X2E6_M3X2E6_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A096MUB1_A0A096MUB1_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A0D9RTG3_A0A0D9RTG3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2K5KNX9_A0A2K5KNX9_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2K6DVP6_A0A2K6DVP6_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2U3WHU7_A0A2U3WHU7_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2Y9J139_A0A2Y9J139_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2Y9MWR6_A0A2Y9MWR6_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62715_PP2AB_MOUSE_10090 and tr_A0A2Y9T8C8_A0A2Y9T8C8_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P63330_PP2AA_MOUSE_10090 and sp_P63331_PP2AA_RAT_10116 are exactly identical! WARNING: Sequences sp_P63330_PP2AA_MOUSE_10090 and tr_A0A1U7QHY3_A0A1U7QHY3_MESAU_10036 are exactly identical! WARNING: Sequences tr_W5JPS4_W5JPS4_ANODA_43151 and tr_A0A084VQ06_A0A084VQ06_ANOSI_74873 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2I3HD34_A0A2I3HD34_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_G3QDL0_G3QDL0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and sp_P67777_PP2AA_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_K7DAZ4_K7DAZ4_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_F6U7A6_F6U7A6_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_I3MFR0_I3MFR0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_H0X130_H0X130_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A286XFP0_A0A286XFP0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and sp_P67775_PP2AA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_F7H808_F7H808_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_G5BN12_G5BN12_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_G3THP9_G3THP9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_G3WVY5_G3WVY5_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_F6XZ20_F6XZ20_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and sp_P67776_PP2AA_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_G1MHI6_G1MHI6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and sp_P67774_PP2AA_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_L5JVK6_L5JVK6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2I2V1P8_A0A2I2V1P8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A096N3J6_A0A096N3J6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A0D9RMF0_A0A0D9RMF0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A1S2ZIP5_A0A1S2ZIP5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A1S3GCJ9_A0A1S3GCJ9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A1U7U1V7_A0A1U7U1V7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2K5N6H8_A0A2K5N6H8_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2K6DZW6_A0A2K6DZW6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2U3WAV8_A0A2U3WAV8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2Y9E1R9_A0A2Y9E1R9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YFI5_M3YFI5_MUSPF_9669 and tr_A0A2Y9IK68_A0A2Y9IK68_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A3B3H7N1_A0A3B3H7N1_ORYLA_8090 and tr_A0A2I4AIW1_A0A2I4AIW1_9TELE_52670 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_B2WGG6_B2WGG6_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_M2TM42_M2TM42_COCSN_665912 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_W6YSZ4_W6YSZ4_COCCA_930089 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_W6ZLD9_W6ZLD9_COCMI_930090 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_A0A177DL55_A0A177DL55_ALTAL_5599 are exactly identical! WARNING: Sequences tr_E3S1H9_E3S1H9_PYRTT_861557 and tr_A0A178EF21_A0A178EF21_9PLEO_765867 are exactly identical! WARNING: Sequences tr_B4JBI4_B4JBI4_DROGR_7222 and tr_B4LTW5_B4LTW5_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JBI4_B4JBI4_DROGR_7222 and tr_B4KHW9_B4KHW9_DROMO_7230 are exactly identical! WARNING: Sequences tr_L7N1P0_L7N1P0_MYOLU_59463 and tr_G8F3X7_G8F3X7_MACFA_9541 are exactly identical! WARNING: Sequences tr_L7N1P0_L7N1P0_MYOLU_59463 and tr_A0A091F097_A0A091F097_CORBR_85066 are exactly identical! WARNING: Sequences tr_L7N1P0_L7N1P0_MYOLU_59463 and tr_A0A093SFT3_A0A093SFT3_9PASS_328815 are exactly identical! WARNING: Sequences tr_B0D5K2_B0D5K2_LACBS_486041 and tr_A0A0C9WW65_A0A0C9WW65_9AGAR_1095629 are exactly identical! WARNING: Sequences tr_D8S0V9_D8S0V9_SELML_88036 and tr_D8SBI6_D8SBI6_SELML_88036 are exactly identical! WARNING: Sequences tr_G2WQA0_G2WQA0_VERDV_498257 and tr_C9S7T8_C9S7T8_VERA1_526221 are exactly identical! WARNING: Sequences tr_G2WQA0_G2WQA0_VERDV_498257 and tr_A0A0G4MH54_A0A0G4MH54_9PEZI_100787 are exactly identical! WARNING: Sequences tr_C0NRT5_C0NRT5_AJECG_447093 and tr_F0UVR6_F0UVR6_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NRT5_C0NRT5_AJECG_447093 and tr_A6R5R1_A6R5R1_AJECN_339724 are exactly identical! WARNING: Sequences tr_B8PAD2_B8PAD2_POSPM_561896 and tr_A0A1X6MR02_A0A1X6MR02_9APHY_670580 are exactly identical! WARNING: Sequences sp_P48580_PP2A1_NEUCR_367110 and tr_G4UI47_G4UI47_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8N5U3_B8N5U3_ASPFN_332952 and tr_Q2UDJ0_Q2UDJ0_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N5U3_B8N5U3_ASPFN_332952 and tr_A0A0F0IDG7_A0A0F0IDG7_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8N5U3_B8N5U3_ASPFN_332952 and tr_A0A1S9DPH3_A0A1S9DPH3_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8N5U3_B8N5U3_ASPFN_332952 and tr_A0A2G7FGN2_A0A2G7FGN2_9EURO_656916 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_A0A2H2HX32_A0A2H2HX32_CAEJA_281687 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_G0PNM7_G0PNM7_CAEBE_135651 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_E3MSR9_E3MSR9_CAERE_31234 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_A8X0Q9_A8X0Q9_CAEBR_6238 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_A0A1I7U7D9_A0A1I7U7D9_9PELO_1561998 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_A0A261CDW3_A0A261CDW3_9PELO_1503980 are exactly identical! WARNING: Sequences sp_G5EGK8_PP2A_CAEEL_6239 and tr_A0A2G5U5D6_A0A2G5U5D6_9PELO_1611254 are exactly identical! WARNING: Sequences tr_C5GQQ9_C5GQQ9_AJEDR_559297 and tr_A0A1B7P394_A0A1B7P394_9EURO_1658172 are exactly identical! WARNING: Sequences tr_C5GQQ9_C5GQQ9_AJEDR_559297 and tr_A0A1J9QNZ7_A0A1J9QNZ7_9EURO_1447872 are exactly identical! WARNING: Sequences tr_C5GQQ9_C5GQQ9_AJEDR_559297 and tr_A0A2B7WVV0_A0A2B7WVV0_9EURO_2060905 are exactly identical! WARNING: Sequences tr_Q5KGH3_Q5KGH3_CRYNJ_214684 and tr_E6R7A8_E6R7A8_CRYGW_367775 are exactly identical! WARNING: Sequences tr_Q5KGH3_Q5KGH3_CRYNJ_214684 and tr_A0A095ERL4_A0A095ERL4_CRYGR_294750 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_H0ZUJ3_H0ZUJ3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_U3JZR2_U3JZR2_FICAL_59894 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A091F8W9_A0A091F8W9_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A093PSX3_A0A093PSX3_9PASS_328815 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A091W3N7_A0A091W3N7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A087RF32_A0A087RF32_APTFO_9233 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A093GTC5_A0A093GTC5_STRCA_441894 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A091WJS6_A0A091WJS6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A091FHJ6_A0A091FHJ6_9AVES_55661 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A0A0A0U3_A0A0A0A0U3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F6U210_F6U210_HORSE_9796 and tr_A0A2K5YGE7_A0A2K5YGE7_MANLE_9568 are exactly identical! WARNING: Sequences tr_E9EYG3_E9EYG3_METRA_655844 and tr_A0A0B4I2B6_A0A0B4I2B6_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9EYG3_E9EYG3_METRA_655844 and tr_A0A0D9P5U3_A0A0D9P5U3_METAN_1291518 are exactly identical! WARNING: Sequences tr_Q4WM81_Q4WM81_ASPFU_330879 and tr_A0A229YY55_A0A229YY55_9EURO_1245748 are exactly identical! WARNING: Sequences tr_Q4WM81_Q4WM81_ASPFU_330879 and tr_A0A397H573_A0A397H573_9EURO_41047 are exactly identical! WARNING: Sequences tr_E5R284_E5R284_ARTGP_535722 and tr_F2T0I6_F2T0I6_TRIRC_559305 are exactly identical! WARNING: Sequences tr_E5R284_E5R284_ARTGP_535722 and tr_F2Q584_F2Q584_TRIEC_559882 are exactly identical! WARNING: Sequences tr_E5R284_E5R284_ARTGP_535722 and tr_A0A178F844_A0A178F844_TRIRU_5551 are exactly identical! WARNING: Sequences tr_J5K3E3_J5K3E3_BEAB2_655819 and tr_A0A0A2VWH0_A0A0A2VWH0_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J5K3E3_J5K3E3_BEAB2_655819 and tr_A0A167UAD6_A0A167UAD6_9HYPO_1081104 are exactly identical! WARNING: Sequences tr_J5K3E3_J5K3E3_BEAB2_655819 and tr_A0A167FVP6_A0A167FVP6_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J5K3E3_J5K3E3_BEAB2_655819 and tr_A0A162KMX9_A0A162KMX9_CORDF_1081108 are exactly identical! WARNING: Sequences tr_A0A3B5QHM2_A0A3B5QHM2_XIPMA_8083 and tr_A0A087YD31_A0A087YD31_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A4L5_M4A4L5_XIPMA_8083 and tr_A0A087Y1S8_A0A087Y1S8_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q6VUQ5_Q6VUQ5_SOLLC_4081 and tr_M1A307_M1A307_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A088A299_A0A088A299_APIME_7460 and tr_A0A2A3EAK5_A0A2A3EAK5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A180GCH6_A0A180GCH6_PUCT1_630390 and tr_E3KEF3_E3KEF3_PUCGT_418459 are exactly identical! WARNING: Sequences tr_A0A180GCH6_A0A180GCH6_PUCT1_630390 and tr_A0A0L0UU62_A0A0L0UU62_9BASI_1165861 are exactly identical! WARNING: Sequences tr_G9P1M3_G9P1M3_HYPAI_452589 and tr_G0R9U0_G0R9U0_HYPJQ_431241 are exactly identical! WARNING: Sequences tr_G9P1M3_G9P1M3_HYPAI_452589 and tr_A0A2P4ZDP8_A0A2P4ZDP8_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9P1M3_G9P1M3_HYPAI_452589 and tr_A0A2T3ZLI5_A0A2T3ZLI5_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_G9P1M3_G9P1M3_HYPAI_452589 and tr_A0A2T4CG88_A0A2T4CG88_TRILO_983965 are exactly identical! WARNING: Sequences sp_Q07098_PP2A2_ARATH_3702 and tr_R0GLY1_R0GLY1_9BRAS_81985 are exactly identical! WARNING: Sequences tr_A0A0E0GHB5_A0A0E0GHB5_ORYNI_4536 and tr_A0A0E0NQ74_A0A0E0NQ74_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GHB5_A0A0E0GHB5_ORYNI_4536 and tr_A0A0D3FE99_A0A0D3FE99_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GHB5_A0A0E0GHB5_ORYNI_4536 and tr_A0A0D9Z2K2_A0A0D9Z2K2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GHB5_A0A0E0GHB5_ORYNI_4536 and tr_A0A0E0K994_A0A0E0K994_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0GHB5_A0A0E0GHB5_ORYNI_4536 and tr_Q10R90_Q10R90_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HST6_A0A0E0HST6_ORYNI_4536 and sp_A2YEB4_PP2A1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HST6_A0A0E0HST6_ORYNI_4536 and tr_A0A0E0E347_A0A0E0E347_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0HST6_A0A0E0HST6_ORYNI_4536 and tr_A0A0E0PZG1_A0A0E0PZG1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0HST6_A0A0E0HST6_ORYNI_4536 and sp_Q0DBD3_PP2A1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and sp_A2X2G3_PP2A3_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and tr_A0A0E0CHZ5_A0A0E0CHZ5_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and tr_A0A0E0NBR3_A0A0E0NBR3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and tr_A0A0D3F2H3_A0A0D3F2H3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and tr_A0A0D9YPC2_A0A0D9YPC2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0IY83_A0A0E0IY83_ORYNI_4536 and sp_Q0E2S4_PP2A3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0H5SJL1_A0A0H5SJL1_BRUMA_6279 and tr_A0A0N4SXR6_A0A0N4SXR6_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_G7XB64_G7XB64_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_G3YBK9_G3YBK9_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A0U5G2L0_A0A0U5G2L0_9EURO_454130 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A100IIP7_A0A100IIP7_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A146F8Y7_A0A146F8Y7_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A1L9V0P6_A0A1L9V0P6_9EURO_767769 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A1L9X797_A0A1L9X797_ASPAC_690307 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A317UNA0_A0A317UNA0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A317V2Z9_A0A317V2Z9_9EURO_1448321 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A319A0Q6_A0A319A0Q6_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A319D6N8_A0A319D6N8_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A318Z4P9_A0A318Z4P9_9EURO_1450539 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A319EUX5_A0A319EUX5_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A2V5I5H3_A0A2V5I5H3_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A395IC79_A0A395IC79_9EURO_1450537 are exactly identical! WARNING: Sequences tr_A5ABH7_A5ABH7_ASPNC_425011 and tr_A0A2V5HH76_A0A2V5HH76_9EURO_1450538 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A091JI43_A0A091JI43_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A087R120_A0A087R120_APTFO_9233 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A093KBG1_A0A093KBG1_STRCA_441894 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A099Z1T7_A0A099Z1T7_TINGU_94827 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A0A0ALQ4_A0A0A0ALQ4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A093G148_A0A093G148_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A091I4Z5_A0A091I4Z5_CALAN_9244 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A2K5Z183_A0A2K5Z183_MANLE_9568 are exactly identical! WARNING: Sequences tr_G5C9Y7_G5C9Y7_HETGA_10181 and tr_A0A2R9B5R3_A0A2R9B5R3_PANPA_9597 are exactly identical! WARNING: Sequences tr_E5SIY4_E5SIY4_TRISP_6334 and tr_A0A0V1KWU6_A0A0V1KWU6_9BILA_6335 are exactly identical! WARNING: Sequences tr_G9MSB7_G9MSB7_HYPVG_413071 and tr_Q1PBU2_Q1PBU2_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MSB7_G9MSB7_HYPVG_413071 and tr_A0A2T4AV97_A0A2T4AV97_TRIHA_983964 are exactly identical! WARNING: Sequences tr_H1V1W9_H1V1W9_COLHI_759273 and tr_E3QIQ7_E3QIQ7_COLGM_645133 are exactly identical! WARNING: Sequences tr_H1V1W9_H1V1W9_COLHI_759273 and tr_A0A010QB46_A0A010QB46_9PEZI_1445577 are exactly identical! WARNING: Sequences tr_H1V1W9_H1V1W9_COLHI_759273 and tr_A0A066XPP2_A0A066XPP2_COLSU_1173701 are exactly identical! WARNING: Sequences tr_H1V1W9_H1V1W9_COLHI_759273 and tr_A0A166VUV7_A0A166VUV7_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1V1W9_H1V1W9_COLHI_759273 and tr_A0A1G4BLK3_A0A1G4BLK3_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_I1QUE7_I1QUE7_ORYGL_4538 and sp_A3C4N5_PP2A4_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_Q6GLE6_Q6GLE6_XENTR_8364 and tr_Q92140_Q92140_XENLA_8355 are exactly identical! WARNING: Sequences tr_G2YLZ3_G2YLZ3_BOTF4_999810 and tr_M7TSX2_M7TSX2_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_G1L4A1_G1L4A1_AILME_9646 and tr_A0A2U3XJS7_A0A2U3XJS7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A0D2XW77_A0A0D2XW77_FUSO4_426428 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_S0DNH5_S0DNH5_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_N4U2K9_N4U2K9_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_X0BSE2_X0BSE2_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_I1RZH4_I1RZH4_GIBZE_229533 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A1B8AFI0_A0A1B8AFI0_FUSPO_36050 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A2H3THB3_A0A2H3THB3_FUSOX_5507 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A2H3HUK5_A0A2H3HUK5_FUSOX_327505 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A2K0W0B9_A0A2K0W0B9_GIBNY_42673 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A2L2SWE4_A0A2L2SWE4_9HYPO_56646 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A365N7Z8_A0A365N7Z8_GIBIN_948311 are exactly identical! WARNING: Sequences tr_W7MDP0_W7MDP0_GIBM7_334819 and tr_A0A366RKE0_A0A366RKE0_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_L2GFM6_L2GFM6_COLFN_1213859 and tr_N4VHV9_N4VHV9_COLOR_1213857 are exactly identical! WARNING: Sequences tr_L2GFM6_L2GFM6_COLFN_1213859 and tr_T0LVV7_T0LVV7_COLGC_1237896 are exactly identical! WARNING: Sequences tr_L2GFM6_L2GFM6_COLFN_1213859 and tr_A0A161WMR1_A0A161WMR1_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_M4DIC0_M4DIC0_BRARP_51351 and tr_A0A078HPP5_A0A078HPP5_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4DK42_M4DK42_BRARP_51351 and tr_A0A078IDJ1_A0A078IDJ1_BRANA_3708 are exactly identical! WARNING: Sequences tr_S2K0M4_S2K0M4_MUCC1_1220926 and tr_A0A168Q6Q3_A0A168Q6Q3_MUCCL_747725 are exactly identical! WARNING: Sequences tr_R0IPZ3_R0IPZ3_SETT2_671987 and tr_M2UPG7_M2UPG7_COCH5_701091 are exactly identical! WARNING: Sequences tr_U5HD39_U5HD39_USTV1_683840 and tr_A0A2X0NWV4_A0A2X0NWV4_9BASI_796604 are exactly identical! WARNING: Sequences tr_W5MVW9_W5MVW9_LEPOC_7918 and tr_A0A1L8GR14_A0A1L8GR14_XENLA_8355 are exactly identical! WARNING: Sequences tr_W2Q8W7_W2Q8W7_PHYPN_761204 and tr_A0A0W8CXG2_A0A0W8CXG2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q8W7_W2Q8W7_PHYPN_761204 and tr_W2L7R1_W2L7R1_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2Q8W7_W2Q8W7_PHYPN_761204 and tr_A0A329SQT5_A0A329SQT5_9STRA_29920 are exactly identical! WARNING: Sequences tr_S7ZWA5_S7ZWA5_PENO1_933388 and tr_A0A0F7TRK0_A0A0F7TRK0_9EURO_104259 are exactly identical! WARNING: Sequences tr_S7ZWA5_S7ZWA5_PENO1_933388 and tr_A0A1F5LQK1_A0A1F5LQK1_9EURO_1835702 are exactly identical! WARNING: Sequences tr_S7ZWA5_S7ZWA5_PENO1_933388 and tr_A0A1L9SCN2_A0A1L9SCN2_9EURO_1073090 are exactly identical! WARNING: Sequences tr_S7ZWA5_S7ZWA5_PENO1_933388 and tr_A0A1V6TMS5_A0A1V6TMS5_9EURO_303698 are exactly identical! WARNING: Sequences tr_W9X537_W9X537_9EURO_1182543 and tr_A0A0D2K707_A0A0D2K707_9EURO_1442371 are exactly identical! WARNING: Sequences tr_W9X537_W9X537_9EURO_1182543 and tr_A0A0D2CSZ1_A0A0D2CSZ1_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A017SHW8_A0A017SHW8_9EURO_1388766 and tr_A0A1L9VWI3_A0A1L9VWI3_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A015JRU7_A0A015JRU7_9GLOM_1432141 and tr_A0A2I1GL23_A0A2I1GL23_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JRU7_A0A015JRU7_9GLOM_1432141 and tr_U9UC84_U9UC84_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A044SJ83_A0A044SJ83_ONCVO_6282 and tr_A0A0N4TQF9_A0A0N4TQF9_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A2K6W2X4_A0A2K6W2X4_ONCVO_6282 and tr_A0A182E1S2_A0A182E1S2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067R4M1_A0A067R4M1_ZOONE_136037 and tr_A0A2J7QGM9_A0A2J7QGM9_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A074WFA0_A0A074WFA0_9PEZI_1043004 and tr_A0A074WKJ4_A0A074WKJ4_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A084QV35_A0A084QV35_STAC4_1283841 and tr_A0A084RRN5_A0A084RRN5_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A078FK70_A0A078FK70_BRANA_3708 and tr_A0A0D3C5U8_A0A0D3C5U8_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078IRE4_A0A078IRE4_BRANA_3708 and tr_A0A0D3API0_A0A0D3API0_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094F1U8_A0A094F1U8_9PEZI_1420912 and tr_A0A1B8GWR7_A0A1B8GWR7_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094F1U8_A0A094F1U8_9PEZI_1420912 and tr_A0A1B8CB81_A0A1B8CB81_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A094F1U8_A0A094F1U8_9PEZI_1420912 and tr_A0A1B8EVJ0_A0A1B8EVJ0_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A0A0KDJ6_A0A0A0KDJ6_CUCSA_3659 and tr_A0A1S3CME3_A0A1S3CME3_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_W6Q4Z2_W6Q4Z2_PENRF_1365484 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A0M9WFB5_A0A0M9WFB5_9EURO_229535 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A0G4PPH3_A0A0G4PPH3_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A101MAL3_A0A101MAL3_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A1V6RMH3_A0A1V6RMH3_9EURO_29845 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A1V6R9B6_A0A1V6R9B6_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0A2I8D4_A0A0A2I8D4_PENEN_27334 and tr_A0A1V6YF56_A0A1V6YF56_PENNA_60175 are exactly identical! WARNING: Sequences tr_A0A0D2MAZ2_A0A0D2MAZ2_GOSRA_29730 and tr_A0A1U8L3S5_A0A1U8L3S5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2T2Y7_A0A0D2T2Y7_GOSRA_29730 and tr_A0A1U8MMM6_A0A1U8MMM6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2U1Z6_A0A0D2U1Z6_GOSRA_29730 and tr_A0A1U8NJZ4_A0A1U8NJZ4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8XJT8_A0A0F8XJT8_9EURO_308745 and tr_A0A2T5LTQ4_A0A2T5LTQ4_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0EYD1_A0A0K0EYD1_STRVS_75913 and tr_A0A0N5BJF9_A0A0N5BJF9_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0DSM1_A0A0K0DSM1_STRER_6248 and tr_A0A090L696_A0A090L696_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0A1NDQ8_A0A0A1NDQ8_9FUNG_58291 and tr_A0A2G4SY52_A0A2G4SY52_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1NDQ8_A0A0A1NDQ8_9FUNG_58291 and tr_A0A367JC76_A0A367JC76_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0Q3X941_A0A0Q3X941_AMAAE_12930 and tr_A0A091WK01_A0A091WK01_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3X941_A0A0Q3X941_AMAAE_12930 and tr_A0A091GDJ2_A0A091GDJ2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3X941_A0A0Q3X941_AMAAE_12930 and tr_R7VYD0_R7VYD0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3X941_A0A0Q3X941_AMAAE_12930 and tr_A0A218UNB1_A0A218UNB1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0D2F5I8_A0A0D2F5I8_9EURO_1442368 and tr_A0A178ZYF2_A0A178ZYF2_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A0L9TCV4_A0A0L9TCV4_PHAAN_3914 and tr_A0A1S3UT00_A0A1S3UT00_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0L9TFW6_A0A0L9TFW6_PHAAN_3914 and tr_A0A1S3T9T8_A0A1S3T9T8_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0D2BSH9_A0A0D2BSH9_9EURO_91928 and tr_A0A0D2DAK5_A0A0D2DAK5_9EURO_215243 are exactly identical! WARNING: Sequences tr_A0A0D2BSH9_A0A0D2BSH9_9EURO_91928 and tr_A0A0D1XGJ4_A0A0D1XGJ4_9EURO_1016849 are exactly identical! WARNING: Sequences tr_A0A0D2BSH9_A0A0D2BSH9_9EURO_91928 and tr_A0A0D2F0L7_A0A0D2F0L7_9EURO_348802 are exactly identical! WARNING: Sequences tr_A0A099ZGU6_A0A099ZGU6_TINGU_94827 and tr_A0A093I3B1_A0A093I3B1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0C9ME00_A0A0C9ME00_9FUNG_91626 and tr_A0A168Q5J9_A0A168Q5J9_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A0V0RY86_A0A0V0RY86_9BILA_6336 and tr_A0A0V1D3D8_A0A0V1D3D8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RY86_A0A0V0RY86_9BILA_6336 and tr_A0A0V0WJP2_A0A0V0WJP2_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RY86_A0A0V0RY86_9BILA_6336 and tr_A0A0V0Z6Y1_A0A0V0Z6Y1_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RY86_A0A0V0RY86_9BILA_6336 and tr_A0A0V1NH88_A0A0V1NH88_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RY86_A0A0V0RY86_9BILA_6336 and tr_A0A0V0T9F4_A0A0V0T9F4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0P1BNM2_A0A0P1BNM2_9BASI_401625 and tr_A0A316VW87_A0A316VW87_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A137QC27_A0A137QC27_9AGAR_1714833 and tr_A0A137R0H0_A0A137R0H0_9AGAR_1714833 are exactly identical! WARNING: Sequences tr_A0A151XDL3_A0A151XDL3_9HYME_64791 and tr_A0A151I4P7_A0A151I4P7_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A151XDL3_A0A151XDL3_9HYME_64791 and tr_A0A151IL48_A0A151IL48_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A164TFS6_A0A164TFS6_9HOMO_1314777 and tr_A0A166G2D4_A0A166G2D4_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1A6A0Q9_A0A1A6A0Q9_9TREE_1296121 and tr_A0A1B9FXX4_A0A1B9FXX4_9TREE_1296100 are exactly identical! WARNING: Sequences tr_A0A1A6A0Q9_A0A1A6A0Q9_9TREE_1296121 and tr_A0A1B9I3Z5_A0A1B9I3Z5_9TREE_1296096 are exactly identical! WARNING: Sequences tr_A0A1S3XT17_A0A1S3XT17_TOBAC_4097 and tr_A0A1J6HZ97_A0A1J6HZ97_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3XT17_A0A1S3XT17_TOBAC_4097 and tr_A0A1U7YAV3_A0A1U7YAV3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Z5M2_A0A1S3Z5M2_TOBAC_4097 and tr_A0A1J6JTA0_A0A1J6JTA0_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3Z5M2_A0A1S3Z5M2_TOBAC_4097 and tr_A0A1U7Y741_A0A1U7Y741_NICSY_4096 are exactly identical! WARNING: Sequences tr_C0H9N7_C0H9N7_SALSA_8030 and tr_A0A060YNN1_A0A060YNN1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B7MWG3_A0A1B7MWG3_9HOMO_1314800 and tr_A0A1J8Q8X3_A0A1J8Q8X3_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1L9PJY3_A0A1L9PJY3_ASPVE_1036611 and tr_A0A319EXY1_A0A319EXY1_9EURO_1448320 are exactly identical! WARNING: Sequences tr_A0A1R3RXN7_A0A1R3RXN7_ASPC5_602072 and tr_A0A317X0M1_A0A317X0M1_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A2I4C1J7_A0A2I4C1J7_9TELE_52670 and tr_A0A2U9B831_A0A2U9B831_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1V8U496_A0A1V8U496_9PEZI_1974281 and tr_A0A1V8T2W5_A0A1V8T2W5_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8U496_A0A1V8U496_9PEZI_1974281 and tr_A0A1V8TDI2_A0A1V8TDI2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3E817_A0A2H3E817_ARMGA_47427 and tr_A0A2H3C8X1_A0A2H3C8X1_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A1U8EUU3_A0A1U8EUU3_CAPAN_4072 and tr_A0A2G3B8C5_A0A2G3B8C5_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8GDF9_A0A1U8GDF9_CAPAN_4072 and tr_A0A2G3DFT0_A0A2G3DFT0_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8GNX1_A0A1U8GNX1_CAPAN_4072 and tr_A0A2G3CGL0_A0A2G3CGL0_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G5HB13_A0A2G5HB13_CERBT_122368 and tr_A0A2S6CJR8_A0A2S6CJR8_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2I2F4N9_A0A2I2F4N9_9EURO_41067 and tr_A0A2J5I219_A0A2J5I219_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A2J6TIH8_A0A2J6TIH8_9HELO_1095630 and tr_A0A2J6RC28_A0A2J6RC28_9HELO_1149755 are exactly identical! WARNING: Sequences tr_A0A2S7NPA3_A0A2S7NPA3_9HELO_2070414 and tr_A0A2S7P7L3_A0A2S7P7L3_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2U3V1J5_A0A2U3V1J5_TURTR_9739 and tr_A0A2Y9PGY2_A0A2Y9PGY2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V1J5_A0A2U3V1J5_TURTR_9739 and tr_A0A2Y9F2F6_A0A2Y9F2F6_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 295 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.reduced.phy Alignment comprises 1 partitions and 309 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 309 Gaps: 1.11 % Invariant sites: 21.68 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/3_mltree/P67775.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 78 / 6240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -37496.912753 [00:00:00 -37496.912753] Initial branch length optimization [00:00:01 -28575.839820] Model parameter optimization (eps = 0.100000) [00:00:47] Tree #1, final logLikelihood: -28158.347667 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.399647,0.270154) (0.396762,0.478730) (0.155042,1.774727) (0.048548,8.794088) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P67775/4_raxmlng_ancestral/P67775.raxml.log Analysis started: 04-Jun-2021 14:21:17 / finished: 04-Jun-2021 14:22:08 Elapsed time: 50.052 seconds