RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jun-2021 01:25:14 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/2_msa/P63000_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/2_msa/P63000_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 174 sites WARNING: Sequences tr_B4QKE8_B4QKE8_DROSI_7240 and sp_P48554_RAC2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QKE8_B4QKE8_DROSI_7240 and tr_B4HV68_B4HV68_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and sp_P40792_RAC1_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and tr_B4HVR1_B4HVR1_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and tr_Q29EV6_Q29EV6_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and tr_B4LG76_B4LG76_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and tr_B4L0N4_B4L0N4_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QLZ5_B4QLZ5_DROSI_7240 and tr_A0A1W4W6P4_A0A1W4W6P4_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9FRC3_E9FRC3_DAPPU_6669 and tr_A0A0P5IN29_A0A0P5IN29_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A158NSH9_A0A158NSH9_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_F4WFL0_F4WFL0_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_E2BW21_E2BW21_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A151WI97_A0A151WI97_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A151J446_A0A151J446_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A151HYZ1_A0A151HYZ1_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A195FT76_A0A195FT76_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AAI7_E2AAI7_CAMFO_104421 and tr_A0A195CS85_A0A195CS85_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A0B4J2P8_A0A0B4J2P8_APIME_7460 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A158P3W9_A0A158P3W9_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_F4WKU9_F4WKU9_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_E2BNN7_E2BNN7_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A026VYH3_A0A026VYH3_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A0L7QPF8_A0A0L7QPF8_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A151WV46_A0A151WV46_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A151J934_A0A151J934_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A195BKS3_A0A195BKS3_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A151JVR7_A0A151JVR7_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AUD8_E2AUD8_CAMFO_104421 and tr_A0A195CN57_A0A195CN57_9HYME_456900 are exactly identical! WARNING: Sequences tr_A9JRY8_A9JRY8_DANRE_7955 and tr_A0A3B1J4P1_A0A3B1J4P1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q6DGB7_Q6DGB7_DANRE_7955 and tr_A0A3B1IUD7_A0A3B1IUD7_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q6DGB7_Q6DGB7_DANRE_7955 and tr_W5N3M1_W5N3M1_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_G1KJU4_G1KJU4_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_F6THF0_F6THF0_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_G3VWQ1_G3VWQ1_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A151M7Q4_A0A151M7Q4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A0Q3MF62_A0A0Q3MF62_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A091IMI5_A0A091IMI5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A093S8N1_A0A093S8N1_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A091V5Y4_A0A091V5Y4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A087R2C8_A0A087R2C8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A093H930_A0A093H930_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A091V7A0_A0A091V7A0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A099ZBB6_A0A099ZBB6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A091FZT8_A0A091FZT8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A0A0A9V0_A0A0A0A9V0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A093G8C0_A0A093G8C0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PZA2_A0A1D5PZA2_CHICK_9031 and tr_A0A091I254_A0A091I254_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_G1NIZ5_G1NIZ5_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_H0ZK63_H0ZK63_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_U3KEL2_U3KEL2_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_D2Y3F5_D2Y3F5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_A0A093QLT7_A0A093QLT7_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_A0A093GFA9_A0A093GFA9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q5F337_Q5F337_CHICK_9031 and tr_A0A218UZY4_A0A218UZY4_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and sp_P63001_RAC1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_G1PEA6_G1PEA6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2I2YGX5_A0A2I2YGX5_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_H2PLF7_H2PLF7_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_G1N850_G1N850_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_H9GJG3_H9GJG3_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_G1SY93_G1SY93_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_F1PYQ1_F1PYQ1_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and sp_P62999_RAC1_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2I3RVA9_A0A2I3RVA9_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_F6RQE2_F6RQE2_ORNAN_9258 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_F7GIH5_F7GIH5_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_F6Z0A9_F6Z0A9_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_W5NVC9_W5NVC9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and sp_Q6RUV5_RAC1_RAT_10116 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_I3M8I6_I3M8I6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A286XA98_A0A286XA98_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and sp_P63000_RAC1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_G5BF40_G5BF40_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_K7G1G6_K7G1G6_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_G3WBW9_G3WBW9_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_H0ZEX5_H0ZEX5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_Q6GL60_Q6GL60_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_U3BVZ6_U3BVZ6_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A287B4G4_A0A287B4G4_PIG_9823 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_F1MNG3_F1MNG3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and sp_P62998_RAC1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_L5L1D0_L5L1D0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_M3WEZ2_M3WEZ2_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_U3KHU1_U3KHU1_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_U3I729_U3I729_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_W5KNM1_W5KNM1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A096N159_A0A096N159_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A0D9RYP7_A0A0D9RYP7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A0P7UIP3_A0A0P7UIP3_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A151N1N8_A0A151N1N8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A0Q3U750_A0A0Q3U750_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091ERA4_A0A091ERA4_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091ISN8_A0A091ISN8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A093QK33_A0A093QK33_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091VAI9_A0A091VAI9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A087R6H3_A0A087R6H3_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A093I353_A0A093I353_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091W4F3_A0A091W4F3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A099YW30_A0A099YW30_TINGU_94827 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091GD96_A0A091GD96_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A099ZXP2_A0A099ZXP2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A093G481_A0A093G481_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A091J8B9_A0A091J8B9_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A1S3WDT0_A0A1S3WDT0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A3Q0EHW6_A0A3Q0EHW6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A3Q0GSJ5_A0A3Q0GSJ5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A3Q0D6L3_A0A3Q0D6L3_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A1V4KS38_A0A1V4KS38_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A218V762_A0A218V762_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2K5LHE6_A0A2K5LHE6_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2K6D5T6_A0A2K6D5T6_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2K5XBY7_A0A2K5XBY7_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2R9AUG3_A0A2R9AUG3_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2U3VHE4_A0A2U3VHE4_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2U3YT13_A0A2U3YT13_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2Y9J9P1_A0A2Y9J9P1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2Y9PL77_A0A2Y9PL77_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A2Y9SJX5_A0A2Y9SJX5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A384CPH1_A0A384CPH1_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q6LC82_Q6LC82_CHICK_9031 and tr_A0A384AHH4_A0A384AHH4_BALAS_310752 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_G3R7I1_G3R7I1_GORGO_9595 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_M0R5T4_M0R5T4_RAT_10116 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_I3MM44_I3MM44_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_H0X6Z2_H0X6Z2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_H0VPQ4_H0VPQ4_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and sp_P60763_RAC3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_H9EQ53_H9EQ53_MACMU_9544 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_G5BJ91_G5BJ91_HETGA_10181 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_F6QDS2_F6QDS2_CALJA_9483 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A287ATV4_A0A287ATV4_PIG_9823 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_G1MG62_G1MG62_AILME_9646 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_G7PTB6_G7PTB6_MACFA_9541 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_F1MCR0_F1MCR0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A337SNI2_A0A337SNI2_FELCA_9685 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2I3LI56_A0A2I3LI56_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A091DUF1_A0A091DUF1_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A0D9S4S7_A0A0D9S4S7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A1S3WDR2_A0A1S3WDR2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A3Q0DI05_A0A3Q0DI05_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A1U7QNI6_A0A1U7QNI6_MESAU_10036 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2K6B9G9_A0A2K6B9G9_MACNE_9545 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2U3W8F5_A0A2U3W8F5_ODORO_9708 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2U3YHG9_A0A2U3YHG9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2Y9DGZ2_A0A2Y9DGZ2_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2Y9KY31_A0A2Y9KY31_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2Y9PDK4_A0A2Y9PDK4_DELLE_9749 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A2Y9T8K5_A0A2Y9T8K5_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P60764_RAC3_MOUSE_10090 and tr_A0A384AFC7_A0A384AFC7_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q05144_RAC2_MOUSE_10090 and tr_Q5U1Y2_Q5U1Y2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_E2RJH1_E2RJH1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_G1LTK5_G1LTK5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_M3X2X9_M3X2X9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_A0A2U3WP22_A0A2U3WP22_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_A0A2U3YFA7_A0A2U3YFA7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_A0A2Y9KL33_A0A2Y9KL33_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMN1_M3YMN1_MUSPF_9669 and tr_A0A384D9T5_A0A384D9T5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YYR6_M3YYR6_MUSPF_9669 and tr_G3GVB5_G3GVB5_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YYR6_M3YYR6_MUSPF_9669 and tr_A0A2Y9R6N8_A0A2Y9R6N8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q7JWS8_Q7JWS8_DROME_7227 and tr_B4IGU2_B4IGU2_DROSE_7238 are exactly identical! WARNING: Sequences tr_H2LBQ8_H2LBQ8_ORYLA_8090 and tr_M4AJW7_M4AJW7_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LBQ8_H2LBQ8_ORYLA_8090 and tr_H2SEG4_H2SEG4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LBQ8_H2LBQ8_ORYLA_8090 and tr_G3PRQ9_G3PRQ9_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LBQ8_H2LBQ8_ORYLA_8090 and tr_A0A096M462_A0A096M462_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LBQ8_H2LBQ8_ORYLA_8090 and tr_A0A2U9CKR1_A0A2U9CKR1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1A084_F1A084_DICPU_5786 and sp_P34144_RAC1A_DICDI_44689 are exactly identical! WARNING: Sequences tr_E3RN41_E3RN41_PYRTT_861557 and tr_B2WAR1_B2WAR1_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RN41_E3RN41_PYRTT_861557 and tr_A0A2W1IGX0_A0A2W1IGX0_9PLEO_45151 are exactly identical! WARNING: Sequences tr_B4J2E5_B4J2E5_DROGR_7222 and tr_B4N547_B4N547_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JRY0_B4JRY0_DROGR_7222 and tr_B4NAQ9_B4NAQ9_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JRY0_B4JRY0_DROGR_7222 and tr_B4M627_B4M627_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JRY0_B4JRY0_DROGR_7222 and tr_B4KB97_B4KB97_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4JRY0_B4JRY0_DROGR_7222 and tr_A0A0M3QXJ2_A0A0M3QXJ2_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A2I3HK33_A0A2I3HK33_NOMLE_61853 and tr_H2QLL8_H2QLL8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HK33_A0A2I3HK33_NOMLE_61853 and tr_A0A2K5LDR1_A0A2K5LDR1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S0K2_G1S0K2_NOMLE_61853 and tr_A0A1S3FQJ5_A0A1S3FQJ5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1S0K2_G1S0K2_NOMLE_61853 and tr_A0A226NJE6_A0A226NJE6_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1S0K2_G1S0K2_NOMLE_61853 and tr_A0A226PNX2_A0A226PNX2_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_H0WP94_H0WP94_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_A0A2R8N495_A0A2R8N495_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_I3LKU0_I3LKU0_PIG_9823 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and sp_Q9TU25_RAC2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_A0A1S2ZHE4_A0A1S2ZHE4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_A0A2Y9F0X9_A0A2Y9F0X9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PL19_G1PL19_MYOLU_59463 and tr_A0A383YS84_A0A383YS84_BALAS_310752 are exactly identical! WARNING: Sequences tr_B0CQ88_B0CQ88_LACBS_486041 and tr_A0A0C9Y9J3_A0A0C9Y9J3_9AGAR_1095629 are exactly identical! WARNING: Sequences tr_I9XJE9_I9XJE9_COCIM_246410 and tr_E9D4Q9_E9D4Q9_COCPS_443226 are exactly identical! WARNING: Sequences tr_I9XJE9_I9XJE9_COCIM_246410 and tr_A0A0J7ASN3_A0A0J7ASN3_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QT19_B6QT19_TALMQ_441960 and tr_A0A093VS59_A0A093VS59_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and sp_P15153_RAC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A1D5R605_A0A1D5R605_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_G7PFC9_G7PFC9_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A096NJW1_A0A096NJW1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A0D9R596_A0A0D9R596_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A2K5NB87_A0A2K5NB87_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A2K6C624_A0A2K6C624_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R4Y3_G3R4Y3_GORGO_9595 and tr_A0A2K5YSU8_A0A2K5YSU8_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2P4A5_H2P4A5_PONAB_9601 and tr_A0A2I3RXT4_A0A2I3RXT4_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2P4A5_H2P4A5_PONAB_9601 and tr_A0A2R9AFT4_A0A2R9AFT4_PANPA_9597 are exactly identical! WARNING: Sequences tr_C0NQ52_C0NQ52_AJECG_447093 and tr_F0UPU8_F0UPU8_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NQ52_C0NQ52_AJECG_447093 and tr_A6QUX7_A6QUX7_AJECN_339724 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_H0YZL9_H0YZL9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_U3KB73_U3KB73_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_U3J8P6_U3J8P6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_A0A091E8T4_A0A091E8T4_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_A0A1V4K511_A0A1V4K511_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1N107_G1N107_MELGA_9103 and tr_A0A218UKU6_A0A218UKU6_9PASE_299123 are exactly identical! WARNING: Sequences tr_B8P5C1_B8P5C1_POSPM_561896 and tr_A0A1X6NGB4_A0A1X6NGB4_9APHY_670580 are exactly identical! WARNING: Sequences tr_Q7RW05_Q7RW05_NEUCR_367110 and tr_G4U8K2_G4U8K2_NEUT9_510952 are exactly identical! WARNING: Sequences tr_G1TAX7_G1TAX7_RABIT_9986 and tr_F7AX30_F7AX30_HORSE_9796 are exactly identical! WARNING: Sequences tr_B5DQJ0_B5DQJ0_DROPS_46245 and tr_B4GUQ6_B4GUQ6_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29BH0_Q29BH0_DROPS_46245 and tr_B4GNY0_B4GNY0_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NUY7_B8NUY7_ASPFN_332952 and tr_A0A0F0IIV3_A0A0F0IIV3_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8NUY7_B8NUY7_ASPFN_332952 and tr_A0A1S9DIA1_A0A1S9DIA1_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8NUY7_B8NUY7_ASPFN_332952 and tr_A0A2G7FSS3_A0A2G7FSS3_9EURO_656916 are exactly identical! WARNING: Sequences sp_Q03206_RAC1_CAEEL_6239 and tr_A0A261A3C7_A0A261A3C7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_C5FZG6_C5FZG6_ARTOC_554155 and tr_F2SH18_F2SH18_TRIRC_559305 are exactly identical! WARNING: Sequences tr_C5FZG6_C5FZG6_ARTOC_554155 and tr_F2PVG0_F2PVG0_TRIEC_559882 are exactly identical! WARNING: Sequences tr_C5FZG6_C5FZG6_ARTOC_554155 and tr_A0A059J039_A0A059J039_9EURO_1215338 are exactly identical! WARNING: Sequences tr_A0A179US72_A0A179US72_BLAGS_559298 and tr_C5GPR0_C5GPR0_AJEDR_559297 are exactly identical! WARNING: Sequences tr_B0X1Z9_B0X1Z9_CULQU_7176 and tr_Q1DH30_Q1DH30_AEDAE_7159 are exactly identical! WARNING: Sequences tr_Q4WWL5_Q4WWL5_ASPFU_330879 and tr_A1D881_A1D881_NEOFI_331117 are exactly identical! WARNING: Sequences tr_Q4WWL5_Q4WWL5_ASPFU_330879 and tr_A0A229XP52_A0A229XP52_9EURO_1245748 are exactly identical! WARNING: Sequences tr_Q4WWL5_Q4WWL5_ASPFU_330879 and tr_A0A397G9R6_A0A397G9R6_9EURO_41047 are exactly identical! WARNING: Sequences tr_Q4WWL5_Q4WWL5_ASPFU_330879 and tr_A0A2I1C1Y2_A0A2I1C1Y2_9EURO_1392255 are exactly identical! WARNING: Sequences tr_M3ZFW1_M3ZFW1_XIPMA_8083 and tr_I3KKI2_I3KKI2_ORENI_8128 are exactly identical! WARNING: Sequences tr_M3ZFW1_M3ZFW1_XIPMA_8083 and tr_A0A087XGA4_A0A087XGA4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AA48_M4AA48_XIPMA_8083 and tr_A0A087YBI6_A0A087YBI6_POEFO_48698 are exactly identical! WARNING: Sequences tr_H3GAE8_H3GAE8_PHYRM_164328 and tr_H3GB56_H3GB56_PHYRM_164328 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0RIK3_A0A0V0RIK3_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1CUH7_A0A0V1CUH7_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0X3J9_A0A0V0X3J9_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0VL80_A0A0V0VL80_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1L7T0_A0A0V1L7T0_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0ZBA7_A0A0V0ZBA7_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1A5X0_A0A0V1A5X0_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0XL18_A0A0V0XL18_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1M503_A0A0V1M503_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1NIB3_A0A0V1NIB3_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V1H8M2_A0A0V1H8M2_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SHQ3_E5SHQ3_TRISP_6334 and tr_A0A0V0TPL3_A0A0V0TPL3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A212FI27_A0A212FI27_DANPL_278856 and tr_A0A194RAJ2_A0A194RAJ2_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A212FI27_A0A212FI27_DANPL_278856 and tr_A0A194Q362_A0A194Q362_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A212FI27_A0A212FI27_DANPL_278856 and tr_A0A2A4JDN7_A0A2A4JDN7_HELVI_7102 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_L2FXQ3_L2FXQ3_COLFN_1213859 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_N4UR30_N4UR30_COLOR_1213857 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_T0L2X0_T0L2X0_COLGC_1237896 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_A0A066XFR5_A0A066XFR5_COLSU_1173701 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_A0A166XFL8_A0A166XFL8_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1VRW4_H1VRW4_COLHI_759273 and tr_A0A1Q8RP19_A0A1Q8RP19_9PEZI_708187 are exactly identical! WARNING: Sequences tr_F4NUT9_F4NUT9_BATDJ_684364 and tr_A0A177WCN4_A0A177WCN4_BATDE_403673 are exactly identical! WARNING: Sequences tr_F4PE27_F4PE27_BATDJ_684364 and tr_A0A177WGF7_A0A177WGF7_BATDE_403673 are exactly identical! WARNING: Sequences tr_E6REX9_E6REX9_CRYGW_367775 and tr_A0A095CF84_A0A095CF84_CRYGR_294750 are exactly identical! WARNING: Sequences tr_F9XQF3_F9XQF3_ZYMTI_336722 and tr_A0A139HDP1_A0A139HDP1_9PEZI_321146 are exactly identical! WARNING: Sequences tr_G2YY48_G2YY48_BOTF4_999810 and tr_M7V0Y2_M7V0Y2_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_A8XL88_A8XL88_CAEBR_6238 and tr_A0A2G5TZL0_A0A2G5TZL0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_E6ZLJ7_E6ZLJ7_SPORE_999809 and tr_A0A0F7S6I1_A0A0F7S6I1_9BASI_49012 are exactly identical! WARNING: Sequences tr_B3RJ81_B3RJ81_TRIAD_10228 and tr_A0A369RUX7_A0A369RUX7_9METZ_287889 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A1L9N268_A0A1L9N268_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A1L9V2X3_A0A1L9V2X3_9EURO_767769 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A317UW15_A0A317UW15_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A318ZVA5_A0A318ZVA5_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A319DY61_A0A319DY61_9EURO_1448318 are exactly identical! WARNING: Sequences tr_G3YBQ9_G3YBQ9_ASPNA_380704 and tr_A0A395HEV3_A0A395HEV3_9EURO_1448316 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A0D2XI26_A0A0D2XI26_FUSO4_426428 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_S0E4X4_S0E4X4_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_N4U7C1_N4U7C1_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_X0CVQ5_X0CVQ5_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A0M9EYY4_A0A0M9EYY4_FUSLA_179993 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_V6RR76_V6RR76_GIBZE_229533 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A1B8AUD6_A0A1B8AUD6_FUSPO_36050 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A2H3TYZ4_A0A2H3TYZ4_FUSOX_5507 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A2H3H9Z4_A0A2H3H9Z4_FUSOX_327505 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A2K0VZ39_A0A2K0VZ39_GIBNY_42673 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A2T4GMP0_A0A2T4GMP0_FUSCU_5516 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A2L2TDK8_A0A2L2TDK8_9HYPO_56646 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A365NFG9_A0A365NFG9_GIBIN_948311 are exactly identical! WARNING: Sequences tr_W7LW51_W7LW51_GIBM7_334819 and tr_A0A366R6Z1_A0A366R6Z1_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_M7TCB1_M7TCB1_EUTLA_1287681 and tr_A0A1Y2DMX8_A0A1Y2DMX8_9PEZI_1141098 are exactly identical! WARNING: Sequences tr_S2J7J6_S2J7J6_MUCC1_1220926 and tr_A0A0C9M700_A0A0C9M700_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2J7J6_S2J7J6_MUCC1_1220926 and tr_A0A168MN86_A0A168MN86_MUCCL_747725 are exactly identical! WARNING: Sequences tr_S2JWK8_S2JWK8_MUCC1_1220926 and tr_A0A168I8J9_A0A168I8J9_MUCCL_747725 are exactly identical! WARNING: Sequences tr_M2REW6_M2REW6_COCSN_665912 and tr_M2SXJ7_M2SXJ7_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2REW6_M2REW6_COCSN_665912 and tr_W6YHH8_W6YHH8_COCCA_930089 are exactly identical! WARNING: Sequences tr_V2XZK9_V2XZK9_MONRO_1381753 and tr_A0A0W0G2H7_A0A0W0G2H7_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QPT0_W2QPT0_PHYPN_761204 and tr_A0A0W8CIX0_A0A0W8CIX0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QPT0_W2QPT0_PHYPN_761204 and tr_W2P055_W2P055_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W9XL28_W9XL28_9EURO_1182542 and tr_W9Z1T8_W9Z1T8_9EURO_1182541 are exactly identical! WARNING: Sequences tr_A0A010REW5_A0A010REW5_9PEZI_1445577 and tr_A0A135V724_A0A135V724_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A010REW5_A0A010REW5_9PEZI_1445577 and tr_A0A1G4B365_A0A1G4B365_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A015J9I1_A0A015J9I1_9GLOM_1432141 and tr_A0A2I1F8T3_A0A2I1F8T3_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015J9I1_A0A015J9I1_9GLOM_1432141 and tr_A0A2Z6RDE7_A0A2Z6RDE7_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A015K574_A0A015K574_9GLOM_1432141 and tr_A0A2I1EFZ9_A0A2I1EFZ9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044TUK3_A0A044TUK3_ONCVO_6282 and tr_A0A0R3S644_A0A0R3S644_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A044TUK3_A0A044TUK3_ONCVO_6282 and tr_A0A183GZP5_A0A183GZP5_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044TUK3_A0A044TUK3_ONCVO_6282 and tr_A0A182EA21_A0A182EA21_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A074WDW1_A0A074WDW1_9PEZI_1043004 and tr_A0A074ZDP8_A0A074ZDP8_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A074WDW1_A0A074WDW1_9PEZI_1043004 and tr_A0A074WWC7_A0A074WWC7_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A072PDK7_A0A072PDK7_9EURO_1182545 and tr_A0A0D1ZMU7_A0A0D1ZMU7_9EURO_212818 are exactly identical! WARNING: Sequences tr_A0A094EWE0_A0A094EWE0_9PEZI_1420910 and tr_A0A094EJT5_A0A094EJT5_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_A0A094EWE0_A0A094EWE0_9PEZI_1420910 and tr_A0A1B8DZT1_A0A1B8DZT1_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A094EWE0_A0A094EWE0_9PEZI_1420910 and tr_A0A1B8GU26_A0A1B8GU26_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094EWE0_A0A094EWE0_9PEZI_1420910 and tr_A0A1B8EQT9_A0A1B8EQT9_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A0A2JSB8_A0A0A2JSB8_PENEN_27334 and tr_A0A0M8P7Z9_A0A0M8P7Z9_9EURO_229535 are exactly identical! WARNING: Sequences tr_A0A0A2JSB8_A0A0A2JSB8_PENEN_27334 and tr_A0A0G4P1I3_A0A0G4P1I3_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0A2JSB8_A0A0A2JSB8_PENEN_27334 and tr_A0A124GT38_A0A124GT38_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0A2JSB8_A0A0A2JSB8_PENEN_27334 and tr_A0A1V6NYB3_A0A1V6NYB3_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0A2JSB8_A0A0A2JSB8_PENEN_27334 and tr_A0A1V6QV02_A0A1V6QV02_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A067CJ94_A0A067CJ94_SAPPC_695850 and tr_T0RB17_T0RB17_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0F4GGV7_A0A0F4GGV7_9PEZI_1047168 and tr_A0A1X7S9L9_A0A1X7S9L9_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0F8XN00_A0A0F8XN00_9EURO_308745 and tr_A0A2T5M076_A0A2T5M076_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0FHU7_A0A0K0FHU7_STRVS_75913 and tr_A0A0N5BL08_A0A0N5BL08_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A2A9PEG9_A0A2A9PEG9_9HYPO_268505 and tr_A0A369GZP2_A0A369GZP2_9HYPO_2039875 are exactly identical! WARNING: Sequences tr_A0A0A1MWH9_A0A0A1MWH9_9FUNG_58291 and tr_A0A2G4T0B6_A0A2G4T0B6_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1MWH9_A0A0A1MWH9_9FUNG_58291 and tr_A0A367IUR8_A0A367IUR8_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NM61_A0A0A1NM61_9FUNG_58291 and tr_A0A2G4SMW4_A0A2G4SMW4_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A091EW81_A0A091EW81_CORBR_85066 and tr_A0A091I877_A0A091I877_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0D2DMZ5_A0A0D2DMZ5_9EURO_1442368 and tr_A0A0D2HE75_A0A0D2HE75_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A0D2DMZ5_A0A0D2DMZ5_9EURO_1442368 and tr_A0A0D2CNH0_A0A0D2CNH0_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A091IND6_A0A091IND6_EGRGA_188379 and tr_A0A091W298_A0A091W298_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IND6_A0A091IND6_EGRGA_188379 and tr_A0A087QLM8_A0A087QLM8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IND6_A0A091IND6_EGRGA_188379 and tr_A0A091WCH9_A0A091WCH9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IND6_A0A091IND6_EGRGA_188379 and tr_A0A0A0A9V5_A0A0A0A9V5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IND6_A0A091IND6_EGRGA_188379 and tr_A0A2I0MJD7_A0A2I0MJD7_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A093HWW7_A0A093HWW7_STRCA_441894 and tr_A0A099ZRN6_A0A099ZRN6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A0P1BI30_A0A0P1BI30_9BASI_401625 and tr_A0A316W7R3_A0A316W7R3_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A135L9Y8_A0A135L9Y8_PENPA_5078 and tr_A0A1V6S5R7_A0A1V6S5R7_9EURO_29845 are exactly identical! WARNING: Sequences tr_A0A164XKU2_A0A164XKU2_9HOMO_1314777 and tr_A0A166JC93_A0A166JC93_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194WAY5_A0A194WAY5_9PEZI_105487 and tr_A0A194VF39_A0A194VF39_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1B7NL32_A0A1B7NL32_9EURO_1658172 and tr_A0A1J9PQC9_A0A1J9PQC9_9EURO_1447872 are exactly identical! WARNING: Sequences tr_A0A1L9PGM9_A0A1L9PGM9_ASPVE_1036611 and tr_A0A1L9TPH5_A0A1L9TPH5_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A1L9WXA0_A0A1L9WXA0_ASPAC_690307 and tr_A0A319DN66_A0A319DN66_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WXA0_A0A1L9WXA0_ASPAC_690307 and tr_A0A318ZXX8_A0A318ZXX8_9EURO_1450539 are exactly identical! WARNING: Sequences tr_A0A1L9WXA0_A0A1L9WXA0_ASPAC_690307 and tr_A0A2V5HMT3_A0A2V5HMT3_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WXA0_A0A1L9WXA0_ASPAC_690307 and tr_A0A2V5H018_A0A2V5H018_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A060YYQ4_A0A060YYQ4_ONCMY_8022 and tr_W5UD13_W5UD13_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A226N0R5_A0A226N0R5_CALSU_9009 and tr_A0A226PLW1_A0A226PLW1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3E0W2_A0A2H3E0W2_ARMGA_47427 and tr_A0A2H3C5Z6_A0A2H3C5Z6_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3IDT7_A0A2H3IDT7_9EURO_290292 and tr_A0A364LAC9_A0A364LAC9_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2G5HYZ3_A0A2G5HYZ3_CERBT_122368 and tr_A0A2S6C693_A0A2S6C693_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A1C9II40_A0A1C9II40_9GLOM_588596 and tr_A0A2Z6QGG3_A0A2Z6QGG3_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A2I2FF81_A0A2I2FF81_9EURO_41067 and tr_A0A2J5HXK0_A0A2J5HXK0_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A317W952_A0A317W952_9EURO_1448321 and tr_A0A319DX26_A0A319DX26_9EURO_1448320 are exactly identical! WARNING: Duplicate sequences found: 342 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.reduced.phy Alignment comprises 1 partitions and 174 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 174 / 174 Gaps: 0.42 % Invariant sites: 3.45 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 174 / 13920 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -105505.031781] Initial branch length optimization [00:00:03 -88482.580440] Model parameter optimization (eps = 10.000000) [00:01:02 -88262.754996] AUTODETECT spr round 1 (radius: 5) [00:03:17 -62187.988619] AUTODETECT spr round 2 (radius: 10) [00:06:06 -46821.191226] AUTODETECT spr round 3 (radius: 15) [00:08:51 -39809.595981] AUTODETECT spr round 4 (radius: 20) [00:11:38 -35435.516226] AUTODETECT spr round 5 (radius: 25) [00:14:57 -32267.640251] SPR radius for FAST iterations: 25 (autodetect) [00:14:57 -32267.640251] Model parameter optimization (eps = 3.000000) [00:15:16 -32242.801967] FAST spr round 1 (radius: 25) [00:17:47 -25205.823161] FAST spr round 2 (radius: 25) [00:19:46 -24418.298295] FAST spr round 3 (radius: 25) [00:21:33 -24267.391789] FAST spr round 4 (radius: 25) [00:23:15 -24219.737936] FAST spr round 5 (radius: 25) [00:24:55 -24219.734106] Model parameter optimization (eps = 1.000000) [00:25:07 -24218.179646] SLOW spr round 1 (radius: 5) [00:26:58 -24213.090324] SLOW spr round 2 (radius: 5) [00:28:52 -24213.088783] SLOW spr round 3 (radius: 10) [00:30:56 -24207.807917] SLOW spr round 4 (radius: 5) [00:33:22 -24207.807469] SLOW spr round 5 (radius: 10) [00:35:39 -24205.433200] SLOW spr round 6 (radius: 5) [00:38:01 -24203.628636] SLOW spr round 7 (radius: 5) [00:40:07 -24203.628581] SLOW spr round 8 (radius: 10) [00:42:13 -24203.628530] SLOW spr round 9 (radius: 15) [00:45:17 -24200.613639] SLOW spr round 10 (radius: 5) [00:47:49 -24195.289977] SLOW spr round 11 (radius: 5) [00:50:02 -24194.612509] SLOW spr round 12 (radius: 5) [00:52:05 -24194.394427] SLOW spr round 13 (radius: 5) [00:53:59 -24194.394383] SLOW spr round 14 (radius: 10) [00:55:58 -24194.394372] SLOW spr round 15 (radius: 15) [00:58:56 -24194.394355] SLOW spr round 16 (radius: 20) [01:03:02 -24194.394352] SLOW spr round 17 (radius: 25) [01:04:20] [worker #2] ML tree search #3, logLikelihood: -24156.643666 [01:08:10 -24192.729621] SLOW spr round 18 (radius: 5) [01:10:47 -24188.976468] SLOW spr round 19 (radius: 5) [01:13:06 -24187.395935] SLOW spr round 20 (radius: 5) [01:15:11 -24183.024740] SLOW spr round 21 (radius: 5) [01:17:11 -24183.024190] SLOW spr round 22 (radius: 10) [01:19:10 -24183.024038] SLOW spr round 23 (radius: 15) [01:20:30] [worker #1] ML tree search #2, logLikelihood: -24141.478963 [01:22:09 -24165.061108] SLOW spr round 24 (radius: 5) [01:24:44 -24160.202969] SLOW spr round 25 (radius: 5) [01:26:54 -24160.202927] SLOW spr round 26 (radius: 10) [01:28:58 -24160.202927] SLOW spr round 27 (radius: 15) [01:31:52 -24160.202927] SLOW spr round 28 (radius: 20) [01:35:47 -24160.202927] SLOW spr round 29 (radius: 25) [01:40:34 -24160.202927] Model parameter optimization (eps = 0.100000) [01:40:45] [worker #0] ML tree search #1, logLikelihood: -24159.894348 [01:40:45 -104476.020201] Initial branch length optimization [01:40:49 -87895.986038] Model parameter optimization (eps = 10.000000) [01:41:38 -87691.734340] AUTODETECT spr round 1 (radius: 5) [01:43:59 -61473.269570] AUTODETECT spr round 2 (radius: 10) [01:46:48 -47729.900946] AUTODETECT spr round 3 (radius: 15) [01:49:28 -41065.291936] AUTODETECT spr round 4 (radius: 20) [01:52:31 -35704.810992] AUTODETECT spr round 5 (radius: 25) [01:55:40 -33698.742292] SPR radius for FAST iterations: 25 (autodetect) [01:55:40 -33698.742292] Model parameter optimization (eps = 3.000000) [01:56:01 -33669.218276] FAST spr round 1 (radius: 25) [01:58:34 -27446.444133] FAST spr round 2 (radius: 25) [02:00:40 -25470.994421] FAST spr round 3 (radius: 25) [02:02:27 -24539.613819] FAST spr round 4 (radius: 25) [02:04:12 -24224.335558] FAST spr round 5 (radius: 25) [02:05:57 -24167.459789] FAST spr round 6 (radius: 25) [02:07:41 -24164.550372] FAST spr round 7 (radius: 25) [02:09:17 -24164.550208] Model parameter optimization (eps = 1.000000) [02:09:32 -24160.694936] SLOW spr round 1 (radius: 5) [02:10:29] [worker #2] ML tree search #6, logLikelihood: -24152.649652 [02:11:24 -24151.507574] SLOW spr round 2 (radius: 5) [02:13:19 -24148.690257] SLOW spr round 3 (radius: 5) [02:15:15 -24148.536293] SLOW spr round 4 (radius: 5) [02:17:12 -24148.535648] SLOW spr round 5 (radius: 10) [02:19:18 -24144.960013] SLOW spr round 6 (radius: 5) [02:21:47 -24144.959712] SLOW spr round 7 (radius: 10) [02:24:06 -24144.959546] SLOW spr round 8 (radius: 15) [02:26:58 -24140.102422] SLOW spr round 9 (radius: 5) [02:29:33 -24140.102277] SLOW spr round 10 (radius: 10) [02:31:54 -24140.102259] SLOW spr round 11 (radius: 15) [02:34:41 -24140.102247] SLOW spr round 12 (radius: 20) [02:38:04 -24140.102247] SLOW spr round 13 (radius: 25) [02:42:10 -24137.340691] SLOW spr round 14 (radius: 5) [02:44:50 -24136.999554] SLOW spr round 15 (radius: 5) [02:47:07 -24136.999520] SLOW spr round 16 (radius: 10) [02:49:17 -24136.999520] SLOW spr round 17 (radius: 15) [02:52:10 -24136.597183] SLOW spr round 18 (radius: 5) [02:54:42 -24136.243595] SLOW spr round 19 (radius: 5) [02:56:54 -24136.243565] SLOW spr round 20 (radius: 10) [02:59:02 -24136.243561] SLOW spr round 21 (radius: 15) [03:01:55 -24136.243557] SLOW spr round 22 (radius: 20) [03:05:21 -24136.243557] SLOW spr round 23 (radius: 25) [03:09:33 -24136.243557] Model parameter optimization (eps = 0.100000) [03:09:44] [worker #0] ML tree search #4, logLikelihood: -24136.007134 [03:09:45 -103885.611446] Initial branch length optimization [03:09:48 -87260.710489] Model parameter optimization (eps = 10.000000) [03:10:22 -87022.906378] AUTODETECT spr round 1 (radius: 5) [03:11:07] [worker #1] ML tree search #5, logLikelihood: -24162.194287 [03:12:39 -62348.216949] AUTODETECT spr round 2 (radius: 10) [03:14:04] [worker #2] ML tree search #9, logLikelihood: -24159.748931 [03:15:32 -47755.202373] AUTODETECT spr round 3 (radius: 15) [03:18:26 -37180.941010] AUTODETECT spr round 4 (radius: 20) [03:21:18 -31077.656290] AUTODETECT spr round 5 (radius: 25) [03:24:18 -30010.601736] SPR radius for FAST iterations: 25 (autodetect) [03:24:18 -30010.601736] Model parameter optimization (eps = 3.000000) [03:24:37 -29990.999861] FAST spr round 1 (radius: 25) [03:27:25 -24599.818193] FAST spr round 2 (radius: 25) [03:29:31 -24196.502211] FAST spr round 3 (radius: 25) [03:31:18 -24177.231940] FAST spr round 4 (radius: 25) [03:33:00 -24176.655508] FAST spr round 5 (radius: 25) [03:34:41 -24172.386005] FAST spr round 6 (radius: 25) [03:36:16 -24172.385944] Model parameter optimization (eps = 1.000000) [03:36:24 -24171.905249] SLOW spr round 1 (radius: 5) [03:38:17 -24165.516871] SLOW spr round 2 (radius: 5) [03:40:11 -24161.293168] SLOW spr round 3 (radius: 5) [03:42:00 -24161.292970] SLOW spr round 4 (radius: 10) [03:44:03 -24159.125437] SLOW spr round 5 (radius: 5) [03:46:23 -24159.125382] SLOW spr round 6 (radius: 10) [03:48:35 -24159.065297] SLOW spr round 7 (radius: 15) [03:51:28 -24157.274503] SLOW spr round 8 (radius: 5) [03:53:57 -24157.274441] SLOW spr round 9 (radius: 10) [03:56:16 -24157.274401] SLOW spr round 10 (radius: 15) [03:59:06 -24157.274401] SLOW spr round 11 (radius: 20) [04:02:53 -24155.833705] SLOW spr round 12 (radius: 5) [04:04:19] [worker #1] ML tree search #8, logLikelihood: -24132.087246 [04:05:25 -24155.833689] SLOW spr round 13 (radius: 10) [04:07:48 -24155.833689] SLOW spr round 14 (radius: 15) [04:10:38 -24155.833689] SLOW spr round 15 (radius: 20) [04:14:25 -24155.833689] SLOW spr round 16 (radius: 25) [04:19:09 -24155.833689] Model parameter optimization (eps = 0.100000) [04:19:15] [worker #0] ML tree search #7, logLikelihood: -24155.811829 [04:19:15 -104085.548604] Initial branch length optimization [04:19:18 -87825.066970] Model parameter optimization (eps = 10.000000) [04:20:09 -87576.403376] AUTODETECT spr round 1 (radius: 5) [04:22:25 -62117.720378] AUTODETECT spr round 2 (radius: 10) [04:25:14 -47835.737259] AUTODETECT spr round 3 (radius: 15) [04:27:58 -37476.135439] AUTODETECT spr round 4 (radius: 20) [04:30:53 -33272.725931] AUTODETECT spr round 5 (radius: 25) [04:34:02 -30849.252526] SPR radius for FAST iterations: 25 (autodetect) [04:34:02 -30849.252526] Model parameter optimization (eps = 3.000000) [04:34:21 -30832.363674] FAST spr round 1 (radius: 25) [04:37:03 -25543.332193] FAST spr round 2 (radius: 25) [04:39:09 -24961.025122] FAST spr round 3 (radius: 25) [04:41:00 -24545.080778] FAST spr round 4 (radius: 25) [04:42:43 -24531.823753] FAST spr round 5 (radius: 25) [04:44:20 -24531.483103] FAST spr round 6 (radius: 25) [04:45:55 -24531.482196] Model parameter optimization (eps = 1.000000) [04:46:04 -24530.053933] SLOW spr round 1 (radius: 5) [04:47:55 -24528.746821] SLOW spr round 2 (radius: 5) [04:49:48 -24527.266662] SLOW spr round 3 (radius: 5) [04:51:38 -24527.265754] SLOW spr round 4 (radius: 10) [04:53:40 -24524.805303] SLOW spr round 5 (radius: 5) [04:56:04 -24524.804790] SLOW spr round 6 (radius: 10) [04:58:15 -24523.829141] SLOW spr round 7 (radius: 5) [05:00:37 -24523.593474] SLOW spr round 8 (radius: 5) [05:02:44 -24523.339210] SLOW spr round 9 (radius: 5) [05:04:42 -24523.339209] SLOW spr round 10 (radius: 10) [05:06:43 -24523.339209] SLOW spr round 11 (radius: 15) [05:09:42 -24520.678506] SLOW spr round 12 (radius: 5) [05:12:12 -24520.678430] SLOW spr round 13 (radius: 10) [05:14:29 -24520.678430] SLOW spr round 14 (radius: 15) [05:17:19 -24520.678430] SLOW spr round 15 (radius: 20) [05:21:25 -24359.407607] SLOW spr round 16 (radius: 5) [05:24:05 -24160.465803] SLOW spr round 17 (radius: 5) [05:26:26 -24150.988501] SLOW spr round 18 (radius: 5) [05:28:34 -24148.692876] SLOW spr round 19 (radius: 5) [05:30:31 -24148.019418] SLOW spr round 20 (radius: 5) [05:32:24 -24148.019333] SLOW spr round 21 (radius: 10) [05:34:29 -24148.019332] SLOW spr round 22 (radius: 15) [05:37:30 -24140.144631] SLOW spr round 23 (radius: 5) [05:39:17] [worker #1] ML tree search #11, logLikelihood: -24153.976672 [05:40:06 -24139.195721] SLOW spr round 24 (radius: 5) [05:42:22 -24138.841720] SLOW spr round 25 (radius: 5) [05:43:00] [worker #2] ML tree search #12, logLikelihood: -24289.329263 [05:44:26 -24138.841275] SLOW spr round 26 (radius: 10) [05:46:33 -24138.841272] SLOW spr round 27 (radius: 15) [05:49:32 -24138.841272] SLOW spr round 28 (radius: 20) [05:53:00 -24138.841272] SLOW spr round 29 (radius: 25) [05:57:38 -24126.446504] SLOW spr round 30 (radius: 5) [06:00:17 -24126.446493] SLOW spr round 31 (radius: 10) [06:02:45 -24126.446493] SLOW spr round 32 (radius: 15) [06:05:38 -24126.446493] SLOW spr round 33 (radius: 20) [06:09:09 -24126.446493] SLOW spr round 34 (radius: 25) [06:13:44 -24126.446493] Model parameter optimization (eps = 0.100000) [06:13:57] [worker #0] ML tree search #10, logLikelihood: -24125.335800 [06:13:57 -105091.269743] Initial branch length optimization [06:14:00 -88283.613561] Model parameter optimization (eps = 10.000000) [06:15:00 -88058.373379] AUTODETECT spr round 1 (radius: 5) [06:17:22 -62477.515604] AUTODETECT spr round 2 (radius: 10) [06:20:16 -46966.654271] AUTODETECT spr round 3 (radius: 15) [06:23:02 -39015.815286] AUTODETECT spr round 4 (radius: 20) [06:26:07 -33757.758088] AUTODETECT spr round 5 (radius: 25) [06:29:35 -30554.067907] SPR radius for FAST iterations: 25 (autodetect) [06:29:35 -30554.067907] Model parameter optimization (eps = 3.000000) [06:29:59 -30529.555673] FAST spr round 1 (radius: 25) [06:32:39 -24803.397093] FAST spr round 2 (radius: 25) [06:34:50 -24235.595357] FAST spr round 3 (radius: 25) [06:36:45 -24181.194560] FAST spr round 4 (radius: 25) [06:38:33 -24172.641845] FAST spr round 5 (radius: 25) [06:40:18 -24171.374024] FAST spr round 6 (radius: 25) [06:42:02 -24171.373561] Model parameter optimization (eps = 1.000000) [06:42:17 -24169.122247] SLOW spr round 1 (radius: 5) [06:44:10 -24161.372297] SLOW spr round 2 (radius: 5) [06:46:06 -24159.958824] SLOW spr round 3 (radius: 5) [06:48:02 -24156.597958] SLOW spr round 4 (radius: 5) [06:49:57 -24156.597860] SLOW spr round 5 (radius: 10) [06:52:06 -24151.654326] SLOW spr round 6 (radius: 5) [06:54:36 -24149.132552] SLOW spr round 7 (radius: 5) [06:56:46 -24149.132492] SLOW spr round 8 (radius: 10) [06:58:53 -24149.132486] SLOW spr round 9 (radius: 15) [07:02:00 -24148.998215] SLOW spr round 10 (radius: 5) [07:02:56] [worker #1] ML tree search #14, logLikelihood: -24134.012791 [07:04:34 -24148.998173] SLOW spr round 11 (radius: 10) [07:06:58 -24148.998159] SLOW spr round 12 (radius: 15) [07:10:00 -24148.998155] SLOW spr round 13 (radius: 20) [07:13:52 -24146.639138] SLOW spr round 14 (radius: 5) [07:16:36 -24144.631415] SLOW spr round 15 (radius: 5) [07:18:55 -24144.631369] SLOW spr round 16 (radius: 10) [07:21:12 -24142.733172] SLOW spr round 17 (radius: 5) [07:23:37 -24142.513470] SLOW spr round 18 (radius: 5) [07:25:46 -24141.518961] SLOW spr round 19 (radius: 5) [07:27:45 -24141.518225] SLOW spr round 20 (radius: 10) [07:29:50 -24141.518191] SLOW spr round 21 (radius: 15) [07:32:59 -24141.518187] SLOW spr round 22 (radius: 20) [07:36:54 -24141.518187] SLOW spr round 23 (radius: 25) [07:41:57 -24141.518187] Model parameter optimization (eps = 0.100000) [07:42:03] [worker #0] ML tree search #13, logLikelihood: -24141.503327 [07:42:03 -104917.224847] Initial branch length optimization [07:42:06 -88230.861189] Model parameter optimization (eps = 10.000000) [07:42:52 -87992.023663] AUTODETECT spr round 1 (radius: 5) [07:45:16 -61998.890956] AUTODETECT spr round 2 (radius: 10) [07:48:07 -48014.163798] AUTODETECT spr round 3 (radius: 15) [07:50:51 -39344.152775] AUTODETECT spr round 4 (radius: 20) [07:53:59 -34795.487295] AUTODETECT spr round 5 (radius: 25) [07:54:56] [worker #2] ML tree search #15, logLikelihood: -24419.560671 [07:57:08 -32052.408407] SPR radius for FAST iterations: 25 (autodetect) [07:57:08 -32052.408407] Model parameter optimization (eps = 3.000000) [07:57:30 -32026.468836] FAST spr round 1 (radius: 25) [08:00:19 -25528.206050] FAST spr round 2 (radius: 25) [08:02:38 -24644.477061] FAST spr round 3 (radius: 25) [08:04:35 -24559.054780] FAST spr round 4 (radius: 25) [08:06:22 -24549.005776] FAST spr round 5 (radius: 25) [08:08:07 -24545.463115] FAST spr round 6 (radius: 25) [08:09:50 -24544.678949] FAST spr round 7 (radius: 25) [08:11:00] [worker #1] ML tree search #17, logLikelihood: -24134.755885 [08:11:30 -24544.678949] Model parameter optimization (eps = 1.000000) [08:11:44 -24542.502983] SLOW spr round 1 (radius: 5) [08:13:40 -24538.679469] SLOW spr round 2 (radius: 5) [08:15:40 -24536.582920] SLOW spr round 3 (radius: 5) [08:17:39 -24536.568129] SLOW spr round 4 (radius: 10) [08:19:46 -24536.521670] SLOW spr round 5 (radius: 15) [08:23:01 -24520.507584] SLOW spr round 6 (radius: 5) [08:25:39 -24405.313342] SLOW spr round 7 (radius: 5) [08:27:57 -24391.611252] SLOW spr round 8 (radius: 5) [08:30:01 -24391.611227] SLOW spr round 9 (radius: 10) [08:32:08 -24390.844316] SLOW spr round 10 (radius: 5) [08:34:40 -24389.713221] SLOW spr round 11 (radius: 5) [08:36:51 -24389.713206] SLOW spr round 12 (radius: 10) [08:38:59 -24389.713189] SLOW spr round 13 (radius: 15) [08:41:52 -24389.713174] SLOW spr round 14 (radius: 20) [08:45:26 -24378.115749] SLOW spr round 15 (radius: 5) [08:48:09 -24323.806995] SLOW spr round 16 (radius: 5) [08:50:32 -24309.973502] SLOW spr round 17 (radius: 5) [08:52:41 -24297.434166] SLOW spr round 18 (radius: 5) [08:54:38 -24297.432465] SLOW spr round 19 (radius: 10) [08:56:47 -24271.788573] SLOW spr round 20 (radius: 5) [08:59:15 -24271.788469] SLOW spr round 21 (radius: 10) [09:01:30 -24254.846484] SLOW spr round 22 (radius: 5) [09:03:54 -24254.846482] SLOW spr round 23 (radius: 10) [09:06:07 -24254.846479] SLOW spr round 24 (radius: 15) [09:08:55 -24254.846479] SLOW spr round 25 (radius: 20) [09:12:20 -24246.184043] SLOW spr round 26 (radius: 5) [09:14:57 -24246.158679] SLOW spr round 27 (radius: 10) [09:17:23 -24234.334835] SLOW spr round 28 (radius: 5) [09:17:27] [worker #1] ML tree search #20, logLikelihood: -24146.840166 [09:19:09] [worker #2] ML tree search #18, logLikelihood: -24143.545037 [09:19:46 -24233.361006] SLOW spr round 29 (radius: 5) [09:21:52 -24233.361006] SLOW spr round 30 (radius: 10) [09:23:56 -24233.361006] SLOW spr round 31 (radius: 15) [09:26:46 -24233.361006] SLOW spr round 32 (radius: 20) [09:30:07 -24233.361006] SLOW spr round 33 (radius: 25) [09:34:18 -24160.930246] SLOW spr round 34 (radius: 5) [09:36:54 -24160.648128] SLOW spr round 35 (radius: 5) [09:39:10 -24160.647976] SLOW spr round 36 (radius: 10) [09:41:18 -24160.647974] SLOW spr round 37 (radius: 15) [09:44:07 -24160.647972] SLOW spr round 38 (radius: 20) [09:47:27 -24160.647972] SLOW spr round 39 (radius: 25) [09:51:37 -24160.647972] Model parameter optimization (eps = 0.100000) [09:51:45] [worker #0] ML tree search #16, logLikelihood: -24160.400813 [09:51:45 -104663.703021] Initial branch length optimization [09:51:49 -87990.521413] Model parameter optimization (eps = 10.000000) [09:52:21 -87816.393445] AUTODETECT spr round 1 (radius: 5) [09:54:40 -61594.180375] AUTODETECT spr round 2 (radius: 10) [09:57:19 -48691.220620] AUTODETECT spr round 3 (radius: 15) [09:59:58 -39485.516670] AUTODETECT spr round 4 (radius: 20) [10:02:58 -34079.282561] AUTODETECT spr round 5 (radius: 25) [10:06:15 -31331.774786] SPR radius for FAST iterations: 25 (autodetect) [10:06:15 -31331.774786] Model parameter optimization (eps = 3.000000) [10:06:36 -31305.469152] FAST spr round 1 (radius: 25) [10:09:12 -25526.154777] FAST spr round 2 (radius: 25) [10:11:14 -25094.063242] FAST spr round 3 (radius: 25) [10:13:05 -24669.606339] FAST spr round 4 (radius: 25) [10:14:51 -24657.225248] FAST spr round 5 (radius: 25) [10:16:35 -24656.694652] FAST spr round 6 (radius: 25) [10:18:18 -24656.694339] Model parameter optimization (eps = 1.000000) [10:18:34 -24652.174651] SLOW spr round 1 (radius: 5) [10:20:26 -24649.330509] SLOW spr round 2 (radius: 5) [10:22:22 -24649.288151] SLOW spr round 3 (radius: 10) [10:24:29 -24644.462280] SLOW spr round 4 (radius: 5) [10:26:59 -24642.628217] SLOW spr round 5 (radius: 5) [10:29:13 -24642.627902] SLOW spr round 6 (radius: 10) [10:31:22 -24642.569777] SLOW spr round 7 (radius: 15) [10:34:17 -24640.374826] SLOW spr round 8 (radius: 5) [10:36:52 -24637.733356] SLOW spr round 9 (radius: 5) [10:39:09 -24636.688029] SLOW spr round 10 (radius: 5) [10:41:14 -24636.687809] SLOW spr round 11 (radius: 10) [10:43:21 -24636.687717] SLOW spr round 12 (radius: 15) [10:46:20 -24636.687634] SLOW spr round 13 (radius: 20) [10:50:04 -24636.687634] SLOW spr round 14 (radius: 25) [10:55:01 -24568.270986] SLOW spr round 15 (radius: 5) [10:57:45 -24373.087028] SLOW spr round 16 (radius: 5) [11:00:09 -24361.407626] SLOW spr round 17 (radius: 5) [11:02:16 -24360.466089] SLOW spr round 18 (radius: 5) [11:04:15 -24360.464763] SLOW spr round 19 (radius: 10) [11:06:26 -24199.162259] SLOW spr round 20 (radius: 5) [11:08:59 -24168.462110] SLOW spr round 21 (radius: 5) [11:11:14 -24163.999660] SLOW spr round 22 (radius: 5) [11:13:15 -24163.999530] SLOW spr round 23 (radius: 10) [11:15:20 -24163.999527] SLOW spr round 24 (radius: 15) [11:18:18 -24162.852380] SLOW spr round 25 (radius: 5) [11:20:51 -24162.852337] SLOW spr round 26 (radius: 10) [11:23:13 -24162.852336] SLOW spr round 27 (radius: 15) [11:26:06 -24162.253624] SLOW spr round 28 (radius: 5) [11:28:39 -24162.253534] SLOW spr round 29 (radius: 10) [11:31:01 -24162.253533] SLOW spr round 30 (radius: 15) [11:33:50 -24161.983378] SLOW spr round 31 (radius: 5) [11:36:28 -24160.858793] SLOW spr round 32 (radius: 5) [11:38:45 -24160.662625] SLOW spr round 33 (radius: 5) [11:40:47 -24160.662624] SLOW spr round 34 (radius: 10) [11:42:51 -24160.662624] SLOW spr round 35 (radius: 15) [11:45:45 -24160.662624] SLOW spr round 36 (radius: 20) [11:49:21 -24155.658379] SLOW spr round 37 (radius: 5) [11:51:57 -24155.658374] SLOW spr round 38 (radius: 10) [11:54:25 -24153.698268] SLOW spr round 39 (radius: 5) [11:56:52 -24150.621709] SLOW spr round 40 (radius: 5) [11:59:00 -24149.828619] SLOW spr round 41 (radius: 5) [12:00:57 -24149.828607] SLOW spr round 42 (radius: 10) [12:03:00 -24148.272095] SLOW spr round 43 (radius: 5) [12:05:25 -24148.271860] SLOW spr round 44 (radius: 10) [12:07:39 -24148.271857] SLOW spr round 45 (radius: 15) [12:10:28 -24138.216844] SLOW spr round 46 (radius: 5) [12:13:02 -24137.474875] SLOW spr round 47 (radius: 5) [12:15:15 -24137.157613] SLOW spr round 48 (radius: 5) [12:17:16 -24137.157559] SLOW spr round 49 (radius: 10) [12:19:19 -24136.735527] SLOW spr round 50 (radius: 5) [12:21:43 -24136.735455] SLOW spr round 51 (radius: 10) [12:23:57 -24136.735455] SLOW spr round 52 (radius: 15) [12:26:45 -24136.735455] SLOW spr round 53 (radius: 20) [12:30:20 -24135.774120] SLOW spr round 54 (radius: 5) [12:32:57 -24135.774117] SLOW spr round 55 (radius: 10) [12:35:22 -24134.845032] SLOW spr round 56 (radius: 5) [12:37:45 -24134.844846] SLOW spr round 57 (radius: 10) [12:39:58 -24134.844845] SLOW spr round 58 (radius: 15) [12:42:46 -24134.844844] SLOW spr round 59 (radius: 20) [12:46:20 -24134.844844] SLOW spr round 60 (radius: 25) [12:50:43 -24134.844844] Model parameter optimization (eps = 0.100000) [12:50:56] [worker #0] ML tree search #19, logLikelihood: -24133.764008 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.376666,0.321189) (0.326253,0.499293) (0.216626,1.552454) (0.080455,4.720913) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -24125.335800 AIC score: 52260.671600 / AICc score: 8096320.671600 / BIC score: 58594.577475 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=174). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P63000/3_mltree/P63000.raxml.log Analysis started: 19-Jun-2021 01:25:14 / finished: 19-Jun-2021 14:16:11 Elapsed time: 46256.774 seconds