RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:47:44 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/2_msa/P62140_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/3_mltree/P62140.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101264 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/2_msa/P62140_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 327 sites WARNING: Sequences tr_B4QSB3_B4QSB3_DROSI_7240 and sp_P12982_PP12_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QSB3_B4QSB3_DROSI_7240 and tr_B4HGY2_B4HGY2_DROSE_7238 are exactly identical! WARNING: Sequences tr_E9HKA6_E9HKA6_DAPPU_6669 and tr_A0A164VVM4_A0A164VVM4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AAH1_E2AAH1_CAMFO_104421 and tr_A0A151WUX6_A0A151WUX6_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AAH1_E2AAH1_CAMFO_104421 and tr_A0A195E349_A0A195E349_9HYME_471704 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_P62141_PP1B_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_M3Z2R4_M3Z2R4_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_G1RZE5_G1RZE5_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_Q5R740_PP1B_PONAB_9601 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_G1KIW6_G1KIW6_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_G1SEK1_G1SEK1_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_P62143_PP1B_RABIT_9986 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_Q8MJ47_PP1B_CANLF_9615 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_F7BDA3_F7BDA3_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_F7AJD1_F7AJD1_MONDO_13616 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_P62142_PP1B_RAT_10116 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_H0VAY6_H0VAY6_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_P62140_PP1B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_H9FWD0_H9FWD0_MACMU_9544 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_G3SW90_G3SW90_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_P61292_PP1B_PIG_9823 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_G1LET8_G1LET8_AILME_9646 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and sp_Q3SWW9_PP1B_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_L5KTG1_L5KTG1_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2I2V0N2_A0A2I2V0N2_FELCA_9685 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A0D9RE27_A0A0D9RE27_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A1S2ZSM5_A0A1S2ZSM5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A1S3EYZ1_A0A1S3EYZ1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A3Q0CW64_A0A3Q0CW64_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A218UW58_A0A218UW58_9PASE_299123 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2K5MSN5_A0A2K5MSN5_CERAT_9531 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2K6C145_A0A2K6C145_MACNE_9545 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2U3V6V6_A0A2U3V6V6_TURTR_9739 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2U3VJ48_A0A2U3VJ48_ODORO_9708 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2U3YDE7_A0A2U3YDE7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2Y9R8S4_A0A2Y9R8S4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2Y9IEY6_A0A2Y9IEY6_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2Y9NAB7_A0A2Y9NAB7_DELLE_9749 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A2Y9SAP0_A0A2Y9SAP0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P62207_PP1B_CHICK_9031 and tr_A0A384AVK7_A0A384AVK7_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_I2G0I3_I2G0I3_USTH4_1128400 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_E7A1X5_E7A1X5_SPORE_999809 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_M9MHA8_M9MHA8_PSEA3_1151754 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_R9P8F9_R9P8F9_PSEHS_1305764 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_V5E571_V5E571_KALBG_1365824 are exactly identical! WARNING: Sequences tr_A0A0D1C654_A0A0D1C654_USTMA_237631 and tr_A0A317XZW0_A0A317XZW0_9BASI_1882483 are exactly identical! WARNING: Sequences sp_P62137_PP1A_MOUSE_10090 and tr_G3MX90_G3MX90_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P63087_PP1G_MOUSE_10090 and sp_P63088_PP1G_RAT_10116 are exactly identical! WARNING: Sequences sp_P63087_PP1G_MOUSE_10090 and sp_P61287_PP1G_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P63087_PP1G_MOUSE_10090 and tr_A0A2Y9ELS4_A0A2Y9ELS4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_G1SWW8_G1SWW8_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_E2QXE0_E2QXE0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_I3MDJ7_I3MDJ7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_H0V629_H0V629_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_F1RNL4_F1RNL4_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_M3WEL4_M3WEL4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A1S3A446_A0A1S3A446_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A3Q0D861_A0A3Q0D861_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A2U3VLM8_A0A2U3VLM8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A2U3XZZ9_A0A2U3XZZ9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A2Y9KNJ7_A0A2Y9KNJ7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XSW6_M3XSW6_MUSPF_9669 and tr_A0A384AQC7_A0A384AQC7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_G1R3I1_G1R3I1_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_G1P3Z6_G1P3Z6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_G3R3C0_G3R3C0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2J8U0C7_A0A2J8U0C7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and sp_P62139_PP1A_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_W5PNV2_W5PNV2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and sp_P62138_PP1A_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_H0XUE6_H0XUE6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A286XCF8_A0A286XCF8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and sp_P62136_PP1A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_F7BFW2_F7BFW2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_G1L1P7_G1L1P7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and sp_Q3T0E7_PP1A_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_M3WSE9_M3WSE9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A096NBP1_A0A096NBP1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A0D9R869_A0A0D9R869_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A1S3FIT5_A0A1S3FIT5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A1U7Q2V8_A0A1U7Q2V8_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2K5LMN4_A0A2K5LMN4_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2K6DRL5_A0A2K6DRL5_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2U3VGK7_A0A2U3VGK7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2U3Z046_A0A2U3Z046_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2Y9JSR8_A0A2Y9JSR8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2Y9PJ76_A0A2Y9PJ76_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XXH0_M3XXH0_MUSPF_9669 and tr_A0A2Y9TDY2_A0A2Y9TDY2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B6H960_B6H960_PENRW_500485 and tr_A0A0A2IL92_A0A0A2IL92_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6H960_B6H960_PENRW_500485 and tr_A0A1V6NI74_A0A1V6NI74_9EURO_60169 are exactly identical! WARNING: Sequences tr_B6H960_B6H960_PENRW_500485 and tr_A0A1V6SDG8_A0A1V6SDG8_9EURO_29845 are exactly identical! WARNING: Sequences tr_B6H960_B6H960_PENRW_500485 and tr_A0A1V6XDY8_A0A1V6XDY8_PENNA_60175 are exactly identical! WARNING: Sequences sp_P48461_PP11_DROME_7227 and tr_B4HH30_B4HH30_DROSE_7238 are exactly identical! WARNING: Sequences tr_H2MDU5_H2MDU5_ORYLA_8090 and tr_A0A3B1KB13_A0A3B1KB13_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_I3KG58_I3KG58_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_H2UTX1_H2UTX1_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_H3D1L0_H3D1L0_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_G3PJQ1_G3PJQ1_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_A0A087XG98_A0A087XG98_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2MML8_H2MML8_ORYLA_8090 and tr_A0A2I4CK26_A0A2I4CK26_9TELE_52670 are exactly identical! WARNING: Sequences tr_E3RS57_E3RS57_PYRTT_861557 and tr_B2WAU0_B2WAU0_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RS57_E3RS57_PYRTT_861557 and tr_A0A2W1F7S6_A0A2W1F7S6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_B4JG00_B4JG00_DROGR_7222 and tr_B5DWV1_B5DWV1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4JG00_B4JG00_DROGR_7222 and tr_B4NF11_B4NF11_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4JG00_B4JG00_DROGR_7222 and tr_B3N1R3_B3N1R3_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4JG00_B4JG00_DROGR_7222 and tr_B4LXX8_B4LXX8_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JG00_B4JG00_DROGR_7222 and tr_A0A1W4V4P6_A0A1W4V4P6_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4JKQ7_B4JKQ7_DROGR_7222 and tr_A0A1W4VKP3_A0A1W4VKP3_DROFC_30025 are exactly identical! WARNING: Sequences tr_G3GW88_G3GW88_CRIGR_10029 and tr_G5C2Y6_G5C2Y6_HETGA_10181 are exactly identical! WARNING: Sequences tr_G3GW88_G3GW88_CRIGR_10029 and tr_G7PLY0_G7PLY0_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3GW88_G3GW88_CRIGR_10029 and tr_A0A091CYK6_A0A091CYK6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3GW88_G3GW88_CRIGR_10029 and tr_A0A1U7T6S6_A0A1U7T6S6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3GW88_G3GW88_CRIGR_10029 and tr_A0A1V4JJV9_A0A1V4JJV9_PATFA_372326 are exactly identical! WARNING: Sequences tr_B0DBB2_B0DBB2_LACBS_486041 and tr_A0A0C9XB67_A0A0C9XB67_9AGAR_1095629 are exactly identical! WARNING: Sequences tr_A0A0E1RYJ2_A0A0E1RYJ2_COCIM_246410 and tr_E9DE99_E9DE99_COCPS_443226 are exactly identical! WARNING: Sequences tr_B6QKG0_B6QKG0_TALMQ_441960 and tr_B8MH21_B8MH21_TALSN_441959 are exactly identical! WARNING: Sequences tr_B6QKG0_B6QKG0_TALMQ_441960 and tr_A0A093UTC2_A0A093UTC2_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A0A2I2YUG9_A0A2I2YUG9_GORGO_9595 and tr_A0A2I3RUP3_A0A2I3RUP3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YUG9_A0A2I2YUG9_GORGO_9595 and tr_A0A2R9A8P7_A0A2R9A8P7_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NIN2_H2NIN2_PONAB_9601 and tr_F7GFT6_F7GFT6_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2NIN2_H2NIN2_PONAB_9601 and tr_U3D630_U3D630_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9UW86_PP1_NEUCR_367110 and tr_G4URK1_G4URK1_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q29B27_Q29B27_DROPS_46245 and tr_B4GZ62_B4GZ62_DROPE_7234 are exactly identical! WARNING: Sequences sp_Q27497_GLC7A_CAEEL_6239 and sp_Q61JR3_GLC7A_CAEBR_6238 are exactly identical! WARNING: Sequences sp_Q27497_GLC7A_CAEEL_6239 and tr_A0A2G5TIA1_A0A2G5TIA1_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A179V0Q2_A0A179V0Q2_BLAGS_559298 and tr_C5GCU1_C5GCU1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179V0Q2_A0A179V0Q2_BLAGS_559298 and tr_A0A2B7X2S9_A0A2B7X2S9_9EURO_2060905 are exactly identical! WARNING: Sequences tr_A0A179V0Q2_A0A179V0Q2_BLAGS_559298 and tr_A0A1J9PF79_A0A1J9PF79_9EURO_1658174 are exactly identical! WARNING: Sequences tr_C1GQI8_C1GQI8_PARBA_502779 and tr_F0UHR8_F0UHR8_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C1GQI8_C1GQI8_PARBA_502779 and tr_A0A1J9QFF3_A0A1J9QFF3_9EURO_1447872 are exactly identical! WARNING: Sequences tr_C1GQI8_C1GQI8_PARBA_502779 and tr_A0A2B7Y0H5_A0A2B7Y0H5_9EURO_1447875 are exactly identical! WARNING: Sequences tr_C1GQI8_C1GQI8_PARBA_502779 and tr_A0A2B7ZJG3_A0A2B7ZJG3_9EURO_73230 are exactly identical! WARNING: Sequences tr_A0A0F7V4F1_A0A0F7V4F1_TOXGV_432359 and tr_A0A074STX4_A0A074STX4_HAMHA_99158 are exactly identical! WARNING: Sequences tr_A0A2I3SL72_A0A2I3SL72_PANTR_9598 and tr_A0A2R9A958_A0A2R9A958_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9FBB6_F9FBB6_FUSOF_660025 and tr_N4TNJ0_N4TNJ0_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FBB6_F9FBB6_FUSOF_660025 and tr_X0D477_X0D477_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FBB6_F9FBB6_FUSOF_660025 and tr_A0A2H3T3Y9_A0A2H3T3Y9_FUSOX_5507 are exactly identical! WARNING: Sequences tr_E9F144_E9F144_METRA_655844 and tr_A0A0B4IDT3_A0A0B4IDT3_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F144_E9F144_METRA_655844 and tr_A0A0D9NUJ8_A0A0D9NUJ8_METAN_1291518 are exactly identical! WARNING: Sequences tr_E9F144_E9F144_METRA_655844 and tr_A0A179FX31_A0A179FX31_METCM_1380566 are exactly identical! WARNING: Sequences tr_E9F144_E9F144_METRA_655844 and tr_A0A166WBP6_A0A166WBP6_9HYPO_1081105 are exactly identical! WARNING: Sequences tr_Q4WJS6_Q4WJS6_ASPFU_330879 and tr_A1D4D0_A1D4D0_NEOFI_331117 are exactly identical! WARNING: Sequences tr_Q4WJS6_Q4WJS6_ASPFU_330879 and tr_A0A0S7E7L9_A0A0S7E7L9_9EURO_293939 are exactly identical! WARNING: Sequences tr_G5AF62_G5AF62_PHYSP_1094619 and tr_D0N1T1_D0N1T1_PHYIT_403677 are exactly identical! WARNING: Sequences tr_G5AF62_G5AF62_PHYSP_1094619 and tr_W2R483_W2R483_PHYPN_761204 are exactly identical! WARNING: Sequences tr_G5AF62_G5AF62_PHYSP_1094619 and tr_A0A0W8CGR4_A0A0W8CGR4_PHYNI_4790 are exactly identical! WARNING: Sequences tr_G5AF62_G5AF62_PHYSP_1094619 and tr_W2G6P0_W2G6P0_PHYPR_4792 are exactly identical! WARNING: Sequences tr_E4V320_E4V320_ARTGP_535722 and tr_D4APF9_D4APF9_ARTBC_663331 are exactly identical! WARNING: Sequences tr_E4V320_E4V320_ARTGP_535722 and tr_F2Q3K7_F2Q3K7_TRIEC_559882 are exactly identical! WARNING: Sequences tr_E4V320_E4V320_ARTGP_535722 and tr_A0A178EVP3_A0A178EVP3_TRIRU_5551 are exactly identical! WARNING: Sequences tr_A0A3B5PRJ7_A0A3B5PRJ7_XIPMA_8083 and tr_A0A087XN21_A0A087XN21_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QEL4_A0A3B5QEL4_XIPMA_8083 and tr_A0A087Y546_A0A087Y546_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QEL4_A0A3B5QEL4_XIPMA_8083 and tr_A0A2I4CKB7_A0A2I4CKB7_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4A5H9_M4A5H9_XIPMA_8083 and tr_I3IYM0_I3IYM0_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4A5H9_M4A5H9_XIPMA_8083 and tr_H3DIM0_H3DIM0_TETNG_99883 are exactly identical! WARNING: Sequences tr_M4A5H9_M4A5H9_XIPMA_8083 and tr_G3P7R9_G3P7R9_GASAC_69293 are exactly identical! WARNING: Sequences tr_M4A5H9_M4A5H9_XIPMA_8083 and tr_A0A2I4DCS3_A0A2I4DCS3_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4A5H9_M4A5H9_XIPMA_8083 and tr_W5ULR4_W5ULR4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A087ZV34_A0A087ZV34_APIME_7460 and tr_A0A2A3EA28_A0A2A3EA28_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AUP5_A0A088AUP5_APIME_7460 and tr_A0A2A3ER57_A0A2A3ER57_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NB14_A0A158NB14_ATTCE_12957 and tr_A0A026X1J8_A0A026X1J8_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A158NB14_A0A158NB14_ATTCE_12957 and tr_A0A151WXC7_A0A151WXC7_9HYME_64791 are exactly identical! WARNING: Sequences tr_C7YNM1_C7YNM1_NECH7_660122 and tr_A0A0D2XE52_A0A0D2XE52_FUSO4_426428 are exactly identical! WARNING: Sequences tr_C7YNM1_C7YNM1_NECH7_660122 and tr_A0A0M9F425_A0A0M9F425_FUSLA_179993 are exactly identical! WARNING: Sequences tr_C7YNM1_C7YNM1_NECH7_660122 and tr_A0A1B8ADC5_A0A1B8ADC5_FUSPO_36050 are exactly identical! WARNING: Sequences tr_C7YNM1_C7YNM1_NECH7_660122 and tr_A0A2H3H7J8_A0A2H3H7J8_FUSOX_327505 are exactly identical! WARNING: Sequences tr_C7YNM1_C7YNM1_NECH7_660122 and tr_A0A2L2TG82_A0A2L2TG82_9HYPO_56646 are exactly identical! WARNING: Sequences tr_I3K044_I3K044_ORENI_8128 and tr_G3NWT5_G3NWT5_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2SR71_H2SR71_TAKRU_31033 and tr_Q4RG22_Q4RG22_TETNG_99883 are exactly identical! WARNING: Sequences tr_H3GAS5_H3GAS5_PHYRM_164328 and tr_A0A329RCA8_A0A329RCA8_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A180H104_A0A180H104_PUCT1_630390 and tr_E3JXY4_E3JXY4_PUCGT_418459 are exactly identical! WARNING: Sequences tr_A0A180H104_A0A180H104_PUCT1_630390 and tr_A0A0L6UHU7_A0A0L6UHU7_9BASI_27349 are exactly identical! WARNING: Sequences tr_A0A180H104_A0A180H104_PUCT1_630390 and tr_A0A0L0VLI9_A0A0L0VLI9_9BASI_1165861 are exactly identical! WARNING: Sequences tr_G9P4S7_G9P4S7_HYPAI_452589 and tr_A0A0W7VAY0_A0A0W7VAY0_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9P4S7_G9P4S7_HYPAI_452589 and tr_A0A2T3ZNT2_A0A2T3ZNT2_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_G3XRW0_G3XRW0_ASPNA_380704 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_A0A117DUL6_A0A117DUL6_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_A0A146FPY6_A0A146FPY6_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_A0A1L9NCP2_A0A1L9NCP2_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_A0A317WJ60_A0A317WJ60_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XPC1_G7XPC1_ASPKW_1033177 and tr_A0A319A7B3_A0A319A7B3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G5AWL7_G5AWL7_HETGA_10181 and tr_G7PI87_G7PI87_MACFA_9541 are exactly identical! WARNING: Sequences tr_E5S0V1_E5S0V1_TRISP_6334 and tr_A0A0V1LUL5_A0A0V1LUL5_9BILA_6335 are exactly identical! WARNING: Sequences tr_G9N9N7_G9N9N7_HYPVG_413071 and tr_A0A0F9WTZ6_A0A0F9WTZ6_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9N9N7_G9N9N7_HYPVG_413071 and tr_A0A2T4AR44_A0A2T4AR44_TRIHA_983964 are exactly identical! WARNING: Sequences tr_F4NRU3_F4NRU3_BATDJ_684364 and tr_A0A177WAU7_A0A177WAU7_BATDE_403673 are exactly identical! WARNING: Sequences tr_G2QDX5_G2QDX5_MYCTT_573729 and tr_G4MUP5_G4MUP5_MAGO7_242507 are exactly identical! WARNING: Sequences tr_B5KFI8_B5KFI8_TAEGU_59729 and tr_A0A218V590_A0A218V590_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4X2E9_F4X2E9_ACREC_103372 and tr_A0A151I116_A0A151I116_9HYME_520822 are exactly identical! WARNING: Sequences tr_F4X2E9_F4X2E9_ACREC_103372 and tr_A0A151JYJ5_A0A151JYJ5_9HYME_34720 are exactly identical! WARNING: Sequences tr_F8PJD2_F8PJD2_SERL3_936435 and tr_V2X6R3_V2X6R3_MONRO_1381753 are exactly identical! WARNING: Sequences tr_F8PJD2_F8PJD2_SERL3_936435 and tr_A0A0D0A123_A0A0D0A123_9HOMO_930992 are exactly identical! WARNING: Sequences tr_F8PJD2_F8PJD2_SERL3_936435 and tr_A0A1Q3ECF7_A0A1Q3ECF7_LENED_5353 are exactly identical! WARNING: Sequences tr_F8PJD2_F8PJD2_SERL3_936435 and tr_A0A2H3C0A9_A0A2H3C0A9_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_G0NS60_G0NS60_CAEBE_135651 and tr_E3NH27_E3NH27_CAERE_31234 are exactly identical! WARNING: Sequences tr_G0NS60_G0NS60_CAEBE_135651 and sp_Q627N3_GLC7B_CAEBR_6238 are exactly identical! WARNING: Sequences tr_G0NS60_G0NS60_CAEBE_135651 and tr_A0A1I7T4U1_A0A1I7T4U1_9PELO_1561998 are exactly identical! WARNING: Sequences sp_Q5I085_PP1B_XENTR_8364 and tr_A0A1L8G146_A0A1L8G146_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q6NVU2_PPIG_XENTR_8364 and tr_A0A1L8HQR3_A0A1L8HQR3_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q6NVU2_PPIG_XENTR_8364 and tr_A0A1L8I148_A0A1L8I148_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3QCH4_E3QCH4_COLGM_645133 and tr_A0A066XIN9_A0A066XIN9_COLSU_1173701 are exactly identical! WARNING: Sequences tr_E3QCH4_E3QCH4_COLGM_645133 and tr_A0A166SS16_A0A166SS16_9PEZI_708197 are exactly identical! WARNING: Sequences tr_E3QCH4_E3QCH4_COLGM_645133 and tr_A0A162PVA4_A0A162PVA4_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A0Q9W7L1_A0A0Q9W7L1_DROVI_7244 and tr_B4L2I9_B4L2I9_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A0Q9W7L1_A0A0Q9W7L1_DROVI_7244 and tr_A0A0M5JDZ0_A0A0M5JDZ0_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4LYA0_B4LYA0_DROVI_7244 and tr_B4K877_B4K877_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4LYA0_B4LYA0_DROVI_7244 and tr_A0A0M4EET8_A0A0M4EET8_DROBS_30019 are exactly identical! WARNING: Sequences tr_G0RCY9_G0RCY9_HYPJQ_431241 and tr_A0A2T4CHS7_A0A2T4CHS7_TRILO_983965 are exactly identical! WARNING: Sequences tr_G0RCY9_G0RCY9_HYPJQ_431241 and tr_A0A2T4B4N7_A0A2T4B4N7_9HYPO_58853 are exactly identical! WARNING: Sequences tr_B3S6H7_B3S6H7_TRIAD_10228 and tr_A0A369SKV4_A0A369SKV4_9METZ_287889 are exactly identical! WARNING: Sequences tr_K9FQE5_K9FQE5_PEND2_1170229 and tr_W6PRA5_W6PRA5_PENRF_1365484 are exactly identical! WARNING: Sequences tr_K9FQE5_K9FQE5_PEND2_1170229 and tr_A0A0M8P2X8_A0A0M8P2X8_9EURO_229535 are exactly identical! WARNING: Sequences tr_L0PBH4_L0PBH4_PNEJ8_1209962 and tr_M7NIQ0_M7NIQ0_PNEMU_1069680 are exactly identical! WARNING: Sequences tr_L0PBH4_L0PBH4_PNEJ8_1209962 and tr_A0A0W4ZRS0_A0A0W4ZRS0_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_L2FRF2_L2FRF2_COLFN_1213859 and tr_T0L9N3_T0L9N3_COLGC_1237896 are exactly identical! WARNING: Sequences tr_S8F0D7_S8F0D7_FOMPI_743788 and tr_A0A165SFE8_A0A165SFE8_9APHY_1314783 are exactly identical! WARNING: Sequences tr_S0E0H9_S0E0H9_GIBF5_1279085 and tr_A0A365MM27_A0A365MM27_GIBIN_948311 are exactly identical! WARNING: Sequences tr_M2QU39_M2QU39_CERS8_914234 and tr_A0A1X6MX91_A0A1X6MX91_9APHY_670580 are exactly identical! WARNING: Sequences tr_M2U8P4_M2U8P4_COCH5_701091 and tr_W6ZCI4_W6ZCI4_COCMI_930090 are exactly identical! WARNING: Sequences tr_U5HJ38_U5HJ38_USTV1_683840 and tr_A0A238FKF7_A0A238FKF7_9BASI_269621 are exactly identical! WARNING: Sequences tr_U5HJ38_U5HJ38_USTV1_683840 and tr_A0A2X0M815_A0A2X0M815_9BASI_796604 are exactly identical! WARNING: Sequences tr_U5HJ38_U5HJ38_USTV1_683840 and tr_A0A2X0LIH5_A0A2X0LIH5_9BASI_289078 are exactly identical! WARNING: Sequences tr_W5KLS5_W5KLS5_ASTMX_7994 and tr_A0A1S3RAH8_A0A1S3RAH8_SALSA_8030 are exactly identical! WARNING: Sequences tr_W9VWW1_W9VWW1_9EURO_1182544 and tr_A0A1C1D038_A0A1C1D038_9EURO_86049 are exactly identical! WARNING: Sequences tr_A0A017S3P9_A0A017S3P9_9EURO_1388766 and tr_A0A1E3BSS8_A0A1E3BSS8_9EURO_573508 are exactly identical! WARNING: Sequences tr_A0A017S3P9_A0A017S3P9_9EURO_1388766 and tr_A0A1L9VRL3_A0A1L9VRL3_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A059JDE1_A0A059JDE1_9EURO_1215338 and tr_A0A0J6YDG8_A0A0J6YDG8_COCIT_404692 are exactly identical! WARNING: Sequences tr_A0A016UG19_A0A016UG19_9BILA_53326 and tr_A0A0K0DFM3_A0A0K0DFM3_ANGCA_6313 are exactly identical! WARNING: Sequences tr_S7RHQ0_S7RHQ0_GLOTA_670483 and tr_A0A165RDT0_A0A165RDT0_9HOMO_1314782 are exactly identical! WARNING: Sequences tr_A0A0F0IDE3_A0A0F0IDE3_ASPPU_1403190 and tr_A0A0L1IMF0_A0A0L1IMF0_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_A0A0F0IDE3_A0A0F0IDE3_ASPPU_1403190 and tr_A0A1F7ZV47_A0A1F7ZV47_9EURO_109264 are exactly identical! WARNING: Sequences tr_A0A0F0IDE3_A0A0F0IDE3_ASPPU_1403190 and tr_A0A1S9DM34_A0A1S9DM34_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0F0IDE3_A0A0F0IDE3_ASPPU_1403190 and tr_A0A2G7FTE7_A0A2G7FTE7_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0K0FFC5_A0A0K0FFC5_STRVS_75913 and tr_A0A0N5C188_A0A0N5C188_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K8LND1_A0A0K8LND1_9EURO_91492 and tr_A0A397GM06_A0A397GM06_9EURO_41047 are exactly identical! WARNING: Sequences tr_A0A0N4TZ85_A0A0N4TZ85_BRUPA_6280 and tr_A0A1I7VYE6_A0A1I7VYE6_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A151NS93_A0A151NS93_ALLMI_8496 and tr_A0A1U7RBY7_A0A1U7RBY7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ET12_A0A091ET12_CORBR_85066 and tr_A0A093QA43_A0A093QA43_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091ET12_A0A091ET12_CORBR_85066 and tr_A0A091G3I5_A0A091G3I5_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091ET12_A0A091ET12_CORBR_85066 and tr_A0A093HEB4_A0A093HEB4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091ET12_A0A091ET12_CORBR_85066 and tr_A0A091HIY1_A0A091HIY1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091IS83_A0A091IS83_EGRGA_188379 and tr_A0A0A0A532_A0A0A0A532_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IYN6_A0A091IYN6_EGRGA_188379 and tr_A0A091UMC8_A0A091UMC8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IYN6_A0A091IYN6_EGRGA_188379 and tr_A0A087RB01_A0A087RB01_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IYN6_A0A091IYN6_EGRGA_188379 and tr_A0A091WMU3_A0A091WMU3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0N1IGW3_A0A0N1IGW3_PAPMA_76193 and tr_A0A0N0P9V8_A0A0N0P9V8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A194RQB4_A0A194RQB4_PAPMA_76193 and tr_A0A194PN42_A0A194PN42_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0L6WR39_A0A0L6WR39_9AGAR_1306850 and tr_A0A369K8W6_A0A369K8W6_HYPMA_39966 are exactly identical! WARNING: Sequences tr_A0A0L6WR39_A0A0L6WR39_9AGAR_1306850 and tr_A0A2H3DRX6_A0A2H3DRX6_ARMGA_47427 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V1CU36_A0A0V1CU36_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V0W5L3_A0A0V0W5L3_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V0UNE8_A0A0V0UNE8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V1KVG4_A0A0V1KVG4_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V0ZRB4_A0A0V0ZRB4_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V1NK40_A0A0V1NK40_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RHH2_A0A0V0RHH2_9BILA_6336 and tr_A0A0V0TGL6_A0A0V0TGL6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V1DD90_A0A0V1DD90_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V0X7I9_A0A0V0X7I9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V0VU07_A0A0V0VU07_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V1AGC0_A0A0V1AGC0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V1PFL0_A0A0V1PFL0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SN49_A0A0V0SN49_9BILA_6336 and tr_A0A0V0UGU4_A0A0V0UGU4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1IX19_A0A0V1IX19_TRIPS_6337 and tr_A0A0V1MNI1_A0A0V1MNI1_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0P1BPF8_A0A0P1BPF8_9BASI_401625 and tr_A0A316W5P1_A0A316W5P1_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A135TJG2_A0A135TJG2_9PEZI_1209931 and tr_A0A1G4BN25_A0A1G4BN25_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A194XMW9_A0A194XMW9_9HELO_149040 and tr_A0A1L7XMD2_A0A1L7XMD2_9HELO_576137 are exactly identical! WARNING: Sequences tr_A0A164N0T8_A0A164N0T8_9HOMO_1314777 and tr_A0A166CH98_A0A166CH98_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A177VPN4_A0A177VPN4_9BASI_13291 and tr_A0A177URI0_A0A177URI0_9BASI_117179 are exactly identical! WARNING: Sequences tr_A0A195DYV1_A0A195DYV1_9HYME_471704 and tr_A0A151I2K4_A0A151I2K4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A195DYV1_A0A195DYV1_9HYME_471704 and tr_A0A151JY16_A0A151JY16_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1A6A7Q4_A0A1A6A7Q4_9TREE_1296121 and tr_A0A1B9IIW7_A0A1B9IIW7_9TREE_1331196 are exactly identical! WARNING: Sequences tr_A0A1A6A7Q4_A0A1A6A7Q4_9TREE_1296121 and tr_A0A1B9GWV6_A0A1B9GWV6_9TREE_1296120 are exactly identical! WARNING: Sequences tr_A0A1A6A7Q4_A0A1A6A7Q4_9TREE_1296121 and tr_A0A1B9I9N4_A0A1B9I9N4_9TREE_1296096 are exactly identical! WARNING: Sequences tr_A0A1S3NKD2_A0A1S3NKD2_SALSA_8030 and tr_A0A060X1P8_A0A060X1P8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SAS8_A0A1S3SAS8_SALSA_8030 and tr_A0A060X3J8_A0A060X3J8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B8DWT1_A0A1B8DWT1_9PEZI_1524831 and tr_A0A1B8CBN2_A0A1B8CBN2_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A1B8DWT1_A0A1B8DWT1_9PEZI_1524831 and tr_A0A1B8F0V4_A0A1B8F0V4_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1B8DWT1_A0A1B8DWT1_9PEZI_1524831 and tr_A0A2T3B0D7_A0A2T3B0D7_AMORE_857342 are exactly identical! WARNING: Sequences tr_A0A1B7MVJ5_A0A1B7MVJ5_9HOMO_1314800 and tr_A0A1J8R1U3_A0A1J8R1U3_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1F5LF78_A0A1F5LF78_9EURO_1835702 and tr_A0A1V6Q4N2_A0A1V6Q4N2_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L9P4Z5_A0A1L9P4Z5_ASPVE_1036611 and tr_A0A1L9TSF0_A0A1L9TSF0_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A1M2W4Y3_A0A1M2W4Y3_TRAPU_154538 and tr_A0A2R6S407_A0A2R6S407_9APHY_98765 are exactly identical! WARNING: Sequences tr_A0A1M2W4Y3_A0A1M2W4Y3_TRAPU_154538 and tr_A0A1Y2I9F6_A0A1Y2I9F6_PYCCO_1353009 are exactly identical! WARNING: Sequences tr_A0A1M2W4Y3_A0A1M2W4Y3_TRAPU_154538 and tr_A0A2G8RP61_A0A2G8RP61_9APHY_1077348 are exactly identical! WARNING: Sequences tr_A0A1M2W4Y3_A0A1M2W4Y3_TRAPU_154538 and tr_A0A371CQ93_A0A371CQ93_9APHY_139420 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A1L9WXU0_A0A1L9WXU0_ASPAC_690307 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A1R3RS19_A0A1R3RS19_ASPC5_602072 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A317XAU8_A0A317XAU8_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A317WAM8_A0A317WAM8_9EURO_1448321 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A319DFZ5_A0A319DFZ5_9EURO_1448320 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A319CF93_A0A319CF93_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A319A0N0_A0A319A0N0_9EURO_1450539 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A319E0Y6_A0A319E0Y6_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A2V5IBN4_A0A2V5IBN4_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A395HQB8_A0A395HQB8_9EURO_1450537 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A395GY42_A0A395GY42_9EURO_1448316 are exactly identical! WARNING: Sequences tr_A0A1L9UTG7_A0A1L9UTG7_9EURO_767769 and tr_A0A2V5GUW1_A0A2V5GUW1_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V8U9I4_A0A1V8U9I4_9PEZI_1974281 and tr_A0A1V8TMN7_A0A1V8TMN7_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1Y1UWI6_A0A1Y1UWI6_9FUNG_1754191 and tr_A0A1Y2AN48_A0A1Y2AN48_9FUNG_1754190 are exactly identical! WARNING: Sequences tr_A0A1Y1UWI6_A0A1Y1UWI6_9FUNG_1754191 and tr_A0A1Y1X8F1_A0A1Y1X8F1_9FUNG_1754192 are exactly identical! WARNING: Sequences tr_A0A2H3EZ46_A0A2H3EZ46_9HELO_946125 and tr_A0A2H3F1V1_A0A2H3F1V1_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A2H3EZ46_A0A2H3EZ46_9HELO_946125 and tr_A0A218ZDN9_A0A218ZDN9_9HELO_503106 are exactly identical! WARNING: Sequences tr_A0A2H3EZ46_A0A2H3EZ46_9HELO_946125 and tr_A0A2V1CH89_A0A2V1CH89_9HELO_1485229 are exactly identical! WARNING: Sequences tr_A0A2I2F6L4_A0A2I2F6L4_9EURO_41067 and tr_A0A2J5HDI7_A0A2J5HDI7_9EURO_482145 are exactly identical! WARNING: Sequences tr_A0A2S7PG25_A0A2S7PG25_9HELO_2070414 and tr_A0A2S7PP42_A0A2S7PP42_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2P7YPL5_A0A2P7YPL5_9ASCO_418784 and tr_A0A2V1AQB1_A0A2V1AQB1_9ASCO_45357 are exactly identical! WARNING: Sequences tr_A0A2G4T415_A0A2G4T415_9FUNG_1340429 and tr_A0A367JIM0_A0A367JIM0_9FUNG_86630 are exactly identical! WARNING: Duplicate sequences found: 306 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.reduced.phy Alignment comprises 1 partitions and 327 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 327 Gaps: 2.53 % Invariant sites: 28.13 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/3_mltree/P62140.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 82 / 6560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -57755.041942 [00:00:00 -57755.041942] Initial branch length optimization [00:00:01 -33201.039154] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -32700.192119 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.419282,0.149817) (0.381833,0.298231) (0.119377,1.994903) (0.079508,7.359800) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P62140/4_raxmlng_ancestral/P62140.raxml.log Analysis started: 12-Jul-2021 17:47:44 / finished: 12-Jul-2021 17:48:24 Elapsed time: 39.986 seconds Consumed energy: 2.618 Wh