RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:05:45 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/2_msa/P61011_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/3_mltree/P61011.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646345 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/2_msa/P61011_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 504 sites WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_U3JTZ4_U3JTZ4_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A091F574_A0A091F574_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A091JRA4_A0A091JRA4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A093Q632_A0A093Q632_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A091V1L1_A0A091V1L1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A093HJV3_A0A093HJV3_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A091VGX0_A0A091VGX0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A091GVQ1_A0A091GVQ1_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A0A0AMW9_A0A0A0AMW9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A2I0MPV3_A0A2I0MPV3_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A093GR28_A0A093GR28_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A1V4KFF8_A0A1V4KFF8_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A218VEQ7_A0A218VEQ7_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C6G6_E1C6G6_CHICK_9031 and tr_A0A226PX23_A0A226PX23_COLVI_9014 are exactly identical! WARNING: Sequences sp_P14576_SRP54_MOUSE_10090 and tr_A0A1U7QWF9_A0A1U7QWF9_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2I2ZVX9_A0A2I2ZVX9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and sp_Q5R4R6_SRP54_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and sp_P61010_SRP54_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_H2Q862_H2Q862_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_F6PG90_F6PG90_ORNAN_9258 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_F7ASN4_F7ASN4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_W5PB70_W5PB70_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_I3MQS5_I3MQS5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_H0X6D3_H0X6D3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and sp_P61011_SRP54_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_G5B113_G5B113_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_G3T8K8_G3T8K8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_F2Z5M9_F2Z5M9_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_G1MAQ1_G1MAQ1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_G7PA28_G7PA28_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and sp_Q2T9U1_SRP54_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A0D9RSS1_A0A0D9RSS1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2R8ZJZ7_A0A2R8ZJZ7_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2U4AF52_A0A2U4AF52_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2U3VWT8_A0A2U3VWT8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2Y9L698_A0A2Y9L698_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2Y9N4U6_A0A2Y9N4U6_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A2Y9F097_A0A2Y9F097_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A384CC22_A0A384CC22_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YXY9_M3YXY9_MUSPF_9669 and tr_A0A384A0Q6_A0A384A0Q6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3ZA05_M3ZA05_NOMLE_61853 and tr_F7GMY3_F7GMY3_CALJA_9483 are exactly identical! WARNING: Sequences tr_B6QFR5_B6QFR5_TALMQ_441960 and tr_A0A093UTT1_A0A093UTT1_TALMA_1077442 are exactly identical! WARNING: Sequences tr_Q1K6J6_Q1K6J6_NEUCR_367110 and tr_G4UG43_G4UG43_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q29FC0_Q29FC0_DROPS_46245 and tr_B4H1J1_B4H1J1_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NQI5_B8NQI5_ASPFN_332952 and tr_A0A1S9DRW1_A0A1S9DRW1_ASPOZ_5062 are exactly identical! WARNING: Sequences sp_Q6AYB5_SRP54_RAT_10116 and tr_A0A1S3A6Q2_A0A1S3A6Q2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_C6HEH2_C6HEH2_AJECH_544712 and tr_F0UQ82_F0UQ82_AJEC8_544711 are exactly identical! WARNING: Sequences tr_J5JIB8_J5JIB8_BEAB2_655819 and tr_A0A0A2VBG7_A0A0A2VBG7_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J5JIB8_J5JIB8_BEAB2_655819 and tr_A0A167L3B5_A0A167L3B5_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_M4AV89_M4AV89_XIPMA_8083 and tr_A0A087XSZ4_A0A087XSZ4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NAE8_A0A158NAE8_ATTCE_12957 and tr_F4WMJ0_F4WMJ0_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NAE8_A0A158NAE8_ATTCE_12957 and tr_A0A151J0I4_A0A151J0I4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NAE8_A0A158NAE8_ATTCE_12957 and tr_A0A151I0Y6_A0A151I0Y6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NAE8_A0A158NAE8_ATTCE_12957 and tr_A0A195EWA8_A0A195EWA8_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A0E0FTT1_A0A0E0FTT1_ORYNI_4536 and tr_B8AA60_B8AA60_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0HGR9_A0A0E0HGR9_ORYNI_4536 and tr_A2Y6D8_A2Y6D8_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0K0IYX1_A0A0K0IYX1_BRUMA_6279 and tr_A0A0N4TYP4_A0A0N4TYP4_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A2QUP4_A2QUP4_ASPNC_425011 and tr_G3XLR3_G3XLR3_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QUP4_A2QUP4_ASPNC_425011 and tr_A0A319AT06_A0A319AT06_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A0A1D5QF89_A0A1D5QF89_MACMU_9544 and tr_A0A2K6AR01_A0A2K6AR01_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7XN10_G7XN10_ASPKW_1033177 and tr_A0A117E1D5_A0A117E1D5_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XN10_G7XN10_ASPKW_1033177 and tr_A0A146FP27_A0A146FP27_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XN10_G7XN10_ASPKW_1033177 and tr_A0A1L9NG53_A0A1L9NG53_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XN10_G7XN10_ASPKW_1033177 and tr_A0A317VN66_A0A317VN66_9EURO_1448314 are exactly identical! WARNING: Sequences tr_F4NXE8_F4NXE8_BATDJ_684364 and tr_A0A177WIL0_A0A177WIL0_BATDE_403673 are exactly identical! WARNING: Sequences tr_I1QE70_I1QE70_ORYGL_4538 and tr_A0A0E0C8B9_A0A0E0C8B9_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1QE70_I1QE70_ORYGL_4538 and tr_A0A0D3EUK9_A0A0D3EUK9_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1QE70_I1QE70_ORYGL_4538 and tr_A0A0D9YFL2_A0A0D9YFL2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_H0ZNZ4_H0ZNZ4_TAEGU_59729 and tr_U3IRN0_U3IRN0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A0E0N342_A0A0E0N342_ORYRU_4529 and tr_Q8S1I8_Q8S1I8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0PPS6_A0A0E0PPS6_ORYRU_4529 and tr_Q7XB57_Q7XB57_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F2SYS3_F2SYS3_TRIRC_559305 and tr_A0A178F6R5_A0A178F6R5_TRIRU_5551 are exactly identical! WARNING: Sequences tr_C4VAG0_C4VAG0_NOSCE_578460 and tr_A0A0F9WEA0_A0A0F9WEA0_9MICR_40302 are exactly identical! WARNING: Sequences tr_W7MEI3_W7MEI3_GIBM7_334819 and tr_A0A2K0WB66_A0A2K0WB66_GIBNY_42673 are exactly identical! WARNING: Sequences tr_A0A0D2XYF3_A0A0D2XYF3_FUSO4_426428 and tr_X0CWE0_X0CWE0_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_A0A0D2XYF3_A0A0D2XYF3_FUSO4_426428 and tr_A0A2H3GUI7_A0A2H3GUI7_FUSOX_327505 are exactly identical! WARNING: Sequences tr_M2UX69_M2UX69_COCH5_701091 and tr_W6YZU0_W6YZU0_COCCA_930089 are exactly identical! WARNING: Sequences tr_W2R752_W2R752_PHYPN_761204 and tr_W2GQW7_W2GQW7_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015IY23_A0A015IY23_9GLOM_1432141 and tr_A0A2H5QYN8_A0A2H5QYN8_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2I3NHF6_A0A2I3NHF6_PAPAN_9555 and tr_A0A2K5M6E1_A0A2K5M6E1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3NHF6_A0A2I3NHF6_PAPAN_9555 and tr_A0A2K6A873_A0A2K6A873_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A078HSD9_A0A078HSD9_BRANA_3708 and tr_A0A0D3CPB9_A0A0D3CPB9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094GN92_A0A094GN92_9PEZI_1420912 and tr_A0A1B8GJ66_A0A1B8GJ66_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094GN92_A0A094GN92_9PEZI_1420912 and tr_A0A1B8C4J8_A0A1B8C4J8_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A094GN92_A0A094GN92_9PEZI_1420912 and tr_A0A1B8F4N6_A0A1B8F4N6_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A0B4IEV2_A0A0B4IEV2_METMF_1276143 and tr_A0A0D9NL77_A0A0D9NL77_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A0F4GJW0_A0A0F4GJW0_9PEZI_1047168 and tr_A0A1X7S1V0_A0A1X7S1V0_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0F8U8R8_A0A0F8U8R8_9EURO_308745 and tr_A0A2T5LXJ6_A0A2T5LXJ6_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A151NKE1_A0A151NKE1_ALLMI_8496 and tr_A0A3Q0GD28_A0A3Q0GD28_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V1D9F9_A0A0V1D9F9_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V0VE16_A0A0V0VE16_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V1LB67_A0A0V1LB67_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V0ZG49_A0A0V0ZG49_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V1P705_A0A0V1P705_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RIK6_A0A0V0RIK6_9BILA_6336 and tr_A0A0V0U3F4_A0A0V0U3F4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MUH9_A0A0V1MUH9_9BILA_268474 and tr_A0A0V1HC50_A0A0V1HC50_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A101MRQ8_A0A101MRQ8_9EURO_48697 and tr_A0A1V6NMY8_A0A1V6NMY8_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A101MRQ8_A0A101MRQ8_9EURO_48697 and tr_A0A1V6R7Y0_A0A1V6R7Y0_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A1S3Y640_A0A1S3Y640_TOBAC_4097 and tr_A0A1U7X8E1_A0A1U7X8E1_NICSY_4096 are exactly identical! WARNING: Sequences tr_B5DG49_B5DG49_SALSA_8030 and tr_A0A060WGZ4_A0A060WGZ4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2G2Y8J2_A0A2G2Y8J2_CAPAN_4072 and tr_A0A2G3B378_A0A2G3B378_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A317WIS8_A0A317WIS8_9EURO_1450535 and tr_A0A395H516_A0A395H516_9EURO_1448316 are exactly identical! WARNING: Sequences tr_A0A319C0G5_A0A319C0G5_9EURO_1448315 and tr_A0A2V5J877_A0A2V5J877_9EURO_1450541 are exactly identical! WARNING: Duplicate sequences found: 103 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.reduced.phy Alignment comprises 1 partitions and 504 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 504 Gaps: 5.27 % Invariant sites: 2.78 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/3_mltree/P61011.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 126 / 10080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -141233.327497 [00:00:00 -141233.327497] Initial branch length optimization [00:00:00 -141128.887713] Model parameter optimization (eps = 0.100000) [00:00:34] Tree #1, final logLikelihood: -140878.385007 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.218598,0.298615) (0.267571,0.492447) (0.267690,0.985047) (0.246141,2.190904) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P61011/4_raxmlng_ancestral/P61011.raxml.log Analysis started: 02-Jun-2021 18:05:45 / finished: 02-Jun-2021 18:06:24 Elapsed time: 39.225 seconds Consumed energy: 3.353 Wh