RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jul-2021 13:21:57 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/2_msa/P58304_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/3_mltree/P58304.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626690117 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/2_msa/P58304_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 361 sites WARNING: Sequences tr_B4Q632_B4Q632_DROSI_7240 and tr_B4ICW1_B4ICW1_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5P641_A0A1D5P641_CHICK_9031 and sp_Q9IAL1_VSX2_CHICK_9031 are exactly identical! WARNING: Sequences tr_R4GGE5_R4GGE5_CHICK_9031 and tr_A0A091UNZ2_A0A091UNZ2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_R4GGE5_R4GGE5_CHICK_9031 and tr_A0A087R8H3_A0A087R8H3_APTFO_9233 are exactly identical! WARNING: Sequences tr_R4GGE5_R4GGE5_CHICK_9031 and tr_A0A091WS91_A0A091WS91_OPIHO_30419 are exactly identical! WARNING: Sequences tr_R4GGE5_R4GGE5_CHICK_9031 and tr_A0A093GFW3_A0A093GFW3_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q8C8B0_ALX1_MOUSE_10090 and sp_Q63087_ALX1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y3Z2_M3Y3Z2_MUSPF_9669 and tr_A0A2Y9JUX1_A0A2Y9JUX1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_A0A2J8SBJ1_A0A2J8SBJ1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_F6YCG6_F6YCG6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_G7PYK7_G7PYK7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_A0A0A0MW01_A0A0A0MW01_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_A0A0D9REX2_A0A0D9REX2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_A0A2K5MZL8_A0A2K5MZL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QR43_G1QR43_NOMLE_61853 and tr_A0A2K5YMP4_A0A2K5YMP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_G3QD58_G3QD58_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_H2NI70_H2NI70_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_H2Q6K1_H2Q6K1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and sp_Q15699_ALX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_G7PIK8_G7PIK8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A096MXS2_A0A096MXS2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K5NLC8_A0A2K5NLC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K6CG92_A0A2K6CG92_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2K5YFN0_A0A2K5YFN0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QZZ6_G1QZZ6_NOMLE_61853 and tr_A0A2R9B0M3_A0A2R9B0M3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and tr_H2PZM0_H2PZM0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QN78_G3QN78_GORGO_9595 and sp_O95076_ALX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and sp_A2T711_RAX2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RFJ8_G3RFJ8_GORGO_9595 and sp_Q96IS3_RAX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RZZ4_G3RZZ4_GORGO_9595 and tr_H2QEL5_H2QEL5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RZZ4_G3RZZ4_GORGO_9595 and sp_Q9Y2V3_RX_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SBL5_G3SBL5_GORGO_9595 and tr_A0A2I3S298_A0A2I3S298_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SBL5_G3SBL5_GORGO_9595 and sp_Q96QS3_ARX_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SBL5_G3SBL5_GORGO_9595 and tr_A0A0D9RPA5_A0A0D9RPA5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3SBL5_G3SBL5_GORGO_9595 and tr_A0A2K5LYS0_A0A2K5LYS0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3SBL5_G3SBL5_GORGO_9595 and tr_A0A2K6DJD2_A0A2K6DJD2_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q28ZR8_Q28ZR8_DROPS_46245 and tr_B4GGV7_B4GGV7_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29N35_Q29N35_DROPS_46245 and tr_B4G8B0_B4G8B0_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3T6W2_A0A2I3T6W2_PANTR_9598 and tr_A0A2R9BYB8_A0A2R9BYB8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_G3TBH5_G3TBH5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_A0A287AYX1_A0A287AYX1_PIG_9823 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_A0A2U3WGP3_A0A2U3WGP3_ODORO_9708 are exactly identical! WARNING: Sequences tr_F6VW17_F6VW17_HORSE_9796 and tr_A0A2Y9EA01_A0A2Y9EA01_TRIMA_127582 are exactly identical! WARNING: Sequences tr_W5Q1B1_W5Q1B1_SHEEP_9940 and tr_E1BKK2_E1BKK2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5QKP6_A0A3B5QKP6_XIPMA_8083 and tr_A0A087XCV1_A0A087XCV1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZYK6_M3ZYK6_XIPMA_8083 and tr_A0A087Y4L5_A0A087Y4L5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AMF9_A0A088AMF9_APIME_7460 and tr_A0A2A3EH84_A0A2A3EH84_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P0P0_A0A158P0P0_ATTCE_12957 and tr_A0A195DX54_A0A195DX54_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158P0P0_A0A158P0P0_ATTCE_12957 and tr_A0A195B1D4_A0A195B1D4_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A2R8N850_A0A2R8N850_CALJA_9483 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A286ZPC4_A0A286ZPC4_PIG_9823 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A337RWL0_A0A337RWL0_FELCA_9685 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A1U8CC06_A0A1U8CC06_MESAU_10036 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A2U4AQS1_A0A2U4AQS1_TURTR_9739 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A2Y9JS14_A0A2Y9JS14_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H0XRJ8_H0XRJ8_OTOGA_30611 and tr_A0A2Y9S0K6_A0A2Y9S0K6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A0J9YBJ8_A0A0J9YBJ8_BRUMA_6279 and tr_A0A0N4TKG0_A0A0N4TKG0_BRUPA_6280 are exactly identical! WARNING: Sequences tr_F7AP06_F7AP06_MACMU_9544 and tr_A0A096NRC0_A0A096NRC0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7AP06_F7AP06_MACMU_9544 and tr_A0A0D9RJE8_A0A0D9RJE8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7AP06_F7AP06_MACMU_9544 and tr_A0A2K5NPF5_A0A2K5NPF5_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7AP06_F7AP06_MACMU_9544 and tr_A0A2K6DJW8_A0A2K6DJW8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0YRH0_H0YRH0_TAEGU_59729 and tr_A0A087QMY0_A0A087QMY0_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZC32_H0ZC32_TAEGU_59729 and tr_U3K7J7_U3K7J7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZC32_H0ZC32_TAEGU_59729 and tr_A0A091F7C7_A0A091F7C7_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A337RTG8_A0A337RTG8_FELCA_9685 and tr_A0A2U3VKS0_A0A2U3VKS0_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A337RTG8_A0A337RTG8_FELCA_9685 and tr_A0A2U3Z4Y0_A0A2U3Z4Y0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A044UT23_A0A044UT23_ONCVO_6282 and tr_A0A182ECL9_A0A182ECL9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A2K6WN75_A0A2K6WN75_ONCVO_6282 and tr_A0A182EA90_A0A182EA90_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096MUC3_A0A096MUC3_PAPAN_9555 and tr_A0A0D9RZZ6_A0A0D9RZZ6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MUC3_A0A096MUC3_PAPAN_9555 and tr_A0A2K5NEE2_A0A2K5NEE2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A0D9S6H7_A0A0D9S6H7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A2K5MU88_A0A2K5MU88_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NH47_A0A096NH47_PAPAN_9555 and tr_A0A2K5YZ09_A0A2K5YZ09_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0K0G2Z4_A0A0K0G2Z4_STRVS_75913 and tr_A0A0N5CGR2_A0A0N5CGR2_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151LYQ9_A0A151LYQ9_ALLMI_8496 and tr_A0A1U7S7Z5_A0A1U7S7Z5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091J9V4_A0A091J9V4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A091VLU5_A0A091VLU5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A093HBJ4_A0A093HBJ4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091F0W8_A0A091F0W8_CORBR_85066 and tr_A0A0A0AXJ7_A0A0A0AXJ7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A093PYP2_A0A093PYP2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A091W020_A0A091W020_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A087R4U3_A0A087R4U3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A091VDH3_A0A091VDH3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A099YW85_A0A099YW85_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A091GVS8_A0A091GVS8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A0A0ALT5_A0A0A0ALT5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F388_A0A091F388_CORBR_85066 and tr_A0A091IBL5_A0A091IBL5_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0LTL8_A0A2I0LTL8_COLLI_8932 and tr_A0A1V4KPR7_A0A1V4KPR7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3T500_A0A1S3T500_SALSA_8030 and tr_A0A060WCR3_A0A060WCR3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MZT8_A0A226MZT8_CALSU_9009 and tr_A0A226PBN4_A0A226PBN4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N5U7_A0A226N5U7_CALSU_9009 and tr_A0A226P0L8_A0A226P0L8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NH27_A0A226NH27_CALSU_9009 and tr_A0A226P0U3_A0A226P0U3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RK93_A0A2D0RK93_ICTPU_7998 and tr_A0A2D0RLB6_A0A2D0RLB6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3UZG2_A0A2U3UZG2_TURTR_9739 and tr_A0A2Y9N9U3_A0A2Y9N9U3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9LER6_A0A2Y9LER6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A2Y9F3H7_A0A2Y9F3H7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V8G0_A0A2U3V8G0_TURTR_9739 and tr_A0A383YSY1_A0A383YSY1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BHM4_A0A2U4BHM4_TURTR_9739 and tr_A0A2Y9NYT7_A0A2Y9NYT7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9IUQ3_A0A2Y9IUQ3_ENHLU_391180 and tr_A0A384BUQ0_A0A384BUQ0_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2Y9P0U9_A0A2Y9P0U9_DELLE_9749 and tr_A0A2Y9SD92_A0A2Y9SD92_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PRZ1_A0A2Y9PRZ1_DELLE_9749 and tr_A0A2Y9FLV2_A0A2Y9FLV2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PRZ1_A0A2Y9PRZ1_DELLE_9749 and tr_A0A384A1U7_A0A384A1U7_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 102 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.reduced.phy Alignment comprises 1 partitions and 361 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 361 Gaps: 45.76 % Invariant sites: 1.66 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/3_mltree/P58304.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 91 / 7280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -241747.598242 [00:00:00 -241747.598242] Initial branch length optimization [00:00:01 -112687.583633] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -112480.439756 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.169344,0.196509) (0.167054,0.345371) (0.227799,0.738409) (0.435802,1.699894) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P58304/4_raxmlng_ancestral/P58304.raxml.log Analysis started: 19-Jul-2021 13:21:57 / finished: 19-Jul-2021 13:22:42 Elapsed time: 45.262 seconds