RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jun-2021 19:47:04 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/2_msa/P58012_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/3_mltree/P58012.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1624121224 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/2_msa/P58012_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 376 sites WARNING: Sequences sp_Q90964_FOXG1_CHICK_9031 and tr_A0A0Q3PIJ4_A0A0Q3PIJ4_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q60987_FOXG1_MOUSE_10090 and sp_Q00939_FOXG1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q60987_FOXG1_MOUSE_10090 and tr_A0A1U8C4P8_A0A1U8C4P8_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QG51_G3QG51_GORGO_9595 and tr_A0A2R9AUY3_A0A2R9AUY3_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q28X48_Q28X48_DROPS_46245 and tr_B4H512_B4H512_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QK56_H2QK56_PANTR_9598 and sp_O43638_FOXS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QK56_H2QK56_PANTR_9598 and tr_A0A2R9ARS5_A0A2R9ARS5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QRZ5_H2QRZ5_PANTR_9598 and tr_A0A2R8ZMY1_A0A2R8ZMY1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R467_H2R467_PANTR_9598 and sp_O00358_FOXE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A3B5QXG1_A0A3B5QXG1_XIPMA_8083 and tr_A0A087YBY6_A0A087YBY6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NRJ2_A0A158NRJ2_ATTCE_12957 and tr_A0A151I1B7_A0A151I1B7_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0J9XSL8_A0A0J9XSL8_BRUMA_6279 and tr_A0A158PPX8_A0A158PPX8_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1D5RI96_A0A1D5RI96_MACMU_9544 and tr_A0A2K6D0W0_A0A2K6D0W0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5RI96_A0A1D5RI96_MACMU_9544 and tr_A0A2K5XRU4_A0A2K5XRU4_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6SXY5_F6SXY5_MACMU_9544 and tr_A0A2K6ASH0_A0A2K6ASH0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7D313_F7D313_MACMU_9544 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HUG0_F7HUG0_CALJA_9483 and tr_A0A1S2ZBN4_A0A1S2ZBN4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A287AFQ6_A0A287AFQ6_PIG_9823 and tr_F1MVT0_F1MVT0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A287AFQ6_A0A287AFQ6_PIG_9823 and tr_A0A2Y9NU60_A0A2Y9NU60_DELLE_9749 are exactly identical! WARNING: Sequences tr_E3LES3_E3LES3_CAERE_31234 and tr_A0A261CP51_A0A261CP51_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A044TF30_A0A044TF30_ONCVO_6282 and tr_A0A182E8R0_A0A182E8R0_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K5KUQ4_A0A2K5KUQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K6D1D5_A0A2K6D1D5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K6AY68_A0A2K6AY68_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K5YK08_A0A2K5YK08_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RV20_A0A0D9RV20_CHLSB_60711 and tr_A0A2K5LFZ4_A0A2K5LFZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A093QDW4_A0A093QDW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A091GA95_A0A091GA95_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EYS4_A0A091EYS4_CORBR_85066 and tr_A0A091FMZ2_A0A091FMZ2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091VHA2_A0A091VHA2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A087REH7_A0A087REH7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093H7J9_A0A093H7J9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091WEI1_A0A091WEI1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A099Z6V4_A0A099Z6V4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A0A0A5B6_A0A0A0A5B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093GHH4_A0A093GHH4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091IYN4_A0A091IYN4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091G702_A0A091G702_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091IFM1_A0A091IFM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093QC01_A0A093QC01_9PASS_328815 and tr_A0A091FLN2_A0A091FLN2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093QC01_A0A093QC01_9PASS_328815 and tr_A0A093GSU3_A0A093GSU3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2I0MNW3_A0A2I0MNW3_COLLI_8932 and tr_A0A1U7SFU8_A0A1U7SFU8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2I0MNW3_A0A2I0MNW3_COLLI_8932 and tr_A0A2Y9DL80_A0A2Y9DL80_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I0MNW3_A0A2I0MNW3_COLLI_8932 and tr_A0A384A0L4_A0A384A0L4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 and tr_A0A0V0WH79_A0A0V0WH79_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 and tr_A0A0V0VI92_A0A0V0VI92_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 and tr_A0A0V1KVJ6_A0A0V1KVJ6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 and tr_A0A0V1NYY3_A0A0V1NYY3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 and tr_A0A0V0TL33_A0A0V0TL33_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1M800_A0A0V1M800_9BILA_268474 and tr_A0A0V1HK28_A0A0V1HK28_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3KIZ3_A0A1S3KIZ3_SALSA_8030 and tr_A0A060Y3C7_A0A060Y3C7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3T560_A0A1S3T560_SALSA_8030 and tr_A0A1S3T6D2_A0A1S3T6D2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A060WEZ9_A0A060WEZ9_ONCMY_8022 and tr_A0A060WPR0_A0A060WPR0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MSD7_A0A226MSD7_CALSU_9009 and tr_A0A226PG57_A0A226PG57_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MVA8_A0A226MVA8_CALSU_9009 and tr_A0A226PGX1_A0A226PGX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2K6X0_A0A2A2K6X0_9BILA_2018661 and tr_A0A2A2LBV6_A0A2A2LBV6_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2U3UZE9_A0A2U3UZE9_TURTR_9739 and tr_A0A2Y9PVK1_A0A2Y9PVK1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3UZH3_A0A2U3UZH3_TURTR_9739 and tr_A0A2Y9NUL6_A0A2Y9NUL6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B9A7_A0A2U4B9A7_TURTR_9739 and tr_A0A2Y9NYZ6_A0A2Y9NYZ6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B9A7_A0A2U4B9A7_TURTR_9739 and tr_A0A2Y9TDF8_A0A2Y9TDF8_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 61 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.reduced.phy Alignment comprises 1 partitions and 376 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 376 Gaps: 49.39 % Invariant sites: 3.19 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/3_mltree/P58012.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 94 / 7520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -180034.029377 [00:00:00 -180034.029377] Initial branch length optimization [00:00:01 -103046.631681] Model parameter optimization (eps = 0.100000) [00:00:40] Tree #1, final logLikelihood: -102728.517166 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.114326,0.041403) (0.101655,0.083096) (0.155381,0.495047) (0.628638,1.447413) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P58012/4_raxmlng_ancestral/P58012.raxml.log Analysis started: 19-Jun-2021 19:47:04 / finished: 19-Jun-2021 19:47:48 Elapsed time: 44.000 seconds