RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:44:26 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/2_msa/P55316_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/3_mltree/P55316.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101066 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/2_msa/P55316_nogap_msa.fasta [00:00:00] Loaded alignment with 997 taxa and 489 sites WARNING: Sequences tr_E1BR13_E1BR13_CHICK_9031 and tr_A0A226N0Z6_A0A226N0Z6_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5J7N5_Q5J7N5_CHICK_9031 and tr_A0A226PTU0_A0A226PTU0_COLVI_9014 are exactly identical! WARNING: Sequences sp_O88470_FOXL2_MOUSE_10090 and tr_D4A0S1_D4A0S1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61572_FOXC1_MOUSE_10090 and tr_A0A1U7QHX8_A0A1U7QHX8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q61850_FOXC2_MOUSE_10090 and sp_Q63246_FOXC2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Z419_M3Z419_MUSPF_9669 and tr_A0A2U3XKB5_A0A2U3XKB5_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P32027_CROC_DROME_7227 and tr_B4IAP9_B4IAP9_DROSE_7238 are exactly identical! WARNING: Sequences tr_G3QG51_G3QG51_GORGO_9595 and tr_A0A2R9AUY3_A0A2R9AUY3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_A0A096NKI7_A0A096NKI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3S6N6_G3S6N6_GORGO_9595 and tr_H2PHB8_H2PHB8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S6N6_G3S6N6_GORGO_9595 and tr_A0A2R8ZMY1_A0A2R8ZMY1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2Q2R9_H2Q2R9_PANTR_9598 and tr_A0A2R9BTX1_A0A2R9BTX1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R9E1_H2R9E1_PANTR_9598 and sp_P55316_FOXG1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R9E1_H2R9E1_PANTR_9598 and tr_F7EAQ3_F7EAQ3_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2R9E1_H2R9E1_PANTR_9598 and tr_A0A096NXE1_A0A096NXE1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2R9E1_H2R9E1_PANTR_9598 and tr_A0A2K5KWV5_A0A2K5KWV5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A3B5Q4W1_A0A3B5Q4W1_XIPMA_8083 and tr_A0A087YQX3_A0A087YQX3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195FHP9_A0A195FHP9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NRJ2_A0A158NRJ2_ATTCE_12957 and tr_F4X2Y0_F4X2Y0_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NRJ2_A0A158NRJ2_ATTCE_12957 and tr_A0A151I1B7_A0A151I1B7_9HYME_520822 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_F7D313_F7D313_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A2R8MRM9_A0A2R8MRM9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A0D9SAX6_A0A0D9SAX6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A2K5L3F0_A0A2K5L3F0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q99958_FOXC2_HUMAN_9606 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5RI96_A0A1D5RI96_MACMU_9544 and tr_A0A2K6D0W0_A0A2K6D0W0_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0VXB8_A0A0V0VXB8_9BILA_181606 are exactly identical! WARNING: Sequences tr_K7EW57_K7EW57_PELSI_13735 and tr_A0A218V7C1_A0A218V7C1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A044TF30_A0A044TF30_ONCVO_6282 and tr_A0A182E8R0_A0A182E8R0_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K6AY68_A0A2K6AY68_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MWV6_A0A2I3MWV6_PAPAN_9555 and tr_A0A2K5YK08_A0A2K5YK08_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RV20_A0A0D9RV20_CHLSB_60711 and tr_A0A2K5LFZ4_A0A2K5LFZ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A093QDW4_A0A093QDW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A091GA95_A0A091GA95_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EYS4_A0A091EYS4_CORBR_85066 and tr_A0A091FMZ2_A0A091FMZ2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A093Q648_A0A093Q648_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A091UYX3_A0A091UYX3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A087QMF0_A0A087QMF0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A093JIX9_A0A093JIX9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A099Z234_A0A099Z234_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A091GVM7_A0A091GVM7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A0A0AP88_A0A0A0AP88_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091FR10_A0A091FR10_CORBR_85066 and tr_A0A093GAQ8_A0A093GAQ8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091VHA2_A0A091VHA2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A087REH7_A0A087REH7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093H7J9_A0A093H7J9_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091WEI1_A0A091WEI1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A099Z6V4_A0A099Z6V4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A0A0A5B6_A0A0A0A5B6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A093GHH4_A0A093GHH4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IK37_A0A091IK37_EGRGA_188379 and tr_A0A091IYN4_A0A091IYN4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2I0MA01_A0A2I0MA01_COLLI_8932 and tr_A0A1V4KV23_A0A1V4KV23_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1CNV6_A0A0V1CNV6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0WH79_A0A0V0WH79_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1KVJ6_A0A0V1KVJ6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V1NYY3_A0A0V1NYY3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S4L5_A0A0V0S4L5_9BILA_6336 and tr_A0A0V0TL33_A0A0V0TL33_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1CZ04_A0A0V1CZ04_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0WXU4_A0A0V0WXU4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1KXM3_A0A0V1KXM3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0ZXJ4_A0A0V0ZXJ4_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1NSS3_A0A0V1NSS3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0U6A9_A0A0V0U6A9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MI36_A0A0V1MI36_9BILA_268474 and tr_A0A0V1HT79_A0A0V1HT79_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3NUD0_A0A1S3NUD0_SALSA_8030 and tr_A0A060XXR6_A0A060XXR6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3T5U4_A0A1S3T5U4_SALSA_8030 and tr_A0A060XBP8_A0A060XBP8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MSD7_A0A226MSD7_CALSU_9009 and tr_A0A226PG57_A0A226PG57_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MVA8_A0A226MVA8_CALSU_9009 and tr_A0A226PGX1_A0A226PGX1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NF98_A0A226NF98_CALSU_9009 and tr_A0A226PUV4_A0A226PUV4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5L3E2_A0A2K5L3E2_CERAT_9531 and tr_A0A2K5XRU4_A0A2K5XRU4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AGD6_A0A2U4AGD6_TURTR_9739 and tr_A0A2Y9LI83_A0A2Y9LI83_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VCP7_A0A2U3VCP7_ODORO_9708 and tr_A0A2U3YL07_A0A2U3YL07_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 73 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.reduced.phy Alignment comprises 1 partitions and 489 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 489 Gaps: 54.92 % Invariant sites: 2.25 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/3_mltree/P55316.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 123 / 9840 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -242350.482650 [00:00:00 -242350.482650] Initial branch length optimization [00:00:02 -132833.173203] Model parameter optimization (eps = 0.100000) [00:00:45] Tree #1, final logLikelihood: -132591.770758 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.123867,0.063853) (0.079559,0.180133) (0.175939,0.690066) (0.620636,1.379796) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P55316/4_raxmlng_ancestral/P55316.raxml.log Analysis started: 12-Jul-2021 17:44:26 / finished: 12-Jul-2021 17:45:18 Elapsed time: 51.333 seconds Consumed energy: 2.388 Wh