RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6258R CPU @ 2.70GHz, 56 cores, 187 GB RAM

RAxML-NG was called at 04-Jun-2021 18:15:49 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/2_msa/P55084_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/2_msa/P55084_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 374 sites

WARNING: Sequences tr_B4QB11_B4QB11_DROSI_7240 and tr_B4I8U9_B4I8U9_DROSE_7238 are exactly identical!
WARNING: Sequences tr_J3KKZ5_J3KKZ5_COCIM_246410 and tr_A0A0J6YS57_A0A0J6YS57_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QMG9_B6QMG9_TALMQ_441960 and tr_A0A093UZT2_A0A093UZT2_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_G3QML6_G3QML6_GORGO_9595 and tr_H2QMA8_H2QMA8_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QML6_G3QML6_GORGO_9595 and sp_P09110_THIK_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_Q292R6_Q292R6_DROPS_46245 and tr_B4GCX3_B4GCX3_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B8NYP6_B8NYP6_ASPFN_332952 and tr_Q2TZ23_Q2TZ23_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NYP6_B8NYP6_ASPFN_332952 and tr_A0A1S9DFU1_A0A1S9DFU1_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179UAY1_A0A179UAY1_BLAGS_559298 and tr_C5GIT7_C5GIT7_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_H2Q4P9_H2Q4P9_PANTR_9598 and sp_P24752_THIL_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2Q4P9_H2Q4P9_PANTR_9598 and tr_A0A2R9B6L3_A0A2R9B6L3_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q5R1W7_ECHB_PANTR_9598 and sp_P55084_ECHB_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F9FJY6_F9FJY6_FUSOF_660025 and tr_A0A0D2XPN3_A0A0D2XPN3_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9FJY6_F9FJY6_FUSOF_660025 and tr_N4U1B1_N4U1B1_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9FJY6_F9FJY6_FUSOF_660025 and tr_X0C154_X0C154_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FJY6_F9FJY6_FUSOF_660025 and tr_A0A2H3TLS2_A0A2H3TLS2_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FJY6_F9FJY6_FUSOF_660025 and tr_A0A2H3HKY2_A0A2H3HKY2_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_E9F9M7_E9F9M7_METRA_655844 and tr_A0A0D9NVY0_A0A0D9NVY0_METAN_1291518 are exactly identical!
WARNING: Sequences tr_C6HG02_C6HG02_AJECH_544712 and tr_F0UMQ8_F0UMQ8_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_A0A158NZ01_A0A158NZ01_ATTCE_12957 and tr_A0A151I4S4_A0A151I4S4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NZL8_A0A158NZL8_ATTCE_12957 and tr_A0A195B650_A0A195B650_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A2R924_A2R924_ASPNC_425011 and tr_G3Y6Z5_G3Y6Z5_ASPNA_380704 are exactly identical!
WARNING: Sequences tr_A2R924_A2R924_ASPNC_425011 and tr_A0A318ZTL9_A0A318ZTL9_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_F6VM61_F6VM61_MACMU_9544 and tr_A0A2K6CYM6_A0A2K6CYM6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6XC62_F6XC62_MACMU_9544 and tr_G7PNQ8_G7PNQ8_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6XC62_F6XC62_MACMU_9544 and tr_A0A2K6CWR8_A0A2K6CWR8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H9FTM7_H9FTM7_MACMU_9544 and tr_A0A096NFA1_A0A096NFA1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H9FTM7_H9FTM7_MACMU_9544 and tr_A0A0D9RPI0_A0A0D9RPI0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H9FTM7_H9FTM7_MACMU_9544 and tr_A0A2K6B4M4_A0A2K6B4M4_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7XQX4_G7XQX4_ASPKW_1033177 and tr_A0A100ILS4_A0A100ILS4_ASPNG_5061 are exactly identical!
WARNING: Sequences tr_G7XQX4_G7XQX4_ASPKW_1033177 and tr_A0A146FTY3_A0A146FTY3_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_G7XQX4_G7XQX4_ASPKW_1033177 and tr_A0A1L9N574_A0A1L9N574_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_F4NXY0_F4NXY0_BATDJ_684364 and tr_F4NXY2_F4NXY2_BATDJ_684364 are exactly identical!
WARNING: Sequences tr_F4NXY0_F4NXY0_BATDJ_684364 and tr_A0A177WMG2_A0A177WMG2_BATDE_403673 are exactly identical!
WARNING: Sequences tr_F4P8H3_F4P8H3_BATDJ_684364 and tr_A0A177WTF7_A0A177WTF7_BATDE_403673 are exactly identical!
WARNING: Sequences tr_E3N068_E3N068_CAERE_31234 and tr_A0A260ZVE4_A0A260ZVE4_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_F2SIK2_F2SIK2_TRIRC_559305 and tr_A0A178F307_A0A178F307_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_S0DW03_S0DW03_GIBF5_1279085 and tr_A0A365NEH3_A0A365NEH3_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_U5HHC8_U5HHC8_USTV1_683840 and tr_A0A2X0NE55_A0A2X0NE55_9BASI_796604 are exactly identical!
WARNING: Sequences tr_W2R7C5_W2R7C5_PHYPN_761204 and tr_A0A0W8D613_A0A0W8D613_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2R7C5_W2R7C5_PHYPN_761204 and tr_W2L5E2_W2L5E2_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A044V384_A0A044V384_ONCVO_6282 and tr_A0A182E3F2_A0A182E3F2_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A096NW84_A0A096NW84_PAPAN_9555 and tr_A0A0D9R8S0_A0A0D9R8S0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A096NW84_A0A096NW84_PAPAN_9555 and tr_A0A2K5XCJ8_A0A2K5XCJ8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A094DUZ4_A0A094DUZ4_9PEZI_1420912 and tr_A0A1B8GAD1_A0A1B8GAD1_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A0F8W419_A0A0F8W419_9EURO_308745 and tr_A0A2T5M5H1_A0A2T5M5H1_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0A1N7C7_A0A0A1N7C7_9FUNG_58291 and tr_A0A367JLP4_A0A367JLP4_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0V0WG79_A0A0V0WG79_9BILA_92179 and tr_A0A0V0VUR9_A0A0V0VUR9_9BILA_181606 are exactly identical!
WARNING: Sequences tr_A0A0V0WG79_A0A0V0WG79_9BILA_92179 and tr_A0A0V1LA86_A0A0V1LA86_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A0V0WG79_A0A0V0WG79_9BILA_92179 and tr_A0A0V1NW77_A0A0V1NW77_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0WG79_A0A0V0WG79_9BILA_92179 and tr_A0A0V0U5Z7_A0A0V0U5Z7_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A164ZRC0_A0A164ZRC0_9HOMO_1314777 and tr_A0A166BW45_A0A166BW45_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S4CHI1_A0A1S4CHI1_TOBAC_4097 and tr_A0A1U7UU15_A0A1U7UU15_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A226N5V7_A0A226N5V7_CALSU_9009 and tr_A0A226NYZ9_A0A226NYZ9_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2K5LDT6_A0A2K5LDT6_CERAT_9531 and tr_A0A2K5XTH3_A0A2K5XTH3_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2V5HMP9_A0A2V5HMP9_9EURO_1450541 and tr_A0A2V5H2A4_A0A2V5H2A4_9EURO_1450538 are exactly identical!
WARNING: Duplicate sequences found: 56

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.reduced.phy

Alignment comprises 1 partitions and 374 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 374 / 374
Gaps: 2.75 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 374 / 29920
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -660589.709310] Initial branch length optimization
[00:00:12 -558714.091105] Model parameter optimization (eps = 10.000000)
[00:02:10 -556564.728515] AUTODETECT spr round 1 (radius: 5)
[00:07:20 -354628.659095] AUTODETECT spr round 2 (radius: 10)
[00:12:55 -256979.635552] AUTODETECT spr round 3 (radius: 15)
[00:18:54 -218967.729593] AUTODETECT spr round 4 (radius: 20)
[00:26:06 -195258.263296] AUTODETECT spr round 5 (radius: 25)
[00:35:59 -181601.950863] SPR radius for FAST iterations: 25 (autodetect)
[00:35:59 -181601.950863] Model parameter optimization (eps = 3.000000)
[00:36:35 -181427.550312] FAST spr round 1 (radius: 25)
[00:42:34 -154536.359049] FAST spr round 2 (radius: 25)
[00:46:37 -151096.978840] FAST spr round 3 (radius: 25)
[00:50:12 -150912.067989] FAST spr round 4 (radius: 25)
[00:53:38 -150898.816016] FAST spr round 5 (radius: 25)
[00:56:46 -150894.385692] FAST spr round 6 (radius: 25)
[00:59:44 -150894.385576] Model parameter optimization (eps = 1.000000)
[01:00:07 -150891.660662] SLOW spr round 1 (radius: 5)
[01:04:54 -150837.666135] SLOW spr round 2 (radius: 5)
[01:09:11 -150835.684764] SLOW spr round 3 (radius: 5)
[01:13:24 -150831.984046] SLOW spr round 4 (radius: 5)
[01:17:27 -150831.916869] SLOW spr round 5 (radius: 10)
[01:21:39 -150830.743049] SLOW spr round 6 (radius: 5)
[01:27:01 -150830.742611] SLOW spr round 7 (radius: 10)
[01:31:44 -150830.742611] SLOW spr round 8 (radius: 15)
[01:37:56 -150830.581849] SLOW spr round 9 (radius: 5)
[01:43:36 -150830.522429] SLOW spr round 10 (radius: 10)
[01:48:23 -150830.522428] SLOW spr round 11 (radius: 15)
[01:52:06] [worker #5] ML tree search #6, logLikelihood: -150804.577464
[01:54:38 -150830.415517] SLOW spr round 12 (radius: 5)
[01:57:26] [worker #3] ML tree search #4, logLikelihood: -150787.318345
[02:00:23 -150830.355482] SLOW spr round 13 (radius: 10)
[02:05:14 -150830.355482] SLOW spr round 14 (radius: 15)
[02:11:32 -150830.355482] SLOW spr round 15 (radius: 20)
[02:13:27] [worker #2] ML tree search #3, logLikelihood: -150809.828134
[02:20:53] [worker #1] ML tree search #2, logLikelihood: -150800.054647
[02:21:10 -150830.355482] SLOW spr round 16 (radius: 25)
[02:32:19 -150830.355482] Model parameter optimization (eps = 0.100000)

[02:32:30] [worker #0] ML tree search #1, logLikelihood: -150830.300702

[02:32:31 -663966.011492] Initial branch length optimization
[02:32:44 -558163.240418] Model parameter optimization (eps = 10.000000)
[02:34:58 -556178.916805] AUTODETECT spr round 1 (radius: 5)
[02:40:15 -353801.439586] AUTODETECT spr round 2 (radius: 10)
[02:45:39 -266930.186743] AUTODETECT spr round 3 (radius: 15)
[02:51:30 -209776.109040] AUTODETECT spr round 4 (radius: 20)
[02:58:52 -186975.047764] AUTODETECT spr round 5 (radius: 25)
[03:07:09 -177463.201570] SPR radius for FAST iterations: 25 (autodetect)
[03:07:09 -177463.201570] Model parameter optimization (eps = 3.000000)
[03:07:38 -177317.651916] FAST spr round 1 (radius: 25)
[03:13:14 -152033.922823] FAST spr round 2 (radius: 25)
[03:17:20 -150910.042245] FAST spr round 3 (radius: 25)
[03:17:39] [worker #4] ML tree search #5, logLikelihood: -150804.476815
[03:21:01 -150850.508886] FAST spr round 4 (radius: 25)
[03:24:08 -150844.270178] FAST spr round 5 (radius: 25)
[03:27:08 -150844.270159] Model parameter optimization (eps = 1.000000)
[03:27:28 -150839.492941] SLOW spr round 1 (radius: 5)
[03:32:07 -150817.271463] SLOW spr round 2 (radius: 5)
[03:36:18 -150811.984862] SLOW spr round 3 (radius: 5)
[03:40:26 -150811.403401] SLOW spr round 4 (radius: 5)
[03:44:31 -150811.403401] SLOW spr round 5 (radius: 10)
[03:48:49 -150808.639541] SLOW spr round 6 (radius: 5)
[03:51:51] [worker #5] ML tree search #12, logLikelihood: -150818.221570
[03:54:22 -150806.619472] SLOW spr round 7 (radius: 5)
[03:59:03 -150806.619378] SLOW spr round 8 (radius: 10)
[04:03:02] [worker #2] ML tree search #9, logLikelihood: -150792.474377
[04:03:22 -150806.619337] SLOW spr round 9 (radius: 15)
[04:10:12 -150806.514133] SLOW spr round 10 (radius: 5)
[04:15:46 -150806.452403] SLOW spr round 11 (radius: 10)
[04:20:30 -150806.452402] SLOW spr round 12 (radius: 15)
[04:26:43 -150806.452402] SLOW spr round 13 (radius: 20)
[04:36:45] [worker #1] ML tree search #8, logLikelihood: -150818.480663
[04:37:08 -150806.452402] SLOW spr round 14 (radius: 25)
[04:49:19] [worker #3] ML tree search #10, logLikelihood: -150796.083919
[04:49:39 -150806.452402] Model parameter optimization (eps = 0.100000)

[04:49:54] [worker #0] ML tree search #7, logLikelihood: -150806.369129

[04:49:55 -664153.121394] Initial branch length optimization
[04:50:04 -561141.946735] Model parameter optimization (eps = 10.000000)
[04:52:22 -558965.947425] AUTODETECT spr round 1 (radius: 5)
[04:57:26 -353860.886318] AUTODETECT spr round 2 (radius: 10)
[05:02:35 -257676.346518] AUTODETECT spr round 3 (radius: 15)
[05:06:49] [worker #4] ML tree search #11, logLikelihood: -150792.539890
[05:08:30 -207936.264683] AUTODETECT spr round 4 (radius: 20)
[05:15:19 -181923.046281] AUTODETECT spr round 5 (radius: 25)
[05:23:07 -178750.636348] SPR radius for FAST iterations: 25 (autodetect)
[05:23:07 -178750.636348] Model parameter optimization (eps = 3.000000)
[05:23:49 -178565.372764] FAST spr round 1 (radius: 25)
[05:29:20 -152063.311967] FAST spr round 2 (radius: 25)
[05:33:02 -151009.550584] FAST spr round 3 (radius: 25)
[05:36:27 -150899.603815] FAST spr round 4 (radius: 25)
[05:39:32 -150885.552472] FAST spr round 5 (radius: 25)
[05:42:34 -150876.147564] FAST spr round 6 (radius: 25)
[05:45:25 -150876.147468] Model parameter optimization (eps = 1.000000)
[05:45:51 -150875.069464] SLOW spr round 1 (radius: 5)
[05:50:14 -150839.767316] SLOW spr round 2 (radius: 5)
[05:54:29 -150828.999018] SLOW spr round 3 (radius: 5)
[05:58:26 -150828.998934] SLOW spr round 4 (radius: 10)
[06:02:29] [worker #5] ML tree search #18, logLikelihood: -150820.133185
[06:02:44 -150827.745796] SLOW spr round 5 (radius: 5)
[06:08:02 -150822.379368] SLOW spr round 6 (radius: 5)
[06:12:36 -150822.379360] SLOW spr round 7 (radius: 10)
[06:16:52 -150822.379360] SLOW spr round 8 (radius: 15)
[06:23:46 -150817.400391] SLOW spr round 9 (radius: 5)
[06:26:14] [worker #2] ML tree search #15, logLikelihood: -150808.645126
[06:29:29 -150806.671231] SLOW spr round 10 (radius: 5)
[06:34:17 -150806.671227] SLOW spr round 11 (radius: 10)
[06:38:40 -150806.301028] SLOW spr round 12 (radius: 5)
[06:42:49] [worker #3] ML tree search #16, logLikelihood: -150809.439263
[06:43:56 -150805.598321] SLOW spr round 13 (radius: 5)
[06:48:29 -150805.598321] SLOW spr round 14 (radius: 10)
[06:52:46 -150805.598321] SLOW spr round 15 (radius: 15)
[06:54:15] [worker #1] ML tree search #14, logLikelihood: -150790.223740
[06:59:52 -150805.598321] SLOW spr round 16 (radius: 20)
[07:10:18 -150805.598321] SLOW spr round 17 (radius: 25)
[07:21:29] [worker #4] ML tree search #17, logLikelihood: -150813.852396
[07:22:48 -150805.598321] Model parameter optimization (eps = 0.100000)

[07:23:06] [worker #0] ML tree search #13, logLikelihood: -150805.265283

[07:23:07 -659015.171345] Initial branch length optimization
[07:23:17 -554568.846470] Model parameter optimization (eps = 10.000000)
[07:25:07 -552432.008271] AUTODETECT spr round 1 (radius: 5)
[07:30:03 -342512.920014] AUTODETECT spr round 2 (radius: 10)
[07:35:04 -246665.998629] AUTODETECT spr round 3 (radius: 15)
[07:40:28 -202623.464558] AUTODETECT spr round 4 (radius: 20)
[07:46:52 -180522.148537] AUTODETECT spr round 5 (radius: 25)
[07:54:15 -176232.692031] SPR radius for FAST iterations: 25 (autodetect)
[07:54:15 -176232.692031] Model parameter optimization (eps = 3.000000)
[07:54:48 -176080.916150] FAST spr round 1 (radius: 25)
[08:00:00 -152195.463970] FAST spr round 2 (radius: 25)
[08:03:57 -151011.906336] FAST spr round 3 (radius: 25)
[08:07:13 -150904.834815] FAST spr round 4 (radius: 25)
[08:10:09 -150895.257452] FAST spr round 5 (radius: 25)
[08:12:57 -150888.412555] FAST spr round 6 (radius: 25)
[08:15:40 -150888.412487] Model parameter optimization (eps = 1.000000)
[08:16:08 -150885.993097] SLOW spr round 1 (radius: 5)
[08:20:22 -150837.101412] SLOW spr round 2 (radius: 5)
[08:24:23 -150831.015833] SLOW spr round 3 (radius: 5)
[08:28:15 -150831.015760] SLOW spr round 4 (radius: 10)
[08:32:11 -150830.491602] SLOW spr round 5 (radius: 5)
[08:37:12 -150830.491256] SLOW spr round 6 (radius: 10)
[08:41:29 -150830.178632] SLOW spr round 7 (radius: 5)
[08:46:23 -150826.865599] SLOW spr round 8 (radius: 5)
[08:48:45] [worker #1] ML tree search #20, logLikelihood: -150788.634251
[08:50:37 -150826.865599] SLOW spr round 9 (radius: 10)
[08:54:36 -150825.387301] SLOW spr round 10 (radius: 5)
[08:59:36 -150824.335483] SLOW spr round 11 (radius: 5)
[09:03:51 -150824.335391] SLOW spr round 12 (radius: 10)
[09:07:46 -150822.768019] SLOW spr round 13 (radius: 5)
[09:12:40 -150822.768014] SLOW spr round 14 (radius: 10)
[09:16:52 -150822.768014] SLOW spr round 15 (radius: 15)
[09:22:59 -150822.768014] SLOW spr round 16 (radius: 20)
[09:32:51 -150822.768014] SLOW spr round 17 (radius: 25)
[09:44:23 -150822.768014] Model parameter optimization (eps = 0.100000)

[09:44:35] [worker #0] ML tree search #19, logLikelihood: -150822.713402


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.235784,0.434901) (0.315626,0.550632) (0.280134,1.203259) (0.168456,2.294902) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -150787.318345

AIC score: 305584.636690 / AICc score: 8349644.636690 / BIC score: 313452.769564
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=374).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P55084/3_mltree/P55084.raxml.log

Analysis started: 04-Jun-2021 18:15:49 / finished: 05-Jun-2021 04:00:24

Elapsed time: 35075.207 seconds

Consumed energy: 3894.751 Wh (= 19 km in an electric car, or 97 km with an e-scooter!)