RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:46:21 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/2_msa/P55072_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/3_mltree/P55072.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622634381 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/2_msa/P55072_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 806 sites WARNING: Sequences tr_B4QHU8_B4QHU8_DROSI_7240 and tr_B4HMA9_B4HMA9_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_G3QL07_G3QL07_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_H2PRU6_H2PRU6_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_G1SR03_G1SR03_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_H2QX75_H2QX75_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A286Y676_A0A286Y676_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and sp_P55072_TERA_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_H9EPW4_H9EPW4_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_U3EUB9_U3EUB9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A096P194_A0A096P194_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A0D9RD03_A0A0D9RD03_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A1S3FZV0_A0A1S3FZV0_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A1U7T906_A0A1U7T906_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A1U7QTL0_A0A1U7QTL0_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A2K5L631_A0A2K5L631_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A2K5Z6F8_A0A2K5Z6F8_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A2R9C1U9_A0A2R9C1U9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q01853_TERA_MOUSE_10090 and tr_A0A2Y9DD09_A0A2Y9DD09_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_E2RLQ9_E2RLQ9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_G3X757_G3X757_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_M3VW05_M3VW05_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_A0A2U3VCJ1_A0A2U3VCJ1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_A0A2U3Y673_A0A2U3Y673_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XZQ1_M3XZQ1_MUSPF_9669 and tr_A0A2Y9JE35_A0A2Y9JE35_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E3RT91_E3RT91_PYRTT_861557 and tr_A0A2W1DJE8_A0A2W1DJE8_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A0E1RV78_A0A0E1RV78_COCIM_246410 and tr_E9D1A7_E9D1A7_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1RV78_A0A0E1RV78_COCIM_246410 and tr_A0A0J7BFS1_A0A0J7BFS1_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q6M1_B6Q6M1_TALMQ_441960 and tr_A0A093VMT9_A0A093VMT9_TALMA_1077442 are exactly identical! WARNING: Sequences tr_U9W4Q2_U9W4Q2_NEUCR_367110 and tr_G4URM7_G4URM7_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8NQU3_B8NQU3_ASPFN_332952 and tr_Q2UB52_Q2UB52_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NQU3_B8NQU3_ASPFN_332952 and tr_A0A1S9DSN3_A0A1S9DSN3_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179V0U9_A0A179V0U9_BLAGS_559298 and tr_C5GKY1_C5GKY1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_W5PRJ4_W5PRJ4_SHEEP_9940 and tr_G1MAF6_G1MAF6_AILME_9646 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_A0A0D2XZD6_A0A0D2XZD6_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_S0EFW4_S0EFW4_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_N4UPF8_N4UPF8_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_X0CLK6_X0CLK6_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_A0A2H3TTU2_A0A2H3TTU2_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_A0A2H3GJN3_A0A2H3GJN3_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_A0A2K0WHU1_A0A2K0WHU1_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9G3S2_F9G3S2_FUSOF_660025 and tr_A0A365MX13_A0A365MX13_GIBIN_948311 are exactly identical! WARNING: Sequences tr_A0A158P375_A0A158P375_ATTCE_12957 and tr_A0A195BHF3_A0A195BHF3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0ISK6_A0A0E0ISK6_ORYNI_4536 and tr_I1Q5Z6_I1Q5Z6_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0ISK6_A0A0E0ISK6_ORYNI_4536 and tr_I1QUY1_I1QUY1_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0ISK6_A0A0E0ISK6_ORYNI_4536 and tr_A0A0E0QZN4_A0A0E0QZN4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0ISK6_A0A0E0ISK6_ORYNI_4536 and tr_A0A0D3HE46_A0A0D3HE46_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0ISK6_A0A0E0ISK6_ORYNI_4536 and tr_A0A0E0BB06_A0A0E0BB06_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0J9XXY9_A0A0J9XXY9_BRUMA_6279 and tr_A0A0N4TX93_A0A0N4TX93_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A2QK32_A2QK32_ASPNC_425011 and tr_G3YAG9_G3YAG9_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QK32_A2QK32_ASPNC_425011 and tr_A0A319A2A9_A0A319A2A9_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XVQ6_G7XVQ6_ASPKW_1033177 and tr_A0A1L9U660_A0A1L9U660_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2XCL6_A2XCL6_ORYSI_39946 and tr_I1P7N1_I1P7N1_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2XCL6_A2XCL6_ORYSI_39946 and tr_A0A0E0CVA5_A0A0E0CVA5_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A2XCL6_A2XCL6_ORYSI_39946 and tr_A0A0D3FDX3_A0A0D3FDX3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2XCL6_A2XCL6_ORYSI_39946 and tr_A0A0D9Z263_A0A0D9Z263_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2XCL6_A2XCL6_ORYSI_39946 and tr_Q10RP0_Q10RP0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4PC08_F4PC08_BATDJ_684364 and tr_A0A177WX96_A0A177WX96_BATDE_403673 are exactly identical! WARNING: Sequences tr_F4W4F4_F4W4F4_ACREC_103372 and tr_A0A195DN43_A0A195DN43_9HYME_471704 are exactly identical! WARNING: Sequences tr_F4W4F4_F4W4F4_ACREC_103372 and tr_A0A195EZP1_A0A195EZP1_9HYME_34720 are exactly identical! WARNING: Sequences tr_E6RCE3_E6RCE3_CRYGW_367775 and tr_A0A095CHJ5_A0A095CHJ5_CRYGR_294750 are exactly identical! WARNING: Sequences tr_F9X4C5_F9X4C5_ZYMTI_336722 and tr_A0A0F4GLP0_A0A0F4GLP0_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9X4C5_F9X4C5_ZYMTI_336722 and tr_A0A1X7RJB3_A0A1X7RJB3_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A8WN57_A8WN57_CAEBR_6238 and tr_A0A2G5UY78_A0A2G5UY78_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F2SS16_F2SS16_TRIRC_559305 and tr_F2PQZ5_F2PQZ5_TRIEC_559882 are exactly identical! WARNING: Sequences tr_F2SS16_F2SS16_TRIRC_559305 and tr_A0A059JBL1_A0A059JBL1_9EURO_1215338 are exactly identical! WARNING: Sequences tr_F2SS16_F2SS16_TRIRC_559305 and tr_A0A178EXT0_A0A178EXT0_TRIRU_5551 are exactly identical! WARNING: Sequences tr_M7ZG23_M7ZG23_TRIUA_4572 and tr_A0A3B6HMU5_A0A3B6HMU5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M2T803_M2T803_COCSN_665912 and tr_M2U1I8_M2U1I8_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2T803_M2T803_COCSN_665912 and tr_W6YIM7_W6YIM7_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2T803_M2T803_COCSN_665912 and tr_W7A1K6_W7A1K6_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2WTA6_V2WTA6_MONRO_1381753 and tr_A0A0W0FS88_A0A0W0FS88_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QZZ8_W2QZZ8_PHYPN_761204 and tr_A0A0W8C8X4_A0A0W8C8X4_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QZZ8_W2QZZ8_PHYPN_761204 and tr_W2I822_W2I822_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6IUF1_A0A3B6IUF1_WHEAT_4565 and tr_A0A3B6JNP8_A0A3B6JNP8_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A010RB28_A0A010RB28_9PEZI_1445577 and tr_A0A1G4B3T7_A0A1G4B3T7_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A015LTP1_A0A015LTP1_9GLOM_1432141 and tr_A0A2I1DUR2_A0A2I1DUR2_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A078FLX9_A0A078FLX9_BRANA_3708 and tr_A0A0D3CTJ9_A0A0D3CTJ9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078HV46_A0A078HV46_BRANA_3708 and tr_A0A0D3CLL4_A0A0D3CLL4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094EQ43_A0A094EQ43_9PEZI_1420912 and tr_A0A1B8GVT3_A0A1B8GVT3_9PEZI_342668 are exactly identical! WARNING: Sequences tr_V4SRW7_V4SRW7_9ROSI_85681 and tr_A0A2H5PWU3_A0A2H5PWU3_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0K0FKR9_A0A0K0FKR9_STRVS_75913 and tr_A0A0N5B656_A0A0N5B656_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0G4P3F4_A0A0G4P3F4_PENCA_1429867 and tr_A0A1V6RA12_A0A1V6RA12_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0V1D9D9_A0A0V1D9D9_TRIBR_45882 and tr_A0A0V0VA92_A0A0V0VA92_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D9D9_A0A0V1D9D9_TRIBR_45882 and tr_A0A0V1PB66_A0A0V1PB66_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0P1BPZ6_A0A0P1BPZ6_9BASI_401625 and tr_A0A316W3V3_A0A316W3V3_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A124BW77_A0A124BW77_ASPNG_5061 and tr_A0A1L9MUX0_A0A1L9MUX0_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A124BW77_A0A124BW77_ASPNG_5061 and tr_A0A317V984_A0A317V984_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A0A164VV54_A0A164VV54_9HOMO_1314777 and tr_A0A166HX36_A0A166HX36_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194VKV2_A0A194VKV2_9PEZI_105487 and tr_A0A194VDC7_A0A194VDC7_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1S3WXP8_A0A1S3WXP8_TOBAC_4097 and tr_A0A1U7X6D0_A0A1U7X6D0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3XUB0_A0A1S3XUB0_TOBAC_4097 and tr_A0A1U7VG59_A0A1U7VG59_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3PEV6_A0A1S3PEV6_SALSA_8030 and tr_A0A060WC37_A0A060WC37_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B7MWX8_A0A1B7MWX8_9HOMO_1314800 and tr_A0A1J8QJL0_A0A1J8QJL0_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1I7UG08_A0A1I7UG08_9PELO_1561998 and tr_A0A1I7UG09_A0A1I7UG09_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1L9WMT4_A0A1L9WMT4_ASPAC_690307 and tr_A0A319E458_A0A319E458_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WMT4_A0A1L9WMT4_ASPAC_690307 and tr_A0A2V5IIP3_A0A2V5IIP3_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WMT4_A0A1L9WMT4_ASPAC_690307 and tr_A0A2V5HMQ6_A0A2V5HMQ6_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1R3RVB8_A0A1R3RVB8_ASPC5_602072 and tr_A0A317V3E4_A0A317V3E4_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A226N8H6_A0A226N8H6_CALSU_9009 and tr_A0A226PIJ6_A0A226PIJ6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3BJI6_A0A2H3BJI6_9AGAR_1076256 and tr_A0A284RYC5_A0A284RYC5_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A1U8EVJ0_A0A1U8EVJ0_CAPAN_4072 and tr_A0A2G3BBU8_A0A2G3BBU8_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8H311_A0A1U8H311_CAPAN_4072 and tr_A0A2G3CAW7_A0A2G3CAW7_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U4CGD5_A0A2U4CGD5_TURTR_9739 and tr_A0A2Y9QLH1_A0A2Y9QLH1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CGD5_A0A2U4CGD5_TURTR_9739 and tr_A0A2Y9EZQ3_A0A2Y9EZQ3_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 104 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.reduced.phy Alignment comprises 1 partitions and 806 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 806 Gaps: 2.03 % Invariant sites: 13.15 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/3_mltree/P55072.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 202 / 16160 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -123250.711773 [00:00:00 -123250.711773] Initial branch length optimization [00:00:02 -116435.180911] Model parameter optimization (eps = 0.100000) [00:00:50] Tree #1, final logLikelihood: -115783.759285 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.360238,0.274975) (0.381119,0.526855) (0.153587,1.284355) (0.105056,4.786879) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P55072/4_raxmlng_ancestral/P55072.raxml.log Analysis started: 02-Jun-2021 14:46:21 / finished: 02-Jun-2021 14:47:19 Elapsed time: 57.576 seconds