RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 23-Jun-2021 00:30:03 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/2_msa/P52952_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/3_mltree/P52952.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1624397403 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/2_msa/P52952_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 324 sites WARNING: Sequences tr_A0A1D5PPK4_A0A1D5PPK4_CHICK_9031 and tr_A0A226MTF5_A0A226MTF5_CALSU_9009 are exactly identical! WARNING: Sequences tr_M3XN20_M3XN20_MUSPF_9669 and tr_A0A2I2USB6_A0A2I2USB6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XN20_M3XN20_MUSPF_9669 and tr_A0A2Y9JUD1_A0A2Y9JUD1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_E2RNP4_E2RNP4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_F7A4A4_F7A4A4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_H0XNG0_H0XNG0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_M3WA54_M3WA54_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_A0A2U3WVZ5_A0A2U3WVZ5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_A0A2U3XNW3_A0A2U3XNW3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XQ34_M3XQ34_MUSPF_9669 and tr_A0A2Y9ISZ8_A0A2Y9ISZ8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMQ6_M3YMQ6_MUSPF_9669 and tr_A0A2Y9ITU2_A0A2Y9ITU2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YXU9_M3YXU9_MUSPF_9669 and sp_P43698_TITF1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YXU9_M3YXU9_MUSPF_9669 and tr_A0A2Y9IIW5_A0A2Y9IIW5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_H2NL18_H2NL18_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_A0A2I3S7F0_A0A2I3S7F0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and sp_P23441_NKX21_RAT_10116 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_A0A2I3LKG7_A0A2I3LKG7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_A0A0D9RSH0_A0A0D9RSH0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_A0A3Q0D8F1_A0A3Q0D8F1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1QUX4_G1QUX4_NOMLE_61853 and tr_A0A2K6DWL3_A0A2K6DWL3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RG94_G1RG94_NOMLE_61853 and tr_G3S4L1_G3S4L1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RG94_G1RG94_NOMLE_61853 and tr_F6VYJ7_F6VYJ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_H2QK20_H2QK20_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and sp_O95096_NKX22_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_F7I8G9_F7I8G9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_G7PH38_G7PH38_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_A0A096NVR7_A0A096NVR7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_A0A0D9RF98_A0A0D9RF98_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_A0A2K5NK46_A0A2K5NK46_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_A0A2K5XKB5_A0A2K5XKB5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QYG3_G3QYG3_GORGO_9595 and tr_A0A2R9C0M7_A0A2R9C0M7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R7M9_G3R7M9_GORGO_9595 and tr_H2Q871_H2Q871_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PCX8_H2PCX8_PONAB_9601 and tr_K7A5T9_K7A5T9_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q29I54_Q29I54_DROPS_46245 and tr_B4HAA5_B4HAA5_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QK19_H2QK19_PANTR_9598 and sp_Q9H2Z4_NKX24_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F7BSL0_F7BSL0_MONDO_13616 and tr_G3W4C2_G3W4C2_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5PTF6_A0A3B5PTF6_XIPMA_8083 and tr_A0A087XB99_A0A087XB99_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NB13_A0A158NB13_ATTCE_12957 and tr_A0A151I7Z2_A0A151I7Z2_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NGA4_A0A158NGA4_ATTCE_12957 and tr_A0A195B928_A0A195B928_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NKN6_A0A158NKN6_ATTCE_12957 and tr_A0A195BNG0_A0A195BNG0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NKN6_A0A158NKN6_ATTCE_12957 and tr_A0A195CKW2_A0A195CKW2_9HYME_456900 are exactly identical! WARNING: Sequences tr_I3JN05_I3JN05_ORENI_8128 and tr_G3NV97_G3NV97_GASAC_69293 are exactly identical! WARNING: Sequences sp_P52952_NKX25_HUMAN_9606 and tr_A0A2R9AEW5_A0A2R9AEW5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7HNC4_F7HNC4_MACMU_9544 and tr_A0A2K6BIL0_A0A2K6BIL0_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZP44_H0ZP44_TAEGU_59729 and tr_U3JUF7_U3JUF7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZP44_H0ZP44_TAEGU_59729 and tr_A0A218VEJ5_A0A218VEJ5_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A091F0N7_A0A091F0N7_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A093Q624_A0A093Q624_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A091UZS3_A0A091UZS3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A093HC37_A0A093HC37_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A2I0MPG3_A0A2I0MPG3_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A093GCY0_A0A093GCY0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_U3IZE9_U3IZE9_ANAPL_8839 and tr_A0A1V4KFG9_A0A1V4KFG9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A087XE08_A0A087XE08_POEFO_48698 and tr_A0A087XWZ3_A0A087XWZ3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A096NB22_A0A096NB22_PAPAN_9555 and tr_A0A2K5LPC1_A0A2K5LPC1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NB22_A0A096NB22_PAPAN_9555 and tr_A0A2K6AWK9_A0A2K6AWK9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NVR6_A0A096NVR6_PAPAN_9555 and tr_A0A2K5L481_A0A2K5L481_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NVR6_A0A096NVR6_PAPAN_9555 and tr_A0A2K6B7S6_A0A2K6B7S6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NZF4_A0A096NZF4_PAPAN_9555 and tr_A0A2K5NP28_A0A2K5NP28_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NZF4_A0A096NZF4_PAPAN_9555 and tr_A0A2K6CWC7_A0A2K6CWC7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MPT1_A0A2I3MPT1_PAPAN_9555 and tr_A0A2K5MUH9_A0A2K5MUH9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MPT1_A0A2I3MPT1_PAPAN_9555 and tr_A0A2K6C3I4_A0A2K6C3I4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RSG7_A0A0D9RSG7_CHLSB_60711 and tr_A0A2K5P0Q0_A0A2K5P0Q0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RSG7_A0A0D9RSG7_CHLSB_60711 and tr_A0A2K5Y1A6_A0A2K5Y1A6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151P5X8_A0A151P5X8_ALLMI_8496 and tr_A0A3Q0H2J2_A0A3Q0H2J2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0V0RK29_A0A0V0RK29_9BILA_6336 and tr_A0A0V1KYA8_A0A0V1KYA8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RK29_A0A0V0RK29_9BILA_6336 and tr_A0A0V0TZY2_A0A0V0TZY2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0RRC3_A0A0V0RRC3_9BILA_6336 and tr_A0A0V1NI96_A0A0V1NI96_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CWJ6_A0A0V1CWJ6_TRIBR_45882 and tr_A0A0V1PGQ0_A0A0V1PGQ0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DA56_A0A0V1DA56_TRIBR_45882 and tr_A0A0V0VG49_A0A0V0VG49_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DA56_A0A0V1DA56_TRIBR_45882 and tr_A0A0V1P9B7_A0A0V1P9B7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1S3SNE9_A0A1S3SNE9_SALSA_8030 and tr_A0A060Y5Y7_A0A060Y5Y7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0QJR0_A0A2D0QJR0_ICTPU_7998 and tr_A0A2D0QKA1_A0A2D0QKA1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V203_A0A2U3V203_TURTR_9739 and tr_A0A384ATC0_A0A384ATC0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4AG36_A0A2U4AG36_TURTR_9739 and tr_A0A2Y9NB78_A0A2Y9NB78_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9MPI4_A0A2Y9MPI4_DELLE_9749 and tr_A0A2Y9S933_A0A2Y9S933_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PWP6_A0A2Y9PWP6_DELLE_9749 and tr_A0A2Y9FHD6_A0A2Y9FHD6_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 77 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.reduced.phy Alignment comprises 1 partitions and 324 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 324 Gaps: 37.58 % Invariant sites: 0.62 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/3_mltree/P52952.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 81 / 6480 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -298593.946618 [00:00:00 -298593.946618] Initial branch length optimization [00:00:01 -141510.224030] Model parameter optimization (eps = 0.100000) [00:00:31] Tree #1, final logLikelihood: -141350.196413 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.120331,0.056166) (0.105100,0.145959) (0.261329,0.606172) (0.513240,1.596699) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P52952/4_raxmlng_ancestral/P52952.raxml.log Analysis started: 23-Jun-2021 00:30:03 / finished: 23-Jun-2021 00:30:37 Elapsed time: 34.511 seconds Consumed energy: 2.099 Wh