RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 15:16:19 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/2_msa/P51812_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/3_mltree/P51812.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622636178 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/2_msa/P51812_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 740 sites WARNING: Sequences tr_A0A2R8RTH3_A0A2R8RTH3_DANRE_7955 and tr_E9QG10_E9QG10_DANRE_7955 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_I3MFL8_I3MFL8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A287A3K5_A0A287A3K5_PIG_9823 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2I2U9Z1_A0A2I2U9Z1_FELCA_9685 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A1U7QTC0_A0A1U7QTC0_MESAU_10036 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2U4AQK9_A0A2U4AQK9_TURTR_9739 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2U4AQM1_A0A2U4AQM1_TURTR_9739 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2U3W113_A0A2U3W113_ODORO_9708 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2U3YDK5_A0A2U3YDK5_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2Y9JRH9_A0A2Y9JRH9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2Y9M3B9_A0A2Y9M3B9_DELLE_9749 are exactly identical! WARNING: Sequences sp_P18654_KS6A3_MOUSE_10090 and tr_A0A2Y9EK14_A0A2Y9EK14_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_E2RMD8_E2RMD8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_D2HLU3_D2HLU3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_M3X5V6_M3X5V6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_A0A2U3VRH2_A0A2U3VRH2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_A0A2Y9K1P2_A0A2Y9K1P2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YUR1_M3YUR1_MUSPF_9669 and tr_A0A384CGY7_A0A384CGY7_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q94533_Q94533_DROME_7227 and tr_B4HUJ3_B4HUJ3_DROSE_7238 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_G1P0P8_G1P0P8_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_H2NV94_H2NV94_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_H2QDK7_H2QDK7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and sp_P23443_KS6B1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_H9ENT4_H9ENT4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_G3TCW7_G3TCW7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_F7GCV0_F7GCV0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_A0A2I3LXQ2_A0A2I3LXQ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_A0A0D9R0Q9_A0A0D9R0Q9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_A0A1U7U9T8_A0A1U7U9T8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_A0A2K6EAG2_A0A2K6EAG2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QIR2_G1QIR2_NOMLE_61853 and tr_A0A2K5XVI9_A0A2K5XVI9_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RDR9_G1RDR9_NOMLE_61853 and tr_G3QKB5_G3QKB5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RDR9_G1RDR9_NOMLE_61853 and tr_A0A2I3TPM9_A0A2I3TPM9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3H5L5_G3H5L5_CRIGR_10029 and tr_E2RP04_E2RP04_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3H5L5_G3H5L5_CRIGR_10029 and tr_W5Q1L5_W5Q1L5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G3H5L5_G3H5L5_CRIGR_10029 and tr_A0A2U4AQL4_A0A2U4AQL4_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3QNQ7_G3QNQ7_GORGO_9595 and tr_K7DH81_K7DH81_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QNQ7_G3QNQ7_GORGO_9595 and sp_O75582_KS6A5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QNQ7_G3QNQ7_GORGO_9595 and tr_A0A2R9BP98_A0A2R9BP98_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and tr_H2PV35_H2PV35_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and tr_K7DQL9_K7DQL9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and sp_P51812_KS6A3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and tr_U3D5H3_U3D5H3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and tr_A0A0D9RPY4_A0A0D9RPY4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R0F8_G3R0F8_GORGO_9595 and tr_A0A2R9AC85_A0A2R9AC85_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A091JJT0_A0A091JJT0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A091UMD8_A0A091UMD8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A087R029_A0A087R029_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A091VQM3_A0A091VQM3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A091GEY9_A0A091GEY9_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A0A0AEE6_A0A0A0AEE6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1N6A7_G1N6A7_MELGA_9103 and tr_A0A091HTV2_A0A091HTV2_CALAN_9244 are exactly identical! WARNING: Sequences sp_P67998_KS6B1_RABIT_9986 and sp_P67999_KS6B1_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A2I3S8A4_A0A2I3S8A4_PANTR_9598 and tr_A0A2R8ZB76_A0A2R8ZB76_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A088A647_A0A088A647_APIME_7460 and tr_A0A2A3EKH5_A0A2A3EKH5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A1D5QL06_A0A1D5QL06_MACMU_9544 and tr_A0A2K6BBJ1_A0A2K6BBJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H7W3_F7H7W3_MACMU_9544 and tr_A0A2K6DY54_A0A2K6DY54_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZBF2_H0ZBF2_TAEGU_59729 and tr_A0A218UU76_A0A218UU76_9PASE_299123 are exactly identical! WARNING: Sequences tr_A8X620_A8X620_CAEBR_6238 and tr_A0A2G5VG23_A0A2G5VG23_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F1MNP4_F1MNP4_BOVIN_9913 and sp_Q6TJY3_KS6B1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3KCS8_U3KCS8_FICAL_59894 and tr_A0A093PWE2_A0A093PWE2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A044V0L6_A0A044V0L6_ONCVO_6282 and tr_A0A182E032_A0A182E032_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096N856_A0A096N856_PAPAN_9555 and tr_A0A0D9RDU5_A0A0D9RDU5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NRH4_A0A096NRH4_PAPAN_9555 and tr_A0A2K5MZ94_A0A2K5MZ94_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NRH4_A0A096NRH4_PAPAN_9555 and tr_A0A2K6CZQ3_A0A2K6CZQ3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151M2M6_A0A151M2M6_ALLMI_8496 and tr_A0A3Q0HK21_A0A3Q0HK21_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MU73_A0A151MU73_ALLMI_8496 and tr_A0A1U7SM06_A0A1U7SM06_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JHT1_A0A091JHT1_EGRGA_188379 and tr_A0A087R517_A0A087R517_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A087QXG3_A0A087QXG3_APTFO_9233 and tr_A0A091GB68_A0A091GB68_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093HL38_A0A093HL38_STRCA_441894 and tr_A0A099ZPR0_A0A099ZPR0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A2I0LYH4_A0A2I0LYH4_COLLI_8932 and tr_A0A093FYE4_A0A093FYE4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V1CS38_A0A0V1CS38_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V0W984_A0A0V0W984_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V0UMU8_A0A0V0UMU8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V1KTZ6_A0A0V1KTZ6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V0ZEM5_A0A0V0ZEM5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V1NN95_A0A0V1NN95_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RUR0_A0A0V0RUR0_9BILA_6336 and tr_A0A0V0TB57_A0A0V0TB57_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1M7D9_A0A0V1M7D9_9BILA_268474 and tr_A0A0V1HT60_A0A0V1HT60_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A2K5LWD1_A0A2K5LWD1_CERAT_9531 and tr_A0A2K6AEC4_A0A2K6AEC4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4A0U2_A0A2U4A0U2_TURTR_9739 and tr_A0A2Y9NCX8_A0A2Y9NCX8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQL1_A0A2U4AQL1_TURTR_9739 and tr_A0A2U4AQL8_A0A2U4AQL8_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4C5Z8_A0A2U4C5Z8_TURTR_9739 and tr_A0A2Y9LI66_A0A2Y9LI66_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C5Z8_A0A2U4C5Z8_TURTR_9739 and tr_A0A2Y9FC81_A0A2Y9FC81_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 84 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.reduced.phy Alignment comprises 1 partitions and 740 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 740 Gaps: 17.88 % Invariant sites: 0.14 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/3_mltree/P51812.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 185 / 14800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -183040.120765 [00:00:00 -183040.120765] Initial branch length optimization [00:00:01 -169790.887302] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -168924.631171 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.252334,0.404000) (0.216760,0.489098) (0.297881,0.850981) (0.233025,2.311122) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P51812/4_raxmlng_ancestral/P51812.raxml.log Analysis started: 02-Jun-2021 15:16:19 / finished: 02-Jun-2021 15:17:05 Elapsed time: 46.486 seconds