RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 14-Jul-2021 03:49:25 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/2_msa/P51124_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/2_msa/P51124_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 208 sites WARNING: Sequences tr_G3R1Y2_G3R1Y2_GORGO_9595 and tr_H2Q5Y1_H2Q5Y1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R1Y2_G3R1Y2_GORGO_9595 and tr_A0A2R9BBI1_A0A2R9BBI1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PY34_H2PY34_PANTR_9598 and tr_A0A2R9AE93_A0A2R9AE93_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QGZ0_H2QGZ0_PANTR_9598 and tr_A0A2R9BZA4_A0A2R9BZA4_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QGZ3_H2QGZ3_PANTR_9598 and tr_A0A2R9CLY3_A0A2R9CLY3_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QGZ4_H2QGZ4_PANTR_9598 and sp_Q9UKR3_KLK13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QL28_H2QL28_PANTR_9598 and tr_A0A2R9AG78_A0A2R9AG78_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QQW5_H2QQW5_PANTR_9598 and tr_A0A2R8ZGB4_A0A2R8ZGB4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M0R5I8_M0R5I8_RAT_10116 and tr_Q63636_Q63636_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5QNS9_A0A1D5QNS9_MACMU_9544 and tr_A0A2K6C240_A0A2K6C240_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7EGM1_F7EGM1_MACMU_9544 and tr_A0A2K6CD39_A0A2K6CD39_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NMD1_G7NMD1_MACMU_9544 and tr_G7PYF9_G7PYF9_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7Q1F4_G7Q1F4_MACFA_9541 and tr_A0A2K5L8F7_A0A2K5L8F7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7Q1F4_G7Q1F4_MACFA_9541 and tr_A0A2K6DRB7_A0A2K6DRB7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MMZ5_A0A096MMZ5_PAPAN_9555 and tr_A0A2K5LBN1_A0A2K5LBN1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MMZ5_A0A096MMZ5_PAPAN_9555 and tr_A0A2K5ZAR1_A0A2K5ZAR1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A0MVJ6_A0A0A0MVJ6_PAPAN_9555 and tr_A0A2K5M5U8_A0A2K5M5U8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MMZ8_A0A2I3MMZ8_PAPAN_9555 and tr_A0A2K5KJ65_A0A2K5KJ65_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1S3NEI4_A0A1S3NEI4_SALSA_8030 and tr_A0A060Y8C4_A0A060Y8C4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226N1Y3_A0A226N1Y3_CALSU_9009 and tr_A0A226NSJ2_A0A226NSJ2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0R367_A0A2D0R367_ICTPU_7998 and tr_A0A2D0R3X1_A0A2D0R3X1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5MIW8_A0A2K5MIW8_CERAT_9531 and tr_A0A2K5Y9Q1_A0A2K5Y9Q1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5MSE9_A0A2K5MSE9_CERAT_9531 and tr_A0A2K5YY00_A0A2K5YY00_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5MT20_A0A2K5MT20_CERAT_9531 and tr_A0A2K5XTH4_A0A2K5XTH4_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 24 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.reduced.phy Alignment comprises 1 partitions and 208 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 208 / 208 Gaps: 1.78 % Invariant sites: 0.96 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 208 / 16640 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -405650.521000] Initial branch length optimization [00:00:06 -352797.266424] Model parameter optimization (eps = 10.000000) [00:00:56 -351833.464707] AUTODETECT spr round 1 (radius: 5) [00:04:21 -268864.136548] AUTODETECT spr round 2 (radius: 10) [00:08:20 -195505.167495] AUTODETECT spr round 3 (radius: 15) [00:12:30 -170679.346628] AUTODETECT spr round 4 (radius: 20) [00:17:38 -159963.239007] AUTODETECT spr round 5 (radius: 25) [00:24:33 -158730.166835] SPR radius for FAST iterations: 25 (autodetect) [00:24:33 -158730.166835] Model parameter optimization (eps = 3.000000) [00:25:03 -158541.055449] FAST spr round 1 (radius: 25) [00:30:04 -139237.808279] FAST spr round 2 (radius: 25) [00:33:30 -138377.589525] FAST spr round 3 (radius: 25) [00:36:25 -138320.079796] FAST spr round 4 (radius: 25) [00:38:58 -138304.970645] FAST spr round 5 (radius: 25) [00:41:18 -138304.334220] FAST spr round 6 (radius: 25) [00:43:34 -138304.334185] Model parameter optimization (eps = 1.000000) [00:43:45 -138303.717220] SLOW spr round 1 (radius: 5) [00:47:28 -138260.835383] SLOW spr round 2 (radius: 5) [00:50:52 -138247.822076] SLOW spr round 3 (radius: 5) [00:54:01 -138246.962071] SLOW spr round 4 (radius: 5) [00:57:07 -138246.961542] SLOW spr round 5 (radius: 10) [01:00:21 -138246.552567] SLOW spr round 6 (radius: 5) [01:04:37 -138238.584336] SLOW spr round 7 (radius: 5) [01:08:14 -138235.730020] SLOW spr round 8 (radius: 5) [01:11:34 -138235.729341] SLOW spr round 9 (radius: 10) [01:14:50 -138235.729230] SLOW spr round 10 (radius: 15) [01:21:08 -138235.729142] SLOW spr round 11 (radius: 20) [01:31:35] [worker #2] ML tree search #3, logLikelihood: -138253.507245 [01:32:04 -138235.729055] SLOW spr round 12 (radius: 25) [01:34:44] [worker #1] ML tree search #2, logLikelihood: -138253.264509 [01:36:46] [worker #3] ML tree search #4, logLikelihood: -138248.503754 [01:47:16 -138235.728967] Model parameter optimization (eps = 0.100000) [01:47:23] [worker #0] ML tree search #1, logLikelihood: -138235.708535 [01:47:23 -404765.820183] Initial branch length optimization [01:47:28 -351958.945639] Model parameter optimization (eps = 10.000000) [01:48:10 -351056.768253] AUTODETECT spr round 1 (radius: 5) [01:51:35 -267478.918298] AUTODETECT spr round 2 (radius: 10) [01:55:33 -196958.489521] AUTODETECT spr round 3 (radius: 15) [01:59:54 -166689.517510] AUTODETECT spr round 4 (radius: 20) [02:05:48 -158198.648424] AUTODETECT spr round 5 (radius: 25) [02:13:56 -155892.048704] SPR radius for FAST iterations: 25 (autodetect) [02:13:56 -155892.048704] Model parameter optimization (eps = 3.000000) [02:14:24 -155801.568719] FAST spr round 1 (radius: 25) [02:19:32 -139154.148160] FAST spr round 2 (radius: 25) [02:22:56 -138449.564218] FAST spr round 3 (radius: 25) [02:25:50 -138346.336107] FAST spr round 4 (radius: 25) [02:28:24 -138331.503571] FAST spr round 5 (radius: 25) [02:30:46 -138329.667494] FAST spr round 6 (radius: 25) [02:33:06 -138329.667329] Model parameter optimization (eps = 1.000000) [02:33:24 -138326.369699] SLOW spr round 1 (radius: 5) [02:37:01 -138293.525530] SLOW spr round 2 (radius: 5) [02:40:26 -138286.539342] SLOW spr round 3 (radius: 5) [02:43:40 -138282.963003] SLOW spr round 4 (radius: 5) [02:46:49 -138282.961961] SLOW spr round 5 (radius: 10) [02:50:06 -138281.421955] SLOW spr round 6 (radius: 5) [02:54:22 -138280.215790] SLOW spr round 7 (radius: 5) [02:58:03 -138278.976722] SLOW spr round 8 (radius: 5) [03:01:27 -138278.976517] SLOW spr round 9 (radius: 10) [03:04:04] [worker #1] ML tree search #6, logLikelihood: -138252.298792 [03:04:47 -138278.976480] SLOW spr round 10 (radius: 15) [03:10:24] [worker #2] ML tree search #7, logLikelihood: -138289.984806 [03:11:17 -138278.976445] SLOW spr round 11 (radius: 20) [03:15:34] [worker #3] ML tree search #8, logLikelihood: -138403.109828 [03:22:54 -138278.976410] SLOW spr round 12 (radius: 25) [03:38:20 -138278.976375] Model parameter optimization (eps = 0.100000) [03:38:27] [worker #0] ML tree search #5, logLikelihood: -138278.946367 [03:38:27 -403497.904694] Initial branch length optimization [03:38:31 -351275.774380] Model parameter optimization (eps = 10.000000) [03:39:15 -350394.097776] AUTODETECT spr round 1 (radius: 5) [03:42:42 -264464.387721] AUTODETECT spr round 2 (radius: 10) [03:46:42 -200713.335786] AUTODETECT spr round 3 (radius: 15) [03:51:04 -171757.894453] AUTODETECT spr round 4 (radius: 20) [03:55:51 -161735.063242] AUTODETECT spr round 5 (radius: 25) [04:03:54 -157470.505081] SPR radius for FAST iterations: 25 (autodetect) [04:03:54 -157470.505081] Model parameter optimization (eps = 3.000000) [04:04:17 -157368.650279] FAST spr round 1 (radius: 25) [04:09:31 -139162.803889] FAST spr round 2 (radius: 25) [04:13:05 -138396.898133] FAST spr round 3 (radius: 25) [04:16:10 -138322.793593] FAST spr round 4 (radius: 25) [04:18:39 -138320.410364] FAST spr round 5 (radius: 25) [04:21:01 -138320.410299] Model parameter optimization (eps = 1.000000) [04:21:07 -138320.334829] SLOW spr round 1 (radius: 5) [04:24:55 -138279.416163] SLOW spr round 2 (radius: 5) [04:28:27 -138263.575678] SLOW spr round 3 (radius: 5) [04:31:44 -138263.575160] SLOW spr round 4 (radius: 10) [04:35:08 -138263.194963] SLOW spr round 5 (radius: 5) [04:39:33 -138259.682824] SLOW spr round 6 (radius: 5) [04:43:17 -138259.682690] SLOW spr round 7 (radius: 10) [04:46:46 -138259.682617] SLOW spr round 8 (radius: 15) [04:47:52] [worker #3] ML tree search #12, logLikelihood: -138247.362507 [04:48:05] [worker #1] ML tree search #10, logLikelihood: -138309.061021 [04:53:17 -138259.682544] SLOW spr round 9 (radius: 20) [04:54:59] [worker #2] ML tree search #11, logLikelihood: -138264.429140 [05:05:59 -138259.682472] SLOW spr round 10 (radius: 25) [05:22:26 -138259.682399] Model parameter optimization (eps = 0.100000) [05:22:31] [worker #0] ML tree search #9, logLikelihood: -138259.672761 [05:22:32 -405146.634264] Initial branch length optimization [05:22:37 -352301.145387] Model parameter optimization (eps = 10.000000) [05:23:35 -351432.133794] AUTODETECT spr round 1 (radius: 5) [05:27:01 -273096.415621] AUTODETECT spr round 2 (radius: 10) [05:30:57 -195019.405077] AUTODETECT spr round 3 (radius: 15) [05:35:10 -169307.642070] AUTODETECT spr round 4 (radius: 20) [05:41:10 -159535.801862] AUTODETECT spr round 5 (radius: 25) [05:48:36 -157053.773642] SPR radius for FAST iterations: 25 (autodetect) [05:48:36 -157053.773642] Model parameter optimization (eps = 3.000000) [05:48:45 -157051.962609] FAST spr round 1 (radius: 25) [05:53:40 -139313.694590] FAST spr round 2 (radius: 25) [05:57:04 -138539.862505] FAST spr round 3 (radius: 25) [05:59:53 -138501.506955] FAST spr round 4 (radius: 25) [06:02:19 -138498.518894] FAST spr round 5 (radius: 25) [06:04:37 -138498.518684] Model parameter optimization (eps = 1.000000) [06:04:59 -138341.996585] SLOW spr round 1 (radius: 5) [06:08:47 -138289.872480] SLOW spr round 2 (radius: 5) [06:12:12 -138284.358796] SLOW spr round 3 (radius: 5) [06:15:26 -138284.089396] SLOW spr round 4 (radius: 5) [06:18:34 -138284.088511] SLOW spr round 5 (radius: 10) [06:21:35] [worker #3] ML tree search #16, logLikelihood: -138252.280487 [06:21:50 -138281.952190] SLOW spr round 6 (radius: 5) [06:26:07 -138281.645042] SLOW spr round 7 (radius: 5) [06:29:46 -138281.644525] SLOW spr round 8 (radius: 10) [06:33:11 -138281.644127] SLOW spr round 9 (radius: 15) [06:33:33] [worker #2] ML tree search #15, logLikelihood: -138257.029140 [06:39:26 -138281.643729] SLOW spr round 10 (radius: 20) [06:47:20] [worker #1] ML tree search #14, logLikelihood: -138251.680683 [06:50:53 -138281.643331] SLOW spr round 11 (radius: 25) [07:06:00 -138281.642933] Model parameter optimization (eps = 0.100000) [07:06:12] [worker #0] ML tree search #13, logLikelihood: -138281.437760 [07:06:12 -406758.096211] Initial branch length optimization [07:06:17 -353899.173957] Model parameter optimization (eps = 10.000000) [07:07:34 -352983.556029] AUTODETECT spr round 1 (radius: 5) [07:11:05 -265780.873191] AUTODETECT spr round 2 (radius: 10) [07:15:04 -185463.004340] AUTODETECT spr round 3 (radius: 15) [07:19:18 -160767.381619] AUTODETECT spr round 4 (radius: 20) [07:25:14 -153978.324456] AUTODETECT spr round 5 (radius: 25) [07:32:38 -153217.790283] SPR radius for FAST iterations: 25 (autodetect) [07:32:38 -153217.790283] Model parameter optimization (eps = 3.000000) [07:33:11 -153057.249377] FAST spr round 1 (radius: 25) [07:38:10 -138995.841331] FAST spr round 2 (radius: 25) [07:41:23 -138432.358067] FAST spr round 3 (radius: 25) [07:44:12 -138366.060614] FAST spr round 4 (radius: 25) [07:46:41 -138360.802955] FAST spr round 5 (radius: 25) [07:49:05 -138357.284798] FAST spr round 6 (radius: 25) [07:51:23 -138357.284729] Model parameter optimization (eps = 1.000000) [07:51:41 -138339.417467] SLOW spr round 1 (radius: 5) [07:54:39] [worker #3] ML tree search #20, logLikelihood: -138289.461275 [07:55:16 -138301.131141] SLOW spr round 2 (radius: 5) [07:58:37 -138293.019368] SLOW spr round 3 (radius: 5) [08:01:49 -138291.687731] SLOW spr round 4 (radius: 5) [08:05:00 -138290.480088] SLOW spr round 5 (radius: 5) [08:08:07 -138290.479988] SLOW spr round 6 (radius: 10) [08:11:25 -138290.479987] SLOW spr round 7 (radius: 15) [08:17:45 -138290.479987] SLOW spr round 8 (radius: 20) [08:19:46] [worker #2] ML tree search #19, logLikelihood: -138383.897843 [08:28:28 -138290.479987] SLOW spr round 9 (radius: 25) [08:29:31] [worker #1] ML tree search #18, logLikelihood: -138254.859783 [08:43:07 -138290.479987] Model parameter optimization (eps = 0.100000) [08:43:15] [worker #0] ML tree search #17, logLikelihood: -138290.453667 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.158462,0.196108) (0.226220,0.312868) (0.283751,0.917313) (0.331567,1.923770) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -138235.708535 AIC score: 280481.417070 / AICc score: 8324541.417070 / BIC score: 287173.180920 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=208). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P51124/3_mltree/P51124.raxml.log Analysis started: 14-Jul-2021 03:49:25 / finished: 14-Jul-2021 12:32:40 Elapsed time: 31395.471 seconds