RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 18-Jun-2021 12:15:08 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/2_msa/P50747_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/2_msa/P50747_trimmed_msa.fasta
[00:00:00] Loaded alignment with 493 taxa and 489 sites

WARNING: Sequences tr_B4QWW3_B4QWW3_DROSI_7240 and tr_B4I410_B4I410_DROSE_7238 are exactly identical!
WARNING: Sequences tr_Q2TZV1_Q2TZV1_ASPOR_510516 and tr_A0A1S9DDF7_A0A1S9DDF7_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_F6Q0T9_F6Q0T9_MACMU_9544 and tr_A0A2K6CEM0_A0A2K6CEM0_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A094E3S8_A0A094E3S8_9PEZI_1420912 and tr_A0A2P2SWI9_A0A2P2SWI9_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A2D0SR86_A0A2D0SR86_ICTPU_7998 and tr_A0A2D0SR97_A0A2D0SR97_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SR86_A0A2D0SR86_ICTPU_7998 and tr_A0A2D0SSD5_A0A2D0SSD5_ICTPU_7998 are exactly identical!
WARNING: Duplicate sequences found: 6

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.reduced.phy

Alignment comprises 1 partitions and 489 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 489 / 489
Gaps: 20.81 %
Invariant sites: 0.41 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 493 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 70 / 5600
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -395200.120883] Initial branch length optimization
[00:00:01 -331858.244833] Model parameter optimization (eps = 10.000000)
[00:00:13 -330970.536191] AUTODETECT spr round 1 (radius: 5)
[00:00:40 -257280.109433] AUTODETECT spr round 2 (radius: 10)
[00:01:11 -215574.523606] AUTODETECT spr round 3 (radius: 15)
[00:01:45 -189634.979237] AUTODETECT spr round 4 (radius: 20)
[00:02:24 -178105.633050] AUTODETECT spr round 5 (radius: 25)
[00:03:07 -176426.000778] SPR radius for FAST iterations: 25 (autodetect)
[00:03:07 -176426.000778] Model parameter optimization (eps = 3.000000)
[00:03:17 -176262.307583] FAST spr round 1 (radius: 25)
[00:03:58 -165361.912138] FAST spr round 2 (radius: 25)
[00:04:31 -164960.998719] FAST spr round 3 (radius: 25)
[00:04:58 -164945.488952] FAST spr round 4 (radius: 25)
[00:05:24 -164941.626732] FAST spr round 5 (radius: 25)
[00:05:48 -164941.626716] Model parameter optimization (eps = 1.000000)
[00:05:53 -164938.701089] SLOW spr round 1 (radius: 5)
[00:06:34 -164887.674458] SLOW spr round 2 (radius: 5)
[00:07:12 -164882.427791] SLOW spr round 3 (radius: 5)
[00:07:47 -164882.427752] SLOW spr round 4 (radius: 10)
[00:08:25 -164882.427744] SLOW spr round 5 (radius: 15)
[00:09:23 -164882.427738] SLOW spr round 6 (radius: 20)
[00:10:45 -164882.427734] SLOW spr round 7 (radius: 25)
[00:12:14 -164882.427729] Model parameter optimization (eps = 0.100000)

[00:12:19] ML tree search #1, logLikelihood: -164882.309734

[00:12:19 -401267.440793] Initial branch length optimization
[00:12:21 -337939.377432] Model parameter optimization (eps = 10.000000)
[00:12:34 -337032.956654] AUTODETECT spr round 1 (radius: 5)
[00:13:02 -251982.121415] AUTODETECT spr round 2 (radius: 10)
[00:13:33 -204511.701314] AUTODETECT spr round 3 (radius: 15)
[00:14:10 -188217.818299] AUTODETECT spr round 4 (radius: 20)
[00:14:55 -182429.805266] AUTODETECT spr round 5 (radius: 25)
[00:15:39 -182108.603599] SPR radius for FAST iterations: 25 (autodetect)
[00:15:39 -182108.603599] Model parameter optimization (eps = 3.000000)
[00:15:50 -182008.434637] FAST spr round 1 (radius: 25)
[00:16:30 -165596.014409] FAST spr round 2 (radius: 25)
[00:17:04 -164981.602936] FAST spr round 3 (radius: 25)
[00:17:32 -164953.121653] FAST spr round 4 (radius: 25)
[00:17:59 -164942.683038] FAST spr round 5 (radius: 25)
[00:18:23 -164942.681641] Model parameter optimization (eps = 1.000000)
[00:18:30 -164937.678323] SLOW spr round 1 (radius: 5)
[00:19:10 -164896.684535] SLOW spr round 2 (radius: 5)
[00:19:46 -164896.573718] SLOW spr round 3 (radius: 5)
[00:20:22 -164896.572152] SLOW spr round 4 (radius: 10)
[00:20:59 -164896.571807] SLOW spr round 5 (radius: 15)
[00:21:56 -164896.571731] SLOW spr round 6 (radius: 20)
[00:23:14 -164896.571712] SLOW spr round 7 (radius: 25)
[00:24:42 -164896.571706] Model parameter optimization (eps = 0.100000)

[00:24:45] ML tree search #2, logLikelihood: -164896.487669

[00:24:45 -395279.836252] Initial branch length optimization
[00:24:46 -333376.985940] Model parameter optimization (eps = 10.000000)
[00:24:59 -332466.633712] AUTODETECT spr round 1 (radius: 5)
[00:25:26 -247392.775045] AUTODETECT spr round 2 (radius: 10)
[00:25:57 -204123.941893] AUTODETECT spr round 3 (radius: 15)
[00:26:31 -189140.761589] AUTODETECT spr round 4 (radius: 20)
[00:27:16 -181469.923154] AUTODETECT spr round 5 (radius: 25)
[00:28:06 -180760.791996] SPR radius for FAST iterations: 25 (autodetect)
[00:28:06 -180760.791996] Model parameter optimization (eps = 3.000000)
[00:28:15 -180650.238801] FAST spr round 1 (radius: 25)
[00:28:59 -165740.264506] FAST spr round 2 (radius: 25)
[00:29:33 -165024.985504] FAST spr round 3 (radius: 25)
[00:30:04 -164963.458551] FAST spr round 4 (radius: 25)
[00:30:33 -164943.081792] FAST spr round 5 (radius: 25)
[00:30:58 -164934.937212] FAST spr round 6 (radius: 25)
[00:31:22 -164934.936330] Model parameter optimization (eps = 1.000000)
[00:31:29 -164928.795466] SLOW spr round 1 (radius: 5)
[00:32:09 -164890.900793] SLOW spr round 2 (radius: 5)
[00:32:45 -164890.896478] SLOW spr round 3 (radius: 10)
[00:33:23 -164890.869289] SLOW spr round 4 (radius: 15)
[00:34:20 -164890.868212] SLOW spr round 5 (radius: 20)
[00:35:38 -164890.868078] SLOW spr round 6 (radius: 25)
[00:37:11 -164890.868059] Model parameter optimization (eps = 0.100000)

[00:37:14] ML tree search #3, logLikelihood: -164890.854067

[00:37:14 -397892.599141] Initial branch length optimization
[00:37:15 -336652.925238] Model parameter optimization (eps = 10.000000)
[00:37:28 -335730.052978] AUTODETECT spr round 1 (radius: 5)
[00:37:55 -258695.323901] AUTODETECT spr round 2 (radius: 10)
[00:38:27 -203772.501501] AUTODETECT spr round 3 (radius: 15)
[00:39:06 -181223.786316] AUTODETECT spr round 4 (radius: 20)
[00:39:51 -178314.982501] AUTODETECT spr round 5 (radius: 25)
[00:40:40 -178279.478461] SPR radius for FAST iterations: 25 (autodetect)
[00:40:40 -178279.478461] Model parameter optimization (eps = 3.000000)
[00:40:50 -178142.503872] FAST spr round 1 (radius: 25)
[00:41:30 -165451.191813] FAST spr round 2 (radius: 25)
[00:42:02 -164995.587406] FAST spr round 3 (radius: 25)
[00:42:30 -164976.246566] FAST spr round 4 (radius: 25)
[00:42:56 -164961.061470] FAST spr round 5 (radius: 25)
[00:43:21 -164955.543945] FAST spr round 6 (radius: 25)
[00:43:45 -164955.542893] Model parameter optimization (eps = 1.000000)
[00:43:52 -164953.348319] SLOW spr round 1 (radius: 5)
[00:44:32 -164888.604880] SLOW spr round 2 (radius: 5)
[00:45:10 -164883.170544] SLOW spr round 3 (radius: 5)
[00:45:47 -164883.168748] SLOW spr round 4 (radius: 10)
[00:46:25 -164883.168459] SLOW spr round 5 (radius: 15)
[00:47:24 -164883.168395] SLOW spr round 6 (radius: 20)
[00:48:46 -164883.168379] SLOW spr round 7 (radius: 25)
[00:50:21 -164883.168373] Model parameter optimization (eps = 0.100000)

[00:50:26] ML tree search #4, logLikelihood: -164882.832271

[00:50:26 -396851.375161] Initial branch length optimization
[00:50:28 -334299.737376] Model parameter optimization (eps = 10.000000)
[00:50:44 -333430.415656] AUTODETECT spr round 1 (radius: 5)
[00:51:12 -255493.352329] AUTODETECT spr round 2 (radius: 10)
[00:51:44 -210842.051651] AUTODETECT spr round 3 (radius: 15)
[00:52:20 -187211.413357] AUTODETECT spr round 4 (radius: 20)
[00:53:02 -182742.959167] AUTODETECT spr round 5 (radius: 25)
[00:53:51 -182290.372562] SPR radius for FAST iterations: 25 (autodetect)
[00:53:51 -182290.372562] Model parameter optimization (eps = 3.000000)
[00:54:03 -182171.685254] FAST spr round 1 (radius: 25)
[00:54:48 -165688.219908] FAST spr round 2 (radius: 25)
[00:55:24 -164987.795161] FAST spr round 3 (radius: 25)
[00:55:56 -164945.787108] FAST spr round 4 (radius: 25)
[00:56:22 -164934.481290] FAST spr round 5 (radius: 25)
[00:56:47 -164930.102355] FAST spr round 6 (radius: 25)
[00:57:11 -164930.101935] Model parameter optimization (eps = 1.000000)
[00:57:18 -164927.395768] SLOW spr round 1 (radius: 5)
[00:58:01 -164885.113004] SLOW spr round 2 (radius: 5)
[00:58:41 -164876.006962] SLOW spr round 3 (radius: 5)
[00:59:19 -164873.662170] SLOW spr round 4 (radius: 5)
[00:59:54 -164873.658076] SLOW spr round 5 (radius: 10)
[01:00:31 -164873.657701] SLOW spr round 6 (radius: 15)
[01:01:30 -164873.657655] SLOW spr round 7 (radius: 20)
[01:02:51 -164873.657647] SLOW spr round 8 (radius: 25)
[01:04:25 -164873.657645] Model parameter optimization (eps = 0.100000)

[01:04:27] ML tree search #5, logLikelihood: -164873.628944

[01:04:27 -398625.464101] Initial branch length optimization
[01:04:29 -334754.345053] Model parameter optimization (eps = 10.000000)
[01:04:44 -333880.912211] AUTODETECT spr round 1 (radius: 5)
[01:05:12 -256503.557869] AUTODETECT spr round 2 (radius: 10)
[01:05:43 -207169.124988] AUTODETECT spr round 3 (radius: 15)
[01:06:19 -183745.006377] AUTODETECT spr round 4 (radius: 20)
[01:07:01 -179707.184854] AUTODETECT spr round 5 (radius: 25)
[01:07:48 -179209.230219] SPR radius for FAST iterations: 25 (autodetect)
[01:07:48 -179209.230219] Model parameter optimization (eps = 3.000000)
[01:08:01 -179042.565750] FAST spr round 1 (radius: 25)
[01:08:44 -165527.580504] FAST spr round 2 (radius: 25)
[01:09:18 -164978.039544] FAST spr round 3 (radius: 25)
[01:09:50 -164932.306702] FAST spr round 4 (radius: 25)
[01:10:15 -164931.099732] FAST spr round 5 (radius: 25)
[01:10:40 -164931.099247] Model parameter optimization (eps = 1.000000)
[01:10:48 -164929.426612] SLOW spr round 1 (radius: 5)
[01:11:29 -164881.432753] SLOW spr round 2 (radius: 5)
[01:12:07 -164876.805464] SLOW spr round 3 (radius: 5)
[01:12:44 -164875.224930] SLOW spr round 4 (radius: 5)
[01:13:20 -164875.224903] SLOW spr round 5 (radius: 10)
[01:13:57 -164875.224898] SLOW spr round 6 (radius: 15)
[01:14:56 -164875.224895] SLOW spr round 7 (radius: 20)
[01:16:20 -164875.224892] SLOW spr round 8 (radius: 25)
[01:17:55 -164875.224889] Model parameter optimization (eps = 0.100000)

[01:17:57] ML tree search #6, logLikelihood: -164875.176775

[01:17:57 -396395.183048] Initial branch length optimization
[01:17:59 -334910.120354] Model parameter optimization (eps = 10.000000)
[01:18:11 -334028.158216] AUTODETECT spr round 1 (radius: 5)
[01:18:38 -252476.146614] AUTODETECT spr round 2 (radius: 10)
[01:19:09 -207237.646133] AUTODETECT spr round 3 (radius: 15)
[01:19:48 -183918.862858] AUTODETECT spr round 4 (radius: 20)
[01:20:31 -180638.556463] AUTODETECT spr round 5 (radius: 25)
[01:21:16 -180446.604678] SPR radius for FAST iterations: 25 (autodetect)
[01:21:16 -180446.604678] Model parameter optimization (eps = 3.000000)
[01:21:26 -180307.977089] FAST spr round 1 (radius: 25)
[01:22:07 -165750.549839] FAST spr round 2 (radius: 25)
[01:22:42 -165032.132306] FAST spr round 3 (radius: 25)
[01:23:12 -164933.619893] FAST spr round 4 (radius: 25)
[01:23:38 -164933.178785] FAST spr round 5 (radius: 25)
[01:24:04 -164929.977371] FAST spr round 6 (radius: 25)
[01:24:28 -164929.977268] Model parameter optimization (eps = 1.000000)
[01:24:34 -164928.915326] SLOW spr round 1 (radius: 5)
[01:25:14 -164892.452106] SLOW spr round 2 (radius: 5)
[01:25:53 -164882.193339] SLOW spr round 3 (radius: 5)
[01:26:29 -164880.704831] SLOW spr round 4 (radius: 5)
[01:27:06 -164877.310647] SLOW spr round 5 (radius: 5)
[01:27:42 -164877.310279] SLOW spr round 6 (radius: 10)
[01:28:20 -164877.310232] SLOW spr round 7 (radius: 15)
[01:29:19 -164877.310223] SLOW spr round 8 (radius: 20)
[01:30:40 -164877.310218] SLOW spr round 9 (radius: 25)
[01:32:12 -164877.310215] Model parameter optimization (eps = 0.100000)

[01:32:14] ML tree search #7, logLikelihood: -164877.293084

[01:32:14 -401713.733591] Initial branch length optimization
[01:32:16 -337475.184691] Model parameter optimization (eps = 10.000000)
[01:32:30 -336523.705127] AUTODETECT spr round 1 (radius: 5)
[01:32:59 -249336.945976] AUTODETECT spr round 2 (radius: 10)
[01:33:30 -194752.516567] AUTODETECT spr round 3 (radius: 15)
[01:34:06 -179371.837642] AUTODETECT spr round 4 (radius: 20)
[01:34:48 -176622.364096] AUTODETECT spr round 5 (radius: 25)
[01:35:37 -176562.001229] SPR radius for FAST iterations: 25 (autodetect)
[01:35:37 -176562.001229] Model parameter optimization (eps = 3.000000)
[01:35:46 -176427.159240] FAST spr round 1 (radius: 25)
[01:36:28 -165589.962036] FAST spr round 2 (radius: 25)
[01:37:03 -164997.510321] FAST spr round 3 (radius: 25)
[01:37:34 -164939.374464] FAST spr round 4 (radius: 25)
[01:38:00 -164924.086666] FAST spr round 5 (radius: 25)
[01:38:24 -164924.086576] Model parameter optimization (eps = 1.000000)
[01:38:32 -164918.286066] SLOW spr round 1 (radius: 5)
[01:39:14 -164877.255367] SLOW spr round 2 (radius: 5)
[01:39:51 -164875.314698] SLOW spr round 3 (radius: 5)
[01:40:27 -164875.313682] SLOW spr round 4 (radius: 10)
[01:41:04 -164875.313582] SLOW spr round 5 (radius: 15)
[01:42:03 -164875.313565] SLOW spr round 6 (radius: 20)
[01:43:22 -164875.313559] SLOW spr round 7 (radius: 25)
[01:44:54 -164875.313555] Model parameter optimization (eps = 0.100000)

[01:44:56] ML tree search #8, logLikelihood: -164875.253281

[01:44:56 -396925.882620] Initial branch length optimization
[01:44:58 -336038.904805] Model parameter optimization (eps = 10.000000)
[01:45:11 -335144.181246] AUTODETECT spr round 1 (radius: 5)
[01:45:39 -253745.085453] AUTODETECT spr round 2 (radius: 10)
[01:46:10 -205679.390219] AUTODETECT spr round 3 (radius: 15)
[01:46:46 -182832.801488] AUTODETECT spr round 4 (radius: 20)
[01:47:25 -176604.992843] AUTODETECT spr round 5 (radius: 25)
[01:48:07 -176470.649110] SPR radius for FAST iterations: 25 (autodetect)
[01:48:07 -176470.649110] Model parameter optimization (eps = 3.000000)
[01:48:15 -176387.388192] FAST spr round 1 (radius: 25)
[01:48:57 -165719.117825] FAST spr round 2 (radius: 25)
[01:49:32 -165041.593290] FAST spr round 3 (radius: 25)
[01:50:03 -164949.528528] FAST spr round 4 (radius: 25)
[01:50:28 -164945.115371] FAST spr round 5 (radius: 25)
[01:50:52 -164945.115198] Model parameter optimization (eps = 1.000000)
[01:51:00 -164934.392571] SLOW spr round 1 (radius: 5)
[01:51:42 -164898.268748] SLOW spr round 2 (radius: 5)
[01:52:19 -164896.575060] SLOW spr round 3 (radius: 5)
[01:52:56 -164895.277901] SLOW spr round 4 (radius: 5)
[01:53:32 -164895.277539] SLOW spr round 5 (radius: 10)
[01:54:10 -164894.555842] SLOW spr round 6 (radius: 5)
[01:54:56 -164890.260397] SLOW spr round 7 (radius: 5)
[01:55:36 -164890.260360] SLOW spr round 8 (radius: 10)
[01:56:14 -164890.260354] SLOW spr round 9 (radius: 15)
[01:57:11 -164890.260349] SLOW spr round 10 (radius: 20)
[01:58:29 -164890.260345] SLOW spr round 11 (radius: 25)
[02:00:00 -164890.260340] Model parameter optimization (eps = 0.100000)

[02:00:02] ML tree search #9, logLikelihood: -164890.251983

[02:00:02 -396351.700813] Initial branch length optimization
[02:00:03 -335214.745496] Model parameter optimization (eps = 10.000000)
[02:00:14 -334306.246095] AUTODETECT spr round 1 (radius: 5)
[02:00:42 -246818.654395] AUTODETECT spr round 2 (radius: 10)
[02:01:13 -200325.035479] AUTODETECT spr round 3 (radius: 15)
[02:01:49 -181979.798108] AUTODETECT spr round 4 (radius: 20)
[02:02:29 -178361.587305] AUTODETECT spr round 5 (radius: 25)
[02:03:12 -177893.003639] SPR radius for FAST iterations: 25 (autodetect)
[02:03:12 -177893.003639] Model parameter optimization (eps = 3.000000)
[02:03:23 -177741.438403] FAST spr round 1 (radius: 25)
[02:04:05 -165391.176182] FAST spr round 2 (radius: 25)
[02:04:38 -164986.938410] FAST spr round 3 (radius: 25)
[02:05:06 -164962.271178] FAST spr round 4 (radius: 25)
[02:05:30 -164960.577387] FAST spr round 5 (radius: 25)
[02:05:55 -164960.577103] Model parameter optimization (eps = 1.000000)
[02:06:00 -164958.213674] SLOW spr round 1 (radius: 5)
[02:06:41 -164913.158821] SLOW spr round 2 (radius: 5)
[02:07:18 -164911.612644] SLOW spr round 3 (radius: 5)
[02:07:55 -164905.116814] SLOW spr round 4 (radius: 5)
[02:08:31 -164903.677886] SLOW spr round 5 (radius: 5)
[02:09:06 -164903.677587] SLOW spr round 6 (radius: 10)
[02:09:43 -164903.677577] SLOW spr round 7 (radius: 15)
[02:10:41 -164903.677577] SLOW spr round 8 (radius: 20)
[02:12:01 -164903.677576] SLOW spr round 9 (radius: 25)
[02:13:32 -164903.677576] Model parameter optimization (eps = 0.100000)

[02:13:35] ML tree search #10, logLikelihood: -164903.621991

[02:13:35 -399080.101457] Initial branch length optimization
[02:13:36 -336841.731206] Model parameter optimization (eps = 10.000000)
[02:13:50 -335954.101706] AUTODETECT spr round 1 (radius: 5)
[02:14:18 -253717.166205] AUTODETECT spr round 2 (radius: 10)
[02:14:49 -203572.079176] AUTODETECT spr round 3 (radius: 15)
[02:15:25 -181614.662676] AUTODETECT spr round 4 (radius: 20)
[02:16:06 -177764.912448] AUTODETECT spr round 5 (radius: 25)
[02:16:49 -177599.869372] SPR radius for FAST iterations: 25 (autodetect)
[02:16:49 -177599.869372] Model parameter optimization (eps = 3.000000)
[02:17:00 -177439.409934] FAST spr round 1 (radius: 25)
[02:17:42 -165220.429321] FAST spr round 2 (radius: 25)
[02:18:15 -164998.607464] FAST spr round 3 (radius: 25)
[02:18:42 -164975.656183] FAST spr round 4 (radius: 25)
[02:19:06 -164975.656124] Model parameter optimization (eps = 1.000000)
[02:19:13 -164971.096207] SLOW spr round 1 (radius: 5)
[02:19:55 -164906.538760] SLOW spr round 2 (radius: 5)
[02:20:32 -164905.548127] SLOW spr round 3 (radius: 5)
[02:21:08 -164905.547838] SLOW spr round 4 (radius: 10)
[02:21:45 -164904.459634] SLOW spr round 5 (radius: 5)
[02:22:32 -164899.980749] SLOW spr round 6 (radius: 5)
[02:23:12 -164899.980437] SLOW spr round 7 (radius: 10)
[02:23:51 -164899.980427] SLOW spr round 8 (radius: 15)
[02:24:49 -164899.980423] SLOW spr round 9 (radius: 20)
[02:26:09 -164899.980420] SLOW spr round 10 (radius: 25)
[02:27:39 -164899.980417] Model parameter optimization (eps = 0.100000)

[02:27:42] ML tree search #11, logLikelihood: -164899.891748

[02:27:42 -397052.469614] Initial branch length optimization
[02:27:44 -331988.867938] Model parameter optimization (eps = 10.000000)
[02:27:58 -331156.594470] AUTODETECT spr round 1 (radius: 5)
[02:28:25 -255803.138668] AUTODETECT spr round 2 (radius: 10)
[02:28:55 -214703.371595] AUTODETECT spr round 3 (radius: 15)
[02:29:29 -199449.393112] AUTODETECT spr round 4 (radius: 20)
[02:30:11 -187088.164403] AUTODETECT spr round 5 (radius: 25)
[02:30:57 -186253.612043] SPR radius for FAST iterations: 25 (autodetect)
[02:30:57 -186253.612043] Model parameter optimization (eps = 3.000000)
[02:31:07 -186121.884890] FAST spr round 1 (radius: 25)
[02:31:48 -165545.846459] FAST spr round 2 (radius: 25)
[02:32:21 -164969.536143] FAST spr round 3 (radius: 25)
[02:32:51 -164928.226832] FAST spr round 4 (radius: 25)
[02:33:16 -164919.424017] FAST spr round 5 (radius: 25)
[02:33:41 -164916.276294] FAST spr round 6 (radius: 25)
[02:34:05 -164916.276169] Model parameter optimization (eps = 1.000000)
[02:34:12 -164908.928002] SLOW spr round 1 (radius: 5)
[02:34:53 -164868.193604] SLOW spr round 2 (radius: 5)
[02:35:29 -164868.165051] SLOW spr round 3 (radius: 10)
[02:36:06 -164868.164939] SLOW spr round 4 (radius: 15)
[02:37:05 -164868.164934] SLOW spr round 5 (radius: 20)
[02:38:28 -164868.164931] SLOW spr round 6 (radius: 25)
[02:40:02 -164868.164929] Model parameter optimization (eps = 0.100000)

[02:40:08] ML tree search #12, logLikelihood: -164867.950623

[02:40:08 -400425.325799] Initial branch length optimization
[02:40:10 -335501.531984] Model parameter optimization (eps = 10.000000)
[02:40:23 -334644.129289] AUTODETECT spr round 1 (radius: 5)
[02:40:50 -254839.909349] AUTODETECT spr round 2 (radius: 10)
[02:41:21 -213959.417978] AUTODETECT spr round 3 (radius: 15)
[02:41:57 -185517.851783] AUTODETECT spr round 4 (radius: 20)
[02:42:40 -179023.662063] AUTODETECT spr round 5 (radius: 25)
[02:43:26 -178447.383717] SPR radius for FAST iterations: 25 (autodetect)
[02:43:26 -178447.383717] Model parameter optimization (eps = 3.000000)
[02:43:36 -178259.442030] FAST spr round 1 (radius: 25)
[02:44:18 -165535.098216] FAST spr round 2 (radius: 25)
[02:44:52 -165004.911530] FAST spr round 3 (radius: 25)
[02:45:22 -164969.567562] FAST spr round 4 (radius: 25)
[02:45:48 -164960.313089] FAST spr round 5 (radius: 25)
[02:46:14 -164952.155778] FAST spr round 6 (radius: 25)
[02:46:38 -164952.155568] Model parameter optimization (eps = 1.000000)
[02:46:44 -164948.854319] SLOW spr round 1 (radius: 5)
[02:47:26 -164914.419581] SLOW spr round 2 (radius: 5)
[02:48:04 -164906.440452] SLOW spr round 3 (radius: 5)
[02:48:41 -164896.884848] SLOW spr round 4 (radius: 5)
[02:49:17 -164895.757980] SLOW spr round 5 (radius: 5)
[02:49:53 -164895.757575] SLOW spr round 6 (radius: 10)
[02:50:30 -164895.757554] SLOW spr round 7 (radius: 15)
[02:51:29 -164895.757548] SLOW spr round 8 (radius: 20)
[02:52:50 -164895.757545] SLOW spr round 9 (radius: 25)
[02:54:21 -164895.757541] Model parameter optimization (eps = 0.100000)

[02:54:23] ML tree search #13, logLikelihood: -164895.717703

[02:54:23 -398485.924593] Initial branch length optimization
[02:54:25 -334649.428490] Model parameter optimization (eps = 10.000000)
[02:54:37 -333710.588526] AUTODETECT spr round 1 (radius: 5)
[02:55:05 -251707.726672] AUTODETECT spr round 2 (radius: 10)
[02:55:36 -207369.122265] AUTODETECT spr round 3 (radius: 15)
[02:56:10 -188146.644012] AUTODETECT spr round 4 (radius: 20)
[02:56:53 -178486.148898] AUTODETECT spr round 5 (radius: 25)
[02:57:42 -177799.336183] SPR radius for FAST iterations: 25 (autodetect)
[02:57:42 -177799.336183] Model parameter optimization (eps = 3.000000)
[02:57:51 -177675.202279] FAST spr round 1 (radius: 25)
[02:58:32 -165569.581838] FAST spr round 2 (radius: 25)
[02:59:06 -164951.436522] FAST spr round 3 (radius: 25)
[02:59:34 -164926.086477] FAST spr round 4 (radius: 25)
[02:59:58 -164926.086418] Model parameter optimization (eps = 1.000000)
[03:00:05 -164919.725980] SLOW spr round 1 (radius: 5)
[03:00:45 -164879.294892] SLOW spr round 2 (radius: 5)
[03:01:24 -164874.014784] SLOW spr round 3 (radius: 5)
[03:02:00 -164872.520031] SLOW spr round 4 (radius: 5)
[03:02:35 -164872.489170] SLOW spr round 5 (radius: 10)
[03:03:13 -164872.489137] SLOW spr round 6 (radius: 15)
[03:04:11 -164872.489134] SLOW spr round 7 (radius: 20)
[03:05:31 -164872.489132] SLOW spr round 8 (radius: 25)
[03:07:03 -164872.489129] Model parameter optimization (eps = 0.100000)

[03:07:06] ML tree search #14, logLikelihood: -164872.423996

[03:07:06 -402913.441174] Initial branch length optimization
[03:07:08 -337824.696134] Model parameter optimization (eps = 10.000000)
[03:07:22 -336880.338057] AUTODETECT spr round 1 (radius: 5)
[03:07:50 -245230.833265] AUTODETECT spr round 2 (radius: 10)
[03:08:21 -200163.726172] AUTODETECT spr round 3 (radius: 15)
[03:08:55 -183936.191159] AUTODETECT spr round 4 (radius: 20)
[03:09:32 -178995.025782] AUTODETECT spr round 5 (radius: 25)
[03:10:12 -176768.877360] SPR radius for FAST iterations: 25 (autodetect)
[03:10:12 -176768.877360] Model parameter optimization (eps = 3.000000)
[03:10:23 -176621.565993] FAST spr round 1 (radius: 25)
[03:11:05 -165346.264119] FAST spr round 2 (radius: 25)
[03:11:39 -164978.633704] FAST spr round 3 (radius: 25)
[03:12:09 -164944.516492] FAST spr round 4 (radius: 25)
[03:12:34 -164937.841838] FAST spr round 5 (radius: 25)
[03:12:58 -164937.841747] Model parameter optimization (eps = 1.000000)
[03:13:04 -164935.898644] SLOW spr round 1 (radius: 5)
[03:13:46 -164885.214565] SLOW spr round 2 (radius: 5)
[03:14:24 -164884.251078] SLOW spr round 3 (radius: 5)
[03:15:00 -164884.248622] SLOW spr round 4 (radius: 10)
[03:15:37 -164884.248081] SLOW spr round 5 (radius: 15)
[03:16:34 -164884.247956] SLOW spr round 6 (radius: 20)
[03:17:52 -164884.247925] SLOW spr round 7 (radius: 25)
[03:19:20 -164884.247914] Model parameter optimization (eps = 0.100000)

[03:19:22] ML tree search #15, logLikelihood: -164884.215867

[03:19:22 -400247.335142] Initial branch length optimization
[03:19:23 -336225.980585] Model parameter optimization (eps = 10.000000)
[03:19:37 -335394.675228] AUTODETECT spr round 1 (radius: 5)
[03:20:05 -255227.621639] AUTODETECT spr round 2 (radius: 10)
[03:20:37 -203810.649808] AUTODETECT spr round 3 (radius: 15)
[03:21:13 -189609.550260] AUTODETECT spr round 4 (radius: 20)
[03:21:57 -180200.138893] AUTODETECT spr round 5 (radius: 25)
[03:22:42 -179337.336855] SPR radius for FAST iterations: 25 (autodetect)
[03:22:42 -179337.336855] Model parameter optimization (eps = 3.000000)
[03:22:52 -179183.530091] FAST spr round 1 (radius: 25)
[03:23:33 -165710.214171] FAST spr round 2 (radius: 25)
[03:24:10 -164999.772943] FAST spr round 3 (radius: 25)
[03:24:41 -164946.941454] FAST spr round 4 (radius: 25)
[03:25:07 -164937.731555] FAST spr round 5 (radius: 25)
[03:25:32 -164936.221477] FAST spr round 6 (radius: 25)
[03:25:55 -164936.221319] Model parameter optimization (eps = 1.000000)
[03:26:02 -164932.207645] SLOW spr round 1 (radius: 5)
[03:26:43 -164882.623474] SLOW spr round 2 (radius: 5)
[03:27:20 -164877.654737] SLOW spr round 3 (radius: 5)
[03:27:55 -164877.651273] SLOW spr round 4 (radius: 10)
[03:28:33 -164877.650814] SLOW spr round 5 (radius: 15)
[03:29:32 -164877.650705] SLOW spr round 6 (radius: 20)
[03:30:53 -164877.650673] SLOW spr round 7 (radius: 25)
[03:32:28 -164877.650661] Model parameter optimization (eps = 0.100000)

[03:32:33] ML tree search #16, logLikelihood: -164877.462344

[03:32:33 -396109.803651] Initial branch length optimization
[03:32:34 -335257.393617] Model parameter optimization (eps = 10.000000)
[03:32:47 -334336.759428] AUTODETECT spr round 1 (radius: 5)
[03:33:15 -251523.916506] AUTODETECT spr round 2 (radius: 10)
[03:33:47 -204473.862316] AUTODETECT spr round 3 (radius: 15)
[03:34:24 -184298.834543] AUTODETECT spr round 4 (radius: 20)
[03:35:06 -180735.436784] AUTODETECT spr round 5 (radius: 25)
[03:35:53 -180684.605751] SPR radius for FAST iterations: 25 (autodetect)
[03:35:53 -180684.605751] Model parameter optimization (eps = 3.000000)
[03:36:06 -180567.767032] FAST spr round 1 (radius: 25)
[03:36:51 -165618.136981] FAST spr round 2 (radius: 25)
[03:37:26 -164990.714915] FAST spr round 3 (radius: 25)
[03:37:56 -164951.803687] FAST spr round 4 (radius: 25)
[03:38:21 -164948.967968] FAST spr round 5 (radius: 25)
[03:38:46 -164948.965572] Model parameter optimization (eps = 1.000000)
[03:38:51 -164946.834375] SLOW spr round 1 (radius: 5)
[03:39:32 -164885.302762] SLOW spr round 2 (radius: 5)
[03:40:10 -164884.343412] SLOW spr round 3 (radius: 5)
[03:40:46 -164882.927121] SLOW spr round 4 (radius: 5)
[03:41:22 -164881.660244] SLOW spr round 5 (radius: 5)
[03:41:58 -164881.660202] SLOW spr round 6 (radius: 10)
[03:42:35 -164881.660197] SLOW spr round 7 (radius: 15)
[03:43:33 -164881.660194] SLOW spr round 8 (radius: 20)
[03:44:53 -164881.660191] SLOW spr round 9 (radius: 25)
[03:46:23 -164881.660188] Model parameter optimization (eps = 0.100000)

[03:46:26] ML tree search #17, logLikelihood: -164881.597862

[03:46:26 -397402.005256] Initial branch length optimization
[03:46:28 -334738.782730] Model parameter optimization (eps = 10.000000)
[03:46:39 -333782.557450] AUTODETECT spr round 1 (radius: 5)
[03:47:07 -256613.439583] AUTODETECT spr round 2 (radius: 10)
[03:47:38 -207335.700851] AUTODETECT spr round 3 (radius: 15)
[03:48:15 -187166.172865] AUTODETECT spr round 4 (radius: 20)
[03:48:54 -181861.285697] AUTODETECT spr round 5 (radius: 25)
[03:49:36 -181663.508843] SPR radius for FAST iterations: 25 (autodetect)
[03:49:36 -181663.508843] Model parameter optimization (eps = 3.000000)
[03:49:46 -181559.837901] FAST spr round 1 (radius: 25)
[03:50:30 -165454.459750] FAST spr round 2 (radius: 25)
[03:51:03 -164957.479434] FAST spr round 3 (radius: 25)
[03:51:30 -164945.790095] FAST spr round 4 (radius: 25)
[03:51:55 -164943.813456] FAST spr round 5 (radius: 25)
[03:52:19 -164943.812984] Model parameter optimization (eps = 1.000000)
[03:52:26 -164934.473632] SLOW spr round 1 (radius: 5)
[03:53:07 -164888.068944] SLOW spr round 2 (radius: 5)
[03:53:45 -164880.791338] SLOW spr round 3 (radius: 5)
[03:54:22 -164879.726723] SLOW spr round 4 (radius: 5)
[03:54:58 -164879.725288] SLOW spr round 5 (radius: 10)
[03:55:35 -164879.725037] SLOW spr round 6 (radius: 15)
[03:56:33 -164879.724962] SLOW spr round 7 (radius: 20)
[03:57:51 -164879.724938] SLOW spr round 8 (radius: 25)
[03:59:26 -164879.724929] Model parameter optimization (eps = 0.100000)

[03:59:30] ML tree search #18, logLikelihood: -164879.466572

[03:59:30 -398951.798100] Initial branch length optimization
[03:59:31 -335607.712053] Model parameter optimization (eps = 10.000000)
[03:59:42 -334701.506935] AUTODETECT spr round 1 (radius: 5)
[04:00:11 -255280.515706] AUTODETECT spr round 2 (radius: 10)
[04:00:41 -206029.600659] AUTODETECT spr round 3 (radius: 15)
[04:01:15 -190097.158083] AUTODETECT spr round 4 (radius: 20)
[04:02:00 -180656.069454] AUTODETECT spr round 5 (radius: 25)
[04:02:48 -179883.424591] SPR radius for FAST iterations: 25 (autodetect)
[04:02:48 -179883.424591] Model parameter optimization (eps = 3.000000)
[04:02:58 -179736.440610] FAST spr round 1 (radius: 25)
[04:03:41 -165571.456761] FAST spr round 2 (radius: 25)
[04:04:14 -165008.962910] FAST spr round 3 (radius: 25)
[04:04:44 -164953.714270] FAST spr round 4 (radius: 25)
[04:05:11 -164939.655599] FAST spr round 5 (radius: 25)
[04:05:36 -164936.434228] FAST spr round 6 (radius: 25)
[04:06:00 -164936.433745] Model parameter optimization (eps = 1.000000)
[04:06:05 -164935.555759] SLOW spr round 1 (radius: 5)
[04:06:45 -164885.069370] SLOW spr round 2 (radius: 5)
[04:07:22 -164883.018376] SLOW spr round 3 (radius: 5)
[04:07:58 -164882.039785] SLOW spr round 4 (radius: 5)
[04:08:34 -164882.039558] SLOW spr round 5 (radius: 10)
[04:09:11 -164879.490823] SLOW spr round 6 (radius: 5)
[04:09:57 -164877.709454] SLOW spr round 7 (radius: 5)
[04:10:36 -164877.709447] SLOW spr round 8 (radius: 10)
[04:11:15 -164877.709444] SLOW spr round 9 (radius: 15)
[04:12:12 -164877.709440] SLOW spr round 10 (radius: 20)
[04:13:34 -164877.709437] SLOW spr round 11 (radius: 25)
[04:15:11 -164877.709434] Model parameter optimization (eps = 0.100000)

[04:15:16] ML tree search #19, logLikelihood: -164877.322225

[04:15:16 -396051.429745] Initial branch length optimization
[04:15:17 -330288.467158] Model parameter optimization (eps = 10.000000)
[04:15:33 -329478.118090] AUTODETECT spr round 1 (radius: 5)
[04:16:01 -253060.449840] AUTODETECT spr round 2 (radius: 10)
[04:16:34 -202429.454112] AUTODETECT spr round 3 (radius: 15)
[04:17:10 -179915.494607] AUTODETECT spr round 4 (radius: 20)
[04:17:54 -177762.261134] AUTODETECT spr round 5 (radius: 25)
[04:18:42 -177593.592894] SPR radius for FAST iterations: 25 (autodetect)
[04:18:42 -177593.592894] Model parameter optimization (eps = 3.000000)
[04:18:53 -177443.655920] FAST spr round 1 (radius: 25)
[04:19:34 -165710.979030] FAST spr round 2 (radius: 25)
[04:20:07 -164949.020014] FAST spr round 3 (radius: 25)
[04:20:35 -164924.818812] FAST spr round 4 (radius: 25)
[04:21:00 -164921.769131] FAST spr round 5 (radius: 25)
[04:21:25 -164921.768936] Model parameter optimization (eps = 1.000000)
[04:21:30 -164919.972595] SLOW spr round 1 (radius: 5)
[04:22:11 -164887.219066] SLOW spr round 2 (radius: 5)
[04:22:47 -164886.785252] SLOW spr round 3 (radius: 5)
[04:23:23 -164886.784027] SLOW spr round 4 (radius: 10)
[04:24:01 -164886.783757] SLOW spr round 5 (radius: 15)
[04:24:58 -164886.783695] SLOW spr round 6 (radius: 20)
[04:26:17 -164886.783679] SLOW spr round 7 (radius: 25)
[04:27:47 -164886.783671] Model parameter optimization (eps = 0.100000)

[04:27:50] ML tree search #20, logLikelihood: -164886.744284


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.121578,0.429365) (0.215197,0.451696) (0.351770,0.835749) (0.311456,1.787106) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -164867.950623

AIC score: 331713.901247 / AICc score: 2289933.901247 / BIC score: 335860.147749
Free parameters (model + branch lengths): 989

WARNING: Number of free parameters (K=989) is larger than alignment size (n=489).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P50747/3_mltree/P50747.raxml.log

Analysis started: 18-Jun-2021 12:15:08 / finished: 18-Jun-2021 16:42:59

Elapsed time: 16070.490 seconds