RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 08:27:20 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/2_msa/P50548_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/3_mltree/P50548.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626499640 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/2_msa/P50548_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 548 sites WARNING: Sequences tr_B4QJ96_B4QJ96_DROSI_7240 and tr_B4H6G2_B4H6G2_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_F4WQF6_F4WQF6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_E2BRF8_E2BRF8_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_A0A026WC02_A0A026WC02_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_A0A2A3EM72_A0A2A3EM72_APICC_94128 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and sp_P15062_ETS1B_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_G1R7C6_G1R7C6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_G1U6D8_G1U6D8_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_F1PRM7_F1PRM7_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A1D5QXL5_A0A1D5QXL5_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_H0YQQ4_H0YQQ4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_G7PPN8_G7PPN8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A2I2U2P4_A0A2I2U2P4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A0Q3S7C6_A0A0Q3S7C6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A087QPZ4_A0A087QPZ4_APTFO_9233 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_H2NFU7_H2NFU7_PONAB_9601 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_F6Y1Z2_F6Y1Z2_MONDO_13616 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_F7BWC3_F7BWC3_HORSE_9796 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and sp_P41156_ETS1_RAT_10116 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A287D693_A0A287D693_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and sp_P14921_ETS1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_G3WYS6_G3WYS6_SARHA_9305 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A0D9S4K5_A0A0D9S4K5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A1S3EMF7_A0A1S3EMF7_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A218UPA8_A0A218UPA8_9PASE_299123 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A226MT51_A0A226MT51_CALSU_9009 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A226PMC4_A0A226PMC4_COLVI_9014 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A2U3YA81_A0A2U3YA81_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A2Y9FV48_A0A2Y9FV48_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P13474_ETS1A_CHICK_9031 and tr_A0A384BVE0_A0A384BVE0_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_H0Z3M2_H0Z3M2_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_U3JRA3_U3JRA3_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_A0A093HXE3_A0A093HXE3_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_A0A091G2G1_A0A091G2G1_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_A0A218US03_A0A218US03_9PASE_299123 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_G1QY25_G1QY25_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_G3I053_G3I053_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_G3RHG5_G3RHG5_GORGO_9595 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A2J8M7W2_A0A2J8M7W2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and sp_P15036_ETS2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_G7MMS3_G7MMS3_MACMU_9544 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_F7IST1_F7IST1_CALJA_9483 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_G7P100_G7P100_MACFA_9541 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A096NJ28_A0A096NJ28_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A1S3G215_A0A1S3G215_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A1U7QH48_A0A1U7QH48_MESAU_10036 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A2K5LY71_A0A2K5LY71_CERAT_9531 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A2K6BCZ5_A0A2K6BCZ5_MACNE_9545 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A2K5XQL0_A0A2K5XQL0_MANLE_9568 are exactly identical! WARNING: Sequences sp_P15037_ETS2_MOUSE_10090 and tr_A0A2R9A0Z0_A0A2R9A0Z0_PANPA_9597 are exactly identical! WARNING: Sequences sp_P27577_ETS1_MOUSE_10090 and tr_G3U787_G3U787_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q8QZW2_FEV_MOUSE_10090 and sp_O70132_FEV_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YAQ3_M3YAQ3_MUSPF_9669 and tr_A0A2Y9KJV4_A0A2Y9KJV4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YAU2_M3YAU2_MUSPF_9669 and tr_G1Q8A7_G1Q8A7_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YAU2_M3YAU2_MUSPF_9669 and tr_W5PUA7_W5PUA7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YB64_M3YB64_MUSPF_9669 and tr_A0A286X8H2_A0A286X8H2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YB64_M3YB64_MUSPF_9669 and tr_L5KGX2_L5KGX2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YB64_M3YB64_MUSPF_9669 and tr_A0A2U3ZSJ0_A0A2U3ZSJ0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YB64_M3YB64_MUSPF_9669 and tr_A0A2Y9K4Q3_A0A2Y9K4Q3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P29774_ETS3_DROME_7227 and tr_A0A0P8YJ42_A0A0P8YJ42_DROAN_7217 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I2ZDB4_A0A2I2ZDB4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I3SPS3_A0A2I3SPS3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and sp_P11308_ERG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A1D5Q946_A0A1D5Q946_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_F7FUL7_F7FUL7_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_G7P101_G7P101_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I3MBH1_A0A2I3MBH1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A0D9R7Y1_A0A0D9R7Y1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K5P7D8_A0A2K5P7D8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K6B8P2_A0A2K6B8P2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K5YV43_A0A2K5YV43_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2R9AHQ3_A0A2R9AHQ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PDH9_G1PDH9_MYOLU_59463 and tr_F7DGG7_F7DGG7_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I2ZEQ5_A0A2I2ZEQ5_GORGO_9595 and tr_K7BJ65_K7BJ65_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZEQ5_A0A2I2ZEQ5_GORGO_9595 and sp_Q01543_FLI1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZEQ5_A0A2I2ZEQ5_GORGO_9595 and tr_A0A2R9C1G7_A0A2R9C1G7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A2I3RTZ5_A0A2I3RTZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and sp_Q99581_FEV_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_F1N1U5_F1N1U5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A337SSW5_A0A337SSW5_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A0D9R8A4_A0A0D9R8A4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A2K5NMZ5_A0A2K5NMZ5_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A2U3W3X5_A0A2U3W3X5_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A2Y9II67_A0A2Y9II67_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_U3J6M9_U3J6M9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A091K1W0_A0A091K1W0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A091X053_A0A091X053_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A087R965_A0A087R965_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A091X4U4_A0A091X4U4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A0A0AXT0_A0A0A0AXT0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A2I0MRV7_A0A2I0MRV7_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1NNZ0_G1NNZ0_MELGA_9103 and tr_A0A1V4J2N2_A0A1V4J2N2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0R3P7W9_A0A0R3P7W9_DROPS_46245 and tr_A0A1W4VAU5_A0A1W4VAU5_DROFC_30025 are exactly identical! WARNING: Sequences tr_F7DVT7_F7DVT7_ORNAN_9258 and tr_G7PXQ1_G7PXQ1_MACFA_9541 are exactly identical! WARNING: Sequences tr_W5PYQ4_W5PYQ4_SHEEP_9940 and sp_A1A4L6_ETS2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PYQ4_W5PYQ4_SHEEP_9940 and tr_F1MEX1_F1MEX1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PYQ4_W5PYQ4_SHEEP_9940 and tr_L5K9Z2_L5K9Z2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_W5PYQ4_W5PYQ4_SHEEP_9940 and tr_A0A091DAQ4_A0A091DAQ4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_W5PYQ4_W5PYQ4_SHEEP_9940 and tr_A0A2Y9E6Q1_A0A2Y9E6Q1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_D4AAH4_D4AAH4_RAT_10116 and tr_A0A1U7TPI9_A0A1U7TPI9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3ZGD3_M3ZGD3_XIPMA_8083 and tr_A0A087XAI4_A0A087XAI4_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A9R0_A0A088A9R0_APIME_7460 and tr_A0A0N0U3K3_A0A0N0U3K3_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A088A9R0_A0A088A9R0_APIME_7460 and tr_A0A151WWM0_A0A151WWM0_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A088A9R0_A0A088A9R0_APIME_7460 and tr_A0A154P8L8_A0A154P8L8_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A158NCR7_A0A158NCR7_ATTCE_12957 and tr_A0A151HZX9_A0A151HZX9_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NNI7_A0A158NNI7_ATTCE_12957 and tr_A0A195F6L5_A0A195F6L5_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3JCY0_I3JCY0_ORENI_8128 and tr_A0A2I4D9G2_A0A2I4D9G2_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_F7A492_F7A492_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A337RUF7_A0A337RUF7_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A091CMF6_A0A091CMF6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A0D9S4K8_A0A0D9S4K8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A2K5NXK6_A0A2K5NXK6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A2K6BK81_A0A2K6BK81_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A287CX65_A0A287CX65_ICTTR_43179 and tr_A0A2K6A8C4_A0A2K6A8C4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0K0JS75_A0A0K0JS75_BRUMA_6279 and tr_A0A0N4TN03_A0A0N4TN03_BRUPA_6280 are exactly identical! WARNING: Sequences tr_H9FR61_H9FR61_MACMU_9544 and tr_A0A096NQN3_A0A096NQN3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9FR61_H9FR61_MACMU_9544 and tr_A0A2K5LKY2_A0A2K5LKY2_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9FR61_H9FR61_MACMU_9544 and tr_A0A2K6BRH9_A0A2K6BRH9_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FR61_H9FR61_MACMU_9544 and tr_A0A2K5ZUC5_A0A2K5ZUC5_MANLE_9568 are exactly identical! WARNING: Sequences tr_H9Z692_H9Z692_MACMU_9544 and tr_A0A2K6CM50_A0A2K6CM50_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5SEX9_E5SEX9_TRISP_6334 and tr_A0A0V0SI12_A0A0V0SI12_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SEX9_E5SEX9_TRISP_6334 and tr_A0A0V0YNF1_A0A0V0YNF1_TRIPS_6337 are exactly identical! WARNING: Sequences tr_G3TC27_G3TC27_LOXAF_9785 and tr_A0A2Y9DRP2_A0A2Y9DRP2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2R8MR30_A0A2R8MR30_CALJA_9483 and tr_A0A287B4A1_A0A287B4A1_PIG_9823 are exactly identical! WARNING: Sequences tr_F1S6G9_F1S6G9_PIG_9823 and tr_G1L7C9_G1L7C9_AILME_9646 are exactly identical! WARNING: Sequences tr_F1S6G9_F1S6G9_PIG_9823 and tr_A0A2U3WS37_A0A2U3WS37_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1S6G9_F1S6G9_PIG_9823 and tr_A0A2Y9K6R1_A0A2Y9K6R1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1MDY2_G1MDY2_AILME_9646 and tr_A0A384D052_A0A384D052_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1MGF9_F1MGF9_BOVIN_9913 and sp_Q29RS8_FLI1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A0A0MW28_A0A0A0MW28_PAPAN_9555 and tr_A0A2K5LN64_A0A2K5LN64_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0A0MWP0_A0A0A0MWP0_PAPAN_9555 and tr_A0A2K6A435_A0A2K6A435_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0K0FPE3_A0A0K0FPE3_STRVS_75913 and tr_A0A0N5BLE0_A0A0N5BLE0_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151NGW2_A0A151NGW2_ALLMI_8496 and tr_A0A1U7RCT1_A0A1U7RCT1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JG86_A0A091JG86_EGRGA_188379 and tr_A0A087QPZ3_A0A087QPZ3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JG86_A0A091JG86_EGRGA_188379 and tr_A0A091VMC6_A0A091VMC6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093PEP7_A0A093PEP7_9PASS_328815 and tr_A0A091WLJ6_A0A091WLJ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093PEP7_A0A093PEP7_9PASS_328815 and tr_A0A093FY57_A0A093FY57_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091VWU0_A0A091VWU0_NIPNI_128390 and tr_A0A091VZ85_A0A091VZ85_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VWU0_A0A091VWU0_NIPNI_128390 and tr_A0A099YY97_A0A099YY97_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091VWU0_A0A091VWU0_NIPNI_128390 and tr_A0A091G4M2_A0A091G4M2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VWU0_A0A091VWU0_NIPNI_128390 and tr_A0A091I5L4_A0A091I5L4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0LGZ8_A0A2I0LGZ8_COLLI_8932 and tr_A0A1V4K617_A0A1V4K617_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LVG9_A0A2I0LVG9_COLLI_8932 and tr_A0A1V4J7J5_A0A1V4J7J5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1CFI1_A0A0V1CFI1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0WGX0_A0A0V0WGX0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0VV29_A0A0V0VV29_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1MPH9_A0A0V1MPH9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1NVP7_A0A0V1NVP7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1HS77_A0A0V1HS77_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0U670_A0A0V0U670_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V0X5B9_A0A0V0X5B9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V0VYT4_A0A0V0VYT4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V1LW60_A0A0V1LW60_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V1ADS2_A0A0V1ADS2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V1PPB7_A0A0V1PPB7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DIW3_A0A0V1DIW3_TRIBR_45882 and tr_A0A0V0UCV5_A0A0V0UCV5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A151X7I6_A0A151X7I6_9HYME_64791 and tr_A0A195BKJ0_A0A195BKJ0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A1S3LPC8_A0A1S3LPC8_SALSA_8030 and tr_A0A060WP12_A0A060WP12_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NUP9_A0A1S3NUP9_SALSA_8030 and tr_B5X490_B5X490_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NUP9_A0A1S3NUP9_SALSA_8030 and tr_A0A060WJR8_A0A060WJR8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NWT7_A0A1S3NWT7_SALSA_8030 and tr_A0A060VSP4_A0A060VSP4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3T0Q8_A0A1S3T0Q8_SALSA_8030 and tr_A0A060WRW1_A0A060WRW1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1UUM1_A0A1D1UUM1_RAMVA_947166 and tr_A0A1D1UZR2_A0A1D1UZR2_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1D1UUM1_A0A1D1UUM1_RAMVA_947166 and tr_A0A1D1V331_A0A1D1V331_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226MKX4_A0A226MKX4_CALSU_9009 and tr_A0A226NQJ9_A0A226NQJ9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSG9_A0A226MSG9_CALSU_9009 and tr_A0A226PMC0_A0A226PMC0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NPH5_A0A226NPH5_CALSU_9009 and tr_A0A226PCA1_A0A226PCA1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2L0F5_A0A2A2L0F5_9BILA_2018661 and tr_A0A2A2LTV4_A0A2A2LTV4_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0PP72_A0A2D0PP72_ICTPU_7998 and tr_W5UBB2_W5UBB2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QT54_A0A2D0QT54_ICTPU_7998 and tr_A0A2D0QUS3_A0A2D0QUS3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SRA2_A0A2D0SRA2_ICTPU_7998 and tr_A0A2D0SRA3_A0A2D0SRA3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R9A6A5_A0A2R9A6A5_PANPA_9597 and sp_A1YG91_ETV3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2U3V2M7_A0A2U3V2M7_TURTR_9739 and tr_A0A2Y9LG48_A0A2Y9LG48_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V2M7_A0A2U3V2M7_TURTR_9739 and tr_A0A2Y9EY45_A0A2Y9EY45_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V2M7_A0A2U3V2M7_TURTR_9739 and tr_A0A384A997_A0A384A997_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4AB19_A0A2U4AB19_TURTR_9739 and tr_A0A2Y9LFZ3_A0A2Y9LFZ3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AB19_A0A2U4AB19_TURTR_9739 and tr_A0A2Y9FBL5_A0A2Y9FBL5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4B5T5_A0A2U4B5T5_TURTR_9739 and tr_A0A2U4B5U0_A0A2U4B5U0_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U4BMK6_A0A2U4BMK6_TURTR_9739 and tr_A0A2Y9MY42_A0A2Y9MY42_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BVN0_A0A2U4BVN0_TURTR_9739 and tr_A0A2Y9LY20_A0A2Y9LY20_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BVN0_A0A2U4BVN0_TURTR_9739 and tr_A0A2Y9FU84_A0A2Y9FU84_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 181 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.reduced.phy Alignment comprises 1 partitions and 548 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 548 Gaps: 61.96 % Invariant sites: 2.01 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/3_mltree/P50548.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 137 / 10960 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -183883.161955 [00:00:00 -183883.161955] Initial branch length optimization [00:00:02 -89342.986446] Model parameter optimization (eps = 0.100000) [00:01:00] Tree #1, final logLikelihood: -89109.766606 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.074645,0.045808) (0.110330,0.160780) (0.279541,0.631851) (0.535485,1.498108) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P50548/4_raxmlng_ancestral/P50548.raxml.log Analysis started: 17-Jul-2021 08:27:20 / finished: 17-Jul-2021 08:28:25 Elapsed time: 65.358 seconds