RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 13:33:59 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/2_msa/P50219_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/3_mltree/P50219.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622802839 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/2_msa/P50219_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 401 sites WARNING: Sequences tr_B4QYW7_B4QYW7_DROSI_7240 and sp_P31264_HMPB_DROME_7227 are exactly identical! WARNING: Sequences tr_E1BZG3_E1BZG3_CHICK_9031 and tr_A0A226NEX8_A0A226NEX8_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BZG3_E1BZG3_CHICK_9031 and tr_A0A226PEX2_A0A226PEX2_COLVI_9014 are exactly identical! WARNING: Sequences sp_P14840_HXB4_CHICK_9031 and tr_A0A226N7W7_A0A226N7W7_CALSU_9009 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_M3Y081_M3Y081_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_G1QE21_G1QE21_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_E2R5W8_E2R5W8_CANLF_9615 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_F7DK44_F7DK44_HORSE_9796 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_I3MGW0_I3MGW0_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_B5SNP1_B5SNP1_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_A0A286XDF8_A0A286XDF8_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and sp_Q2HJ67_HXA5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_A0A3Q0E9U8_A0A3Q0E9U8_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_A0A2U3XNM2_A0A2U3XNM2_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P09021_HXA5_MOUSE_10090 and tr_A0A2Y9DMS4_A0A2Y9DMS4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q08624_HXC4_MOUSE_10090 and tr_A0A1U8BK99_A0A1U8BK99_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Y033_M3Y033_MUSPF_9669 and tr_A0A1S2ZZD4_A0A1S2ZZD4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Y044_M3Y044_MUSPF_9669 and tr_A0A2I2U5P9_A0A2I2U5P9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_I3N4H2_I3N4H2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_H0XVF3_H0XVF3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A287BEN5_A0A287BEN5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_D2HM48_D2HM48_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A4FUC1_A4FUC1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_L5L6B5_L5L6B5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2I2ULB3_A0A2I2ULB3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A1S3GIZ1_A0A1S3GIZ1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A1U7TDG8_A0A1U7TDG8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2U3UYC3_A0A2U3UYC3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2U3ZLK2_A0A2U3ZLK2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2U3XBD6_A0A2U3XBD6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2Y9DG31_A0A2Y9DG31_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2Y9KQ47_A0A2Y9KQ47_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2Y9N3K9_A0A2Y9N3K9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y389_M3Y389_MUSPF_9669 and tr_A0A2Y9FL63_A0A2Y9FL63_PHYCD_9755 are exactly identical! WARNING: Sequences tr_I6L4S4_I6L4S4_ORYLA_8090 and sp_Q3V5Z9_HXD3_ORYLA_8090 are exactly identical! WARNING: Sequences tr_G1RY83_G1RY83_NOMLE_61853 and tr_H2QUB4_H2QUB4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RY83_G1RY83_NOMLE_61853 and sp_O43364_HXA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2I2Z6R8_A0A2I2Z6R8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2I3SAW3_A0A2I3SAW3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and sp_P09017_HXC4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2R8MER4_A0A2R8MER4_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A096N4V5_A0A096N4V5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A0D9QZG7_A0A0D9QZG7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2K5MMI7_A0A2K5MMI7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2K6D2U9_A0A2K6D2U9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2K5XBC7_A0A2K5XBC7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S7G0_G1S7G0_NOMLE_61853 and tr_A0A2R9BS03_A0A2R9BS03_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PQ60_G1PQ60_MYOLU_59463 and tr_J9NWE8_J9NWE8_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2I2Z5T2_A0A2I2Z5T2_GORGO_9595 and tr_H2QJ13_H2QJ13_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z5T2_A0A2I2Z5T2_GORGO_9595 and sp_P31249_HXD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z5T2_A0A2I2Z5T2_GORGO_9595 and tr_A0A2R9AIR2_A0A2R9AIR2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QIH3_G3QIH3_GORGO_9595 and tr_H2QUB6_H2QUB6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QIH3_G3QIH3_GORGO_9595 and sp_P20719_HXA5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QIH3_G3QIH3_GORGO_9595 and tr_A9L940_A9L940_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QIH3_G3QIH3_GORGO_9595 and tr_A0A2K6DNI0_A0A2K6DNI0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QIH3_G3QIH3_GORGO_9595 and tr_A0A2R9CM15_A0A2R9CM15_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3RED6_A0A2I3RED6_PANTR_9598 and sp_P14651_HXB3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_I3MRE9_I3MRE9_ICTTR_43179 and tr_B5SNN8_B5SNN8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_E1BHR6_E1BHR6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A1S2ZEN1_A0A1S2ZEN1_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A1U7TJS6_A0A1U7TJS6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A2K6ALJ0_A0A2K6ALJ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A2K5ZMT2_A0A2K5ZMT2_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A2U3UYP7_A0A2U3UYP7_TURTR_9739 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A2U3XBP6_A0A2U3XBP6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_H0WN52_H0WN52_OTOGA_30611 and tr_A0A2Y9N0K2_A0A2Y9N0K2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A286XF93_A0A286XF93_CAVPO_10141 and tr_G5BIE0_G5BIE0_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5QLF7_A0A1D5QLF7_MACMU_9544 and tr_A0A0D9S3S1_A0A0D9S3S1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5QLF7_A0A1D5QLF7_MACMU_9544 and tr_A0A2K6BZL1_A0A2K6BZL1_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0YXF8_H0YXF8_TAEGU_59729 and tr_U3K4C9_U3K4C9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YXH4_H0YXH4_TAEGU_59729 and tr_U3K496_U3K496_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YXH4_H0YXH4_TAEGU_59729 and tr_A0A218VEA3_A0A218VEA3_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1SHT0_F1SHT0_PIG_9823 and tr_A0A2Y9JH87_A0A2Y9JH87_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1SHT0_F1SHT0_PIG_9823 and tr_A0A2Y9F0T6_A0A2Y9F0T6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_D2I1G0_D2I1G0_AILME_9646 and tr_A0A2U3WJQ4_A0A2U3WJQ4_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1MD21_F1MD21_BOVIN_9913 and sp_Q0VCS4_HXA2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3IN35_U3IN35_ANAPL_8839 and tr_A0A091ETP0_A0A091ETP0_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3IN35_U3IN35_ANAPL_8839 and tr_A0A0A0A0H8_A0A0A0A0H8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3IN35_U3IN35_ANAPL_8839 and tr_A0A2I0MIX5_A0A2I0MIX5_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3IN35_U3IN35_ANAPL_8839 and tr_A0A218V0N8_A0A218V0N8_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A044S5D2_A0A044S5D2_ONCVO_6282 and tr_A0A182EKL2_A0A182EKL2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A096N3X1_A0A096N3X1_PAPAN_9555 and tr_A0A2K5LB87_A0A2K5LB87_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N3X1_A0A096N3X1_PAPAN_9555 and tr_A0A2K5ZEF4_A0A2K5ZEF4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3NDR6_A0A2I3NDR6_PAPAN_9555 and tr_A0A2K5LMF8_A0A2K5LMF8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RP57_A0A0D9RP57_CHLSB_60711 and tr_A0A2K5M3M1_A0A2K5M3M1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RP57_A0A0D9RP57_CHLSB_60711 and tr_A0A2K6B6W7_A0A2K6B6W7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RP57_A0A0D9RP57_CHLSB_60711 and tr_A0A2K5XXE6_A0A2K5XXE6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091EHG0_A0A091EHG0_CORBR_85066 and tr_A0A093IGR2_A0A093IGR2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EHG0_A0A091EHG0_CORBR_85066 and tr_A0A091I239_A0A091I239_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093QG27_A0A093QG27_9PASS_328815 and tr_A0A091UIS8_A0A091UIS8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093QG27_A0A093QG27_9PASS_328815 and tr_A0A087R099_A0A087R099_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093QG27_A0A093QG27_9PASS_328815 and tr_A0A0A0AHN9_A0A0A0AHN9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093QG27_A0A093QG27_9PASS_328815 and tr_A0A093G7I0_A0A093G7I0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091V5Z5_A0A091V5Z5_NIPNI_128390 and tr_A0A091G401_A0A091G401_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091V5Z5_A0A091V5Z5_NIPNI_128390 and tr_A0A0A0AMB3_A0A0A0AMB3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091V5Z5_A0A091V5Z5_NIPNI_128390 and tr_A0A2I0MR15_A0A2I0MR15_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091VZ90_A0A091VZ90_NIPNI_128390 and tr_A0A091IBB2_A0A091IBB2_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0A0ALZ5_A0A0A0ALZ5_CHAVO_50402 and tr_A0A2I0MR12_A0A2I0MR12_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0V1D4Q6_A0A0V1D4Q6_TRIBR_45882 and tr_A0A0V1LGM3_A0A0V1LGM3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0VKK0_A0A0V0VKK0_9BILA_181606 and tr_A0A0V1PHR6_A0A0V1PHR6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0VKK0_A0A0V0VKK0_9BILA_181606 and tr_A0A0V0TYQ3_A0A0V0TYQ3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A195EVG0_A0A195EVG0_9HYME_34720 and tr_A0A195CQ88_A0A195CQ88_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3HKW6_A0A1S3HKW6_LINUN_7574 and tr_A0A1S3HML7_A0A1S3HML7_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3ILR2_A0A1S3ILR2_LINUN_7574 and tr_A0A1S3IMM9_A0A1S3IMM9_LINUN_7574 are exactly identical! WARNING: Sequences tr_B3SU75_B3SU75_SALSA_8030 and tr_A0A060W4J5_A0A060W4J5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B3SUF6_B3SUF6_SALSA_8030 and tr_A0A060X9P3_A0A060X9P3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B3TDC6_B3TDC6_SALSA_8030 and tr_A0A060W481_A0A060W481_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MFR8_A0A226MFR8_CALSU_9009 and tr_A0A226PN27_A0A226PN27_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3V1J6_A0A2U3V1J6_TURTR_9739 and tr_A0A2Y9SNQ6_A0A2Y9SNQ6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WYM6_A0A2U3WYM6_ODORO_9708 and tr_A0A2U3YYZ7_A0A2U3YYZ7_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 110 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.reduced.phy Alignment comprises 1 partitions and 401 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 401 Gaps: 57.84 % Invariant sites: 1.75 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/3_mltree/P50219.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 101 / 8080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -274097.407057 [00:00:00 -274097.407057] Initial branch length optimization [00:00:02 -115298.661229] Model parameter optimization (eps = 0.100000) [00:00:47] Tree #1, final logLikelihood: -115073.857077 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.089146,0.076688) (0.083004,0.144010) (0.253960,0.732387) (0.573890,1.385655) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P50219/4_raxmlng_ancestral/P50219.raxml.log Analysis started: 04-Jun-2021 13:33:59 / finished: 04-Jun-2021 13:34:50 Elapsed time: 50.769 seconds