RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:58:34 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/2_msa/P49773_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/3_mltree/P49773.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101914 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/2_msa/P49773_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 126 sites WARNING: Sequences tr_V7B1S6_V7B1S6_PHAVU_3885 and tr_A0A0L9UAM6_A0A0L9UAM6_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7B1S6_V7B1S6_PHAVU_3885 and tr_A0A1S3TGA5_A0A1S3TGA5_VIGRR_3916 are exactly identical! WARNING: Sequences tr_B4Q8K5_B4Q8K5_DROSI_7240 and tr_Q8STA5_Q8STA5_DROME_7227 are exactly identical! WARNING: Sequences tr_B4Q8K5_B4Q8K5_DROSI_7240 and tr_B4I2Q3_B4I2Q3_DROSE_7238 are exactly identical! WARNING: Sequences sp_P70349_HINT1_MOUSE_10090 and sp_P62959_HINT1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YJP0_M3YJP0_MUSPF_9669 and tr_G1MHD9_G1MHD9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YJP0_M3YJP0_MUSPF_9669 and tr_A0A337SM63_A0A337SM63_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YJP0_M3YJP0_MUSPF_9669 and tr_A0A2Y9IKX3_A0A2Y9IKX3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A0E1RYN0_A0A0E1RYN0_COCIM_246410 and tr_E9CVH4_E9CVH4_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1RYN0_A0A0E1RYN0_COCIM_246410 and tr_A0A0J7AWF0_A0A0J7AWF0_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QDL5_B6QDL5_TALMQ_441960 and tr_A0A093XND5_A0A093XND5_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3R6M3_G3R6M3_GORGO_9595 and tr_H2QX91_H2QX91_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R6M3_G3R6M3_GORGO_9595 and sp_Q9BX68_HINT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R6M3_G3R6M3_GORGO_9595 and tr_A0A2R8ZB15_A0A2R8ZB15_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R8F9_G3R8F9_GORGO_9595 and tr_H2QRF6_H2QRF6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R8F9_G3R8F9_GORGO_9595 and sp_P49773_HINT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R8F9_G3R8F9_GORGO_9595 and tr_A0A2R9BUQ1_A0A2R9BUQ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_F6R248_F6R248_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_F7H523_F7H523_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_A0A096MMR8_A0A096MMR8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_A0A0D9RNF6_A0A0D9RNF6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_A0A2K5MTV2_A0A2K5MTV2_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PGG1_H2PGG1_PONAB_9601 and tr_A0A2K5ZSQ8_A0A2K5ZSQ8_MANLE_9568 are exactly identical! WARNING: Sequences tr_C1GB68_C1GB68_PARBD_502780 and tr_C1H2M6_C1H2M6_PARBA_502779 are exactly identical! WARNING: Sequences tr_A0A2I3SKX6_A0A2I3SKX6_PANTR_9598 and tr_A0A2R8ZPJ6_A0A2R8ZPJ6_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5PQ45_W5PQ45_SHEEP_9940 and tr_I3M8V9_I3M8V9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_W5PQ45_W5PQ45_SHEEP_9940 and tr_A0A2U3UZX1_A0A2U3UZX1_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PQ45_W5PQ45_SHEEP_9940 and tr_A0A2Y9QKG8_A0A2Y9QKG8_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PQ45_W5PQ45_SHEEP_9940 and tr_A0A2Y9SVG8_A0A2Y9SVG8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F9FCG3_F9FCG3_FUSOF_660025 and tr_W7MRT0_W7MRT0_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FCG3_F9FCG3_FUSOF_660025 and tr_X0D3Y0_X0D3Y0_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_K4D318_K4D318_SOLLC_4081 and tr_M1CQE7_M1CQE7_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A0E0GLQ8_A0A0E0GLQ8_ORYNI_4536 and tr_A0A0D3FHW4_A0A0D3FHW4_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GWR8_A0A0E0GWR8_ORYNI_4536 and tr_B8B162_B8B162_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0J103_A0A0E0J103_ORYNI_4536 and tr_A0A0E0F4V8_A0A0E0F4V8_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0J103_A0A0E0J103_ORYNI_4536 and tr_A0A0D3HKR5_A0A0D3HKR5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0K0J016_A0A0K0J016_BRUMA_6279 and tr_A0A0R3QWM9_A0A0R3QWM9_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2QLN7_A2QLN7_ASPNC_425011 and tr_A0A318ZZ97_A0A318ZZ97_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7GRL0_F7GRL0_MACMU_9544 and tr_G7PRZ2_G7PRZ2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GRL0_F7GRL0_MACMU_9544 and tr_A0A096P167_A0A096P167_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GRL0_F7GRL0_MACMU_9544 and tr_A0A0D9RE08_A0A0D9RE08_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GRL0_F7GRL0_MACMU_9544 and tr_A0A2K5M1Y3_A0A2K5M1Y3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GRL0_F7GRL0_MACMU_9544 and tr_A0A2K6E4E6_A0A2K6E4E6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7XLZ8_G7XLZ8_ASPKW_1033177 and tr_A0A100IQ12_A0A100IQ12_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XLZ8_G7XLZ8_ASPKW_1033177 and tr_A0A1L9NQD8_A0A1L9NQD8_ASPTU_767770 are exactly identical! WARNING: Sequences tr_I1NSM0_I1NSM0_ORYGL_4538 and tr_A0A0E0N3Z1_A0A0E0N3Z1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_E6R2G1_E6R2G1_CRYGW_367775 and tr_A0A095CBX4_A0A095CBX4_CRYGR_294750 are exactly identical! WARNING: Sequences tr_A0A0E0Q1D3_A0A0E0Q1D3_ORYRU_4529 and tr_A0A0E0AD02_A0A0E0AD02_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_F9XMS9_F9XMS9_ZYMTI_336722 and tr_A0A1X7S638_A0A1X7S638_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A1B8XSK6_A0A1B8XSK6_XENTR_8364 and tr_F6WAI4_F6WAI4_XENTR_8364 are exactly identical! WARNING: Sequences tr_F7DXD5_F7DXD5_CALJA_9483 and tr_F7HV89_F7HV89_CALJA_9483 are exactly identical! WARNING: Sequences tr_B3RU19_B3RU19_TRIAD_10228 and tr_A0A369RWG8_A0A369RWG8_9METZ_287889 are exactly identical! WARNING: Sequences tr_L2FH70_L2FH70_COLFN_1213859 and tr_T0KRP9_T0KRP9_COLGC_1237896 are exactly identical! WARNING: Sequences tr_M4CSQ7_M4CSQ7_BRARP_51351 and tr_A0A078C5F6_A0A078C5F6_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4DDX0_M4DDX0_BRARP_51351 and tr_A0A078JP05_A0A078JP05_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4DDX0_M4DDX0_BRARP_51351 and tr_A0A0D3BXI8_A0A0D3BXI8_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4DEI3_M4DEI3_BRARP_51351 and tr_A0A0D3D5M4_A0A0D3D5M4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M7Z528_M7Z528_TRIUA_4572 and tr_W5E2R7_W5E2R7_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M2VBZ8_M2VBZ8_COCH5_701091 and tr_W6ZRP2_W6ZRP2_COCMI_930090 are exactly identical! WARNING: Sequences tr_U5HAU7_U5HAU7_USTV1_683840 and tr_A0A2X0MFN2_A0A2X0MFN2_9BASI_796604 are exactly identical! WARNING: Sequences tr_A0A015LCT8_A0A015LCT8_9GLOM_1432141 and tr_A0A2I1G516_A0A2I1G516_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015LCT8_A0A015LCT8_9GLOM_1432141 and tr_U9TE69_U9TE69_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015LX55_A0A015LX55_9GLOM_1432141 and tr_A0A2I1DU41_A0A2I1DU41_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044SYP3_A0A044SYP3_ONCVO_6282 and tr_A0A182E6L8_A0A182E6L8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067EQG0_A0A067EQG0_CITSI_2711 and tr_V4UVF6_V4UVF6_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A094EVS5_A0A094EVS5_9PEZI_1420912 and tr_A0A1B8GFP6_A0A1B8GFP6_9PEZI_342668 are exactly identical! WARNING: Sequences tr_V4W718_V4W718_9ROSI_85681 and tr_A0A2H5P9T0_A0A2H5P9T0_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067CTK1_A0A067CTK1_SAPPC_695850 and tr_T0SHC6_T0SHC6_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2SUY7_A0A0D2SUY7_GOSRA_29730 and tr_A0A1U8LLD6_A0A1U8LLD6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0K8LJE7_A0A0K8LJE7_9EURO_91492 and tr_A0A2I1CBS8_A0A2I1CBS8_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0W8CHU3_A0A0W8CHU3_PHYNI_4790 and tr_W2M2E2_W2M2E2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A091J9M4_A0A091J9M4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A093Q230_A0A093Q230_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A091VWQ8_A0A091VWQ8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A087RHD4_A0A087RHD4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A0A0A1T4_A0A0A0A1T4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F5C3_A0A091F5C3_CORBR_85066 and tr_A0A093GMU5_A0A093GMU5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091W9M1_A0A091W9M1_OPIHO_30419 and tr_A0A091GJJ3_A0A091GJJ3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0V1CNG5_A0A0V1CNG5_TRIBR_45882 and tr_A0A0V1NJS4_A0A0V1NJS4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0VJ97_A0A0V0VJ97_9BILA_181606 and tr_A0A0V0TX15_A0A0V0TX15_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MNW3_A0A0V1MNW3_9BILA_268474 and tr_A0A0V1HDM4_A0A0V1HDM4_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A164QB19_A0A164QB19_9HOMO_1314777 and tr_A0A166B9E0_A0A166B9E0_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S4BVU4_A0A1S4BVU4_TOBAC_4097 and tr_A0A1U7X8I9_A0A1U7X8I9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CGT7_A0A1S4CGT7_TOBAC_4097 and tr_A0A1J6I3V4_A0A1J6I3V4_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4CGT7_A0A1S4CGT7_TOBAC_4097 and tr_A0A1U7WZA0_A0A1U7WZA0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1V8V7Q9_A0A1V8V7Q9_9PEZI_1974281 and tr_A0A1V8T1S2_A0A1V8T1S2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A226N797_A0A226N797_CALSU_9009 and tr_A0A226PU58_A0A226PU58_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2G2YNT7_A0A2G2YNT7_CAPAN_4072 and tr_A0A2G3ARB4_A0A2G3ARB4_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2P5CR60_A0A2P5CR60_TREOI_63057 and tr_A0A2P5CZ84_A0A2P5CZ84_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2U3V3B1_A0A2U3V3B1_TURTR_9739 and tr_A0A2Y9PEX1_A0A2Y9PEX1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V3B1_A0A2U3V3B1_TURTR_9739 and tr_A0A2Y9FIA6_A0A2Y9FIA6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A319CIC2_A0A319CIC2_9EURO_1448315 and tr_A0A2V5I843_A0A2V5I843_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319CIC2_A0A319CIC2_9EURO_1448315 and tr_A0A2V5HAF6_A0A2V5HAF6_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 93 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.reduced.phy Alignment comprises 1 partitions and 126 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 126 Gaps: 8.89 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/3_mltree/P49773.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 32 / 2560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -57654.322418 [00:00:00 -57654.322418] Initial branch length optimization [00:00:00 -57486.736239] Model parameter optimization (eps = 0.100000) [00:00:20] Tree #1, final logLikelihood: -57259.956856 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.182575,0.371080) (0.317841,0.534417) (0.281209,1.069518) (0.218374,2.113952) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49773/4_raxmlng_ancestral/P49773.raxml.log Analysis started: 12-Jul-2021 17:58:34 / finished: 12-Jul-2021 17:58:55 Elapsed time: 21.755 seconds Consumed energy: 1.060 Wh