RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 01-Jul-2021 22:52:02 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/2_msa/P49641_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/2_msa/P49641_trimmed_msa.fasta
[00:00:00] Loaded alignment with 655 taxa and 57 sites

WARNING: Sequences tr_B4QWM5_B4QWM5_DROSI_7240 and tr_B4HKD8_B4HKD8_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QXU7_B4QXU7_DROSI_7240 and tr_Q9VF33_Q9VF33_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QXU7_B4QXU7_DROSI_7240 and tr_B4HLW4_B4HLW4_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QXU7_B4QXU7_DROSI_7240 and tr_A0A1W4VQH8_A0A1W4VQH8_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_G1NE21_G1NE21_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_U3IC46_U3IC46_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A091E5L4_A0A091E5L4_CORBR_85066 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A093QDU2_A0A093QDU2_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A091VJ45_A0A091VJ45_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A087R482_A0A087R482_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A093I4D8_A0A093I4D8_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A091GI56_A0A091GI56_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A2I0LHD5_A0A2I0LHD5_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A1V4JDC4_A0A1V4JDC4_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A218UER7_A0A218UER7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A1D5PJD4_A0A1D5PJD4_CHICK_9031 and tr_A0A226PDC1_A0A226PDC1_COLVI_9014 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_G1RNL6_G1RNL6_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_G1SH08_G1SH08_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A0G2JWG1_A0A0G2JWG1_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_H0WSQ0_H0WSQ0_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_H9H318_H9H318_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_U3FGQ7_U3FGQ7_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_G7P9G9_G7P9G9_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A2I3MSV8_A0A2I3MSV8_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A0D9RWW5_A0A0D9RWW5_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A2K5NNY1_A0A2K5NNY1_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A2K6CEH1_A0A2K6CEH1_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A2K6A683_A0A2K6A683_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q8BRK9_MA2A2_MOUSE_10090 and tr_A0A2Y9QIV1_A0A2Y9QIV1_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_M3YMC4_M3YMC4_MUSPF_9669 and tr_A0A2Y9JLJ8_A0A2Y9JLJ8_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YW72_M3YW72_MUSPF_9669 and tr_A0A2Y9KB96_A0A2Y9KB96_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_B4JFC9_B4JFC9_DROGR_7222 and tr_B4M4C9_B4M4C9_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4JFC9_B4JFC9_DROGR_7222 and tr_B4K676_B4K676_DROMO_7230 are exactly identical!
WARNING: Sequences tr_B4JFC9_B4JFC9_DROGR_7222 and tr_A0A0M4EHK4_A0A0M4EHK4_DROBS_30019 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_G3QGR6_G3QGR6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_H2PG85_H2PG85_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_H2R5G6_H2R5G6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and sp_Q16706_MA2A1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_F7EHM7_F7EHM7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_G7P817_G7P817_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A096N4V0_A0A096N4V0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A0D9RRG0_A0A0D9RRG0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A2K5N6Z0_A0A2K5N6Z0_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A2K6E493_A0A2K6E493_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A2K5XGY8_A0A2K5XGY8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1RKL8_G1RKL8_NOMLE_61853 and tr_A0A2R9BN84_A0A2R9BN84_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G3H559_G3H559_CRIGR_10029 and tr_A0A1U7QQP6_A0A1U7QQP6_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G3IG18_G3IG18_CRIGR_10029 and tr_A0A3Q0DR79_A0A3Q0DR79_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3IG18_G3IG18_CRIGR_10029 and tr_A0A3Q0D238_A0A3Q0D238_MESAU_10036 are exactly identical!
WARNING: Sequences tr_D8SD28_D8SD28_SELML_88036 and tr_D8SH82_D8SH82_SELML_88036 are exactly identical!
WARNING: Sequences tr_G3QYR7_G3QYR7_GORGO_9595 and tr_H2QA36_H2QA36_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3QYR7_G3QYR7_GORGO_9595 and sp_P49641_MA2A2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QYR7_G3QYR7_GORGO_9595 and tr_A0A2R9AEF2_A0A2R9AEF2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_Q29BM2_Q29BM2_DROPS_46245 and tr_B4GP61_B4GP61_DROPE_7234 are exactly identical!
WARNING: Sequences tr_W5PSQ8_W5PSQ8_SHEEP_9940 and tr_E1BGJ4_E1BGJ4_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PSQ8_W5PSQ8_SHEEP_9940 and tr_A0A2U4C733_A0A2U4C733_TURTR_9739 are exactly identical!
WARNING: Sequences tr_W5PSQ8_W5PSQ8_SHEEP_9940 and tr_A0A2Y9MR63_A0A2Y9MR63_DELLE_9749 are exactly identical!
WARNING: Sequences tr_W5PSQ8_W5PSQ8_SHEEP_9940 and tr_A0A2Y9ET46_A0A2Y9ET46_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_W5PSQ8_W5PSQ8_SHEEP_9940 and tr_A0A384B4Z8_A0A384B4Z8_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3ZF75_M3ZF75_XIPMA_8083 and tr_A0A087Y8S8_A0A087Y8S8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_K3XUW2_K3XUW2_SETIT_4555 and tr_A0A2T7E162_A0A2T7E162_9POAL_1504633 are exactly identical!
WARNING: Sequences tr_A0A087ZYA7_A0A087ZYA7_APIME_7460 and tr_A0A0L7QSR0_A0A0L7QSR0_9HYME_597456 are exactly identical!
WARNING: Sequences tr_A0A087ZYA7_A0A087ZYA7_APIME_7460 and tr_A0A2A3EFY6_A0A2A3EFY6_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A087ZZQ3_A0A087ZZQ3_APIME_7460 and tr_A0A2A3EQ80_A0A2A3EQ80_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NN37_A0A158NN37_ATTCE_12957 and tr_A0A151WLE3_A0A151WLE3_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NN37_A0A158NN37_ATTCE_12957 and tr_A0A151J3Q1_A0A151J3Q1_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NN37_A0A158NN37_ATTCE_12957 and tr_A0A195BUS9_A0A195BUS9_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NN37_A0A158NN37_ATTCE_12957 and tr_A0A195FBG3_A0A195FBG3_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NN37_A0A158NN37_ATTCE_12957 and tr_A0A195C452_A0A195C452_9HYME_456900 are exactly identical!
WARNING: Sequences tr_A0A158NSN6_A0A158NSN6_ATTCE_12957 and tr_A0A151I6B5_A0A151I6B5_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NSN6_A0A158NSN6_ATTCE_12957 and tr_A0A195EXK8_A0A195EXK8_9HYME_34720 are exactly identical!
WARNING: Sequences tr_H0VA31_H0VA31_CAVPO_10141 and tr_G5B435_G5B435_HETGA_10181 are exactly identical!
WARNING: Sequences tr_H0VA31_H0VA31_CAVPO_10141 and tr_A0A091DCJ3_A0A091DCJ3_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_J3MCV9_J3MCV9_ORYBR_4533 and tr_A0A0E0L9X2_A0A0E0L9X2_ORYPU_4537 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_B8B4H4_B8B4H4_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_I1Q161_I1Q161_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_A0A0E0DZT1_A0A0E0DZT1_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_A0A0E0PVQ5_A0A0E0PVQ5_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_A0A0D3GEU2_A0A0D3GEU2_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0HNE5_A0A0E0HNE5_ORYNI_4536 and tr_A0A0E0A7H5_A0A0E0A7H5_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0K0JDL3_A0A0K0JDL3_BRUMA_6279 and tr_A0A0N4TL48_A0A0N4TL48_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V0RLR1_A0A0V0RLR1_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V1CSW9_A0A0V1CSW9_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V0WBE4_A0A0V0WBE4_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V0UMY7_A0A0V0UMY7_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V1KQT1_A0A0V1KQT1_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V0ZW10_A0A0V0ZW10_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V1P1H5_A0A0V1P1H5_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5SMC5_E5SMC5_TRISP_6334 and tr_A0A0V0T9P8_A0A0V0T9P8_9BILA_144512 are exactly identical!
WARNING: Sequences tr_H0YRU7_H0YRU7_TAEGU_59729 and tr_A0A091EF23_A0A091EF23_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0YRU7_H0YRU7_TAEGU_59729 and tr_A0A218UUA2_A0A218UUA2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E3LVI0_E3LVI0_CAERE_31234 and tr_A0A261C7G7_A0A261C7G7_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_A8Y462_A8Y462_CAEBR_6238 and tr_A0A2G5TGR4_A0A2G5TGR4_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_D2HDB2_D2HDB2_AILME_9646 and tr_M3WBE5_M3WBE5_FELCA_9685 are exactly identical!
WARNING: Sequences tr_D2HDB2_D2HDB2_AILME_9646 and tr_A0A2U3W0N1_A0A2U3W0N1_ODORO_9708 are exactly identical!
WARNING: Sequences tr_D2HDB2_D2HDB2_AILME_9646 and tr_A0A2U3XBL2_A0A2U3XBL2_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_D2HDB2_D2HDB2_AILME_9646 and tr_A0A384D7U6_A0A384D7U6_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1M5B7_G1M5B7_AILME_9646 and tr_A0A2U3VSQ9_A0A2U3VSQ9_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G1M5B7_G1M5B7_AILME_9646 and tr_A0A2U3Z666_A0A2U3Z666_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_G1M5B7_G1M5B7_AILME_9646 and tr_A0A384BVA3_A0A384BVA3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_B3S7R6_B3S7R6_TRIAD_10228 and tr_A0A369SLZ9_A0A369SLZ9_9METZ_287889 are exactly identical!
WARNING: Sequences tr_A0A287W5Z3_A0A287W5Z3_HORVV_112509 and tr_M7ZK00_M7ZK00_TRIUA_4572 are exactly identical!
WARNING: Sequences tr_A0A287W5Z3_A0A287W5Z3_HORVV_112509 and tr_A0A3B6RHJ2_A0A3B6RHJ2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M4CPY6_M4CPY6_BRARP_51351 and tr_A0A0D3B169_A0A0D3B169_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M4E3Z3_M4E3Z3_BRARP_51351 and tr_V4LCM8_V4LCM8_EUTSA_72664 are exactly identical!
WARNING: Sequences tr_M4E3Z3_M4E3Z3_BRARP_51351 and tr_A0A0D3AJ44_A0A0D3AJ44_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_T1EKE3_T1EKE3_HELRO_6412 and tr_T1FXM3_T1FXM3_HELRO_6412 are exactly identical!
WARNING: Sequences tr_U3JDK3_U3JDK3_FICAL_59894 and tr_U3IVC1_U3IVC1_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A3B6SBJ5_A0A3B6SBJ5_WHEAT_4565 and tr_A0A3B6TNX2_A0A3B6TNX2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A067FG37_A0A067FG37_CITSI_2711 and tr_V4UBR9_V4UBR9_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FG37_A0A067FG37_CITSI_2711 and tr_A0A2H5P2V0_A0A2H5P2V0_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0A0LFD6_A0A0A0LFD6_CUCSA_3659 and tr_A0A1S3B8V9_A0A1S3B8V9_CUCME_3656 are exactly identical!
WARNING: Sequences tr_U4UPH2_U4UPH2_DENPD_77166 and tr_U4UZT6_U4UZT6_DENPD_77166 are exactly identical!
WARNING: Sequences tr_A0A0D2NKU8_A0A0D2NKU8_GOSRA_29730 and tr_A0A1U8I3N8_A0A1U8I3N8_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0R3WZR5_A0A0R3WZR5_HYDTA_6205 and tr_A0A158RA02_A0A158RA02_TAEAS_60517 are exactly identical!
WARNING: Sequences tr_A0A151NYE5_A0A151NYE5_ALLMI_8496 and tr_A0A3Q0HCQ6_A0A3Q0HCQ6_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A183H6J4_A0A183H6J4_9BILA_387005 and tr_A0A182E4G1_A0A182E4G1_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A087RBL1_A0A087RBL1_APTFO_9233 and tr_A0A091G9B6_A0A091G9B6_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A0V0XFY1_A0A0V0XFY1_TRIPS_6337 and tr_A0A0V1M3Z9_A0A0V1M3Z9_9BILA_268474 are exactly identical!
WARNING: Sequences tr_A0A0V0XFY1_A0A0V0XFY1_TRIPS_6337 and tr_A0A0V1HSN2_A0A0V1HSN2_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A151WJA6_A0A151WJA6_9HYME_64791 and tr_A0A195DUT2_A0A195DUT2_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A1S3H901_A0A1S3H901_LINUN_7574 and tr_A0A1S3IQZ5_A0A1S3IQZ5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1U8FQH0_A0A1U8FQH0_CAPAN_4072 and tr_A0A2G3D9D5_A0A2G3D9D5_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G5CGJ2_A0A2G5CGJ2_AQUCA_218851 and tr_A0A2G5D473_A0A2G5D473_AQUCA_218851 are exactly identical!
WARNING: Sequences tr_A0A2P5DRV6_A0A2P5DRV6_TREOI_63057 and tr_A0A2P5CEF7_A0A2P5CEF7_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2U4BT22_A0A2U4BT22_TURTR_9739 and tr_A0A2Y9PV48_A0A2Y9PV48_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BT22_A0A2U4BT22_TURTR_9739 and tr_A0A2Y9EY30_A0A2Y9EY30_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4BT22_A0A2U4BT22_TURTR_9739 and tr_A0A384AXK5_A0A384AXK5_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 128

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.reduced.phy

Alignment comprises 1 partitions and 57 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 57 / 57
Gaps: 6.27 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 655 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 57 / 4560
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -56732.803006] Initial branch length optimization
[00:00:00 -46740.017226] Model parameter optimization (eps = 10.000000)
[00:00:14 -46425.802926] AUTODETECT spr round 1 (radius: 5)
[00:00:50 -35575.163382] AUTODETECT spr round 2 (radius: 10)
[00:01:31 -28671.686035] AUTODETECT spr round 3 (radius: 15)
[00:02:18 -24359.467356] AUTODETECT spr round 4 (radius: 20)
[00:03:04 -22461.848549] AUTODETECT spr round 5 (radius: 25)
[00:03:57 -21879.290293] SPR radius for FAST iterations: 25 (autodetect)
[00:03:57 -21879.290293] Model parameter optimization (eps = 3.000000)
[00:04:04 -21871.745297] FAST spr round 1 (radius: 25)
[00:04:49 -18732.477708] FAST spr round 2 (radius: 25)
[00:05:25 -18525.174937] FAST spr round 3 (radius: 25)
[00:06:01 -18501.576711] FAST spr round 4 (radius: 25)
[00:06:34 -18493.260025] FAST spr round 5 (radius: 25)
[00:07:07 -18487.894456] FAST spr round 6 (radius: 25)
[00:07:39 -18486.769026] FAST spr round 7 (radius: 25)
[00:08:11 -18486.768192] Model parameter optimization (eps = 1.000000)
[00:08:19 -18484.882945] SLOW spr round 1 (radius: 5)
[00:08:56 -18479.713497] SLOW spr round 2 (radius: 5)
[00:09:34 -18477.059645] SLOW spr round 3 (radius: 5)
[00:10:11 -18477.059493] SLOW spr round 4 (radius: 10)
[00:10:48 -18477.049018] SLOW spr round 5 (radius: 15)
[00:11:46 -18468.193708] SLOW spr round 6 (radius: 5)
[00:12:34 -18377.452596] SLOW spr round 7 (radius: 5)
[00:13:16 -18370.960512] SLOW spr round 8 (radius: 5)
[00:13:54 -18369.688406] SLOW spr round 9 (radius: 5)
[00:14:32 -18369.688240] SLOW spr round 10 (radius: 10)
[00:15:12 -18366.931077] SLOW spr round 11 (radius: 5)
[00:15:59 -18365.780440] SLOW spr round 12 (radius: 5)
[00:16:41 -18365.387791] SLOW spr round 13 (radius: 5)
[00:17:19 -18365.387058] SLOW spr round 14 (radius: 10)
[00:17:57 -18365.387039] SLOW spr round 15 (radius: 15)
[00:18:50 -18365.126759] SLOW spr round 16 (radius: 5)
[00:19:36 -18365.126694] SLOW spr round 17 (radius: 10)
[00:20:18 -18362.432587] SLOW spr round 18 (radius: 5)
[00:21:02 -18358.516604] SLOW spr round 19 (radius: 5)
[00:21:44 -18352.641763] SLOW spr round 20 (radius: 5)
[00:22:23 -18352.639100] SLOW spr round 21 (radius: 10)
[00:23:03 -18351.713506] SLOW spr round 22 (radius: 5)
[00:23:49 -18350.694663] SLOW spr round 23 (radius: 5)
[00:24:31 -18350.504127] SLOW spr round 24 (radius: 5)
[00:25:08 -18350.503427] SLOW spr round 25 (radius: 10)
[00:25:46 -18350.503146] SLOW spr round 26 (radius: 15)
[00:26:37 -18350.503032] SLOW spr round 27 (radius: 20)
[00:27:40 -18341.645048] SLOW spr round 28 (radius: 5)
[00:28:29 -18338.191778] SLOW spr round 29 (radius: 5)
[00:29:12 -18338.141849] SLOW spr round 30 (radius: 10)
[00:29:52 -18337.370307] SLOW spr round 31 (radius: 5)
[00:30:38 -18337.359405] SLOW spr round 32 (radius: 10)
[00:31:19 -18337.359397] SLOW spr round 33 (radius: 15)
[00:32:10 -18337.359396] SLOW spr round 34 (radius: 20)
[00:33:13 -18337.359394] SLOW spr round 35 (radius: 25)
[00:34:27 -18336.467705] SLOW spr round 36 (radius: 5)
[00:35:14 -18336.105393] SLOW spr round 37 (radius: 5)
[00:35:57 -18336.104852] SLOW spr round 38 (radius: 10)
[00:36:36 -18336.104681] SLOW spr round 39 (radius: 15)
[00:37:29 -18334.753762] SLOW spr round 40 (radius: 5)
[00:38:17 -18334.568038] SLOW spr round 41 (radius: 5)
[00:38:59 -18334.567879] SLOW spr round 42 (radius: 10)
[00:39:38 -18334.567876] SLOW spr round 43 (radius: 15)
[00:40:29 -18334.567874] SLOW spr round 44 (radius: 20)
[00:41:33 -18310.710698] SLOW spr round 45 (radius: 5)
[00:42:22 -18306.659323] SLOW spr round 46 (radius: 5)
[00:43:03 -18306.659246] SLOW spr round 47 (radius: 10)
[00:43:42 -18306.659244] SLOW spr round 48 (radius: 15)
[00:44:34 -18306.659242] SLOW spr round 49 (radius: 20)
[00:45:40 -18306.572597] SLOW spr round 50 (radius: 25)
[00:46:57 -18306.572581] Model parameter optimization (eps = 0.100000)

[00:47:09] ML tree search #1, logLikelihood: -18302.552047

[00:47:09 -56893.575315] Initial branch length optimization
[00:47:10 -46947.156224] Model parameter optimization (eps = 10.000000)
[00:47:21 -46647.383903] AUTODETECT spr round 1 (radius: 5)
[00:47:55 -34485.220103] AUTODETECT spr round 2 (radius: 10)
[00:48:36 -27601.642846] AUTODETECT spr round 3 (radius: 15)
[00:49:19 -23854.982116] AUTODETECT spr round 4 (radius: 20)
[00:50:08 -21863.899979] AUTODETECT spr round 5 (radius: 25)
[00:51:06 -21236.125125] SPR radius for FAST iterations: 25 (autodetect)
[00:51:06 -21236.125125] Model parameter optimization (eps = 3.000000)
[00:51:20 -21211.199806] FAST spr round 1 (radius: 25)
[00:52:06 -18840.675353] FAST spr round 2 (radius: 25)
[00:52:43 -18652.551204] FAST spr round 3 (radius: 25)
[00:53:19 -18635.440922] FAST spr round 4 (radius: 25)
[00:53:51 -18632.248596] FAST spr round 5 (radius: 25)
[00:54:23 -18631.540577] FAST spr round 6 (radius: 25)
[00:54:53 -18631.219446] FAST spr round 7 (radius: 25)
[00:55:23 -18631.219263] Model parameter optimization (eps = 1.000000)
[00:55:34 -18628.141176] SLOW spr round 1 (radius: 5)
[00:56:11 -18619.095210] SLOW spr round 2 (radius: 5)
[00:56:49 -18617.489132] SLOW spr round 3 (radius: 5)
[00:57:27 -18617.462233] SLOW spr round 4 (radius: 10)
[00:58:05 -18614.914999] SLOW spr round 5 (radius: 5)
[00:58:53 -18614.836738] SLOW spr round 6 (radius: 10)
[00:59:36 -18614.232579] SLOW spr round 7 (radius: 5)
[01:00:23 -18613.201970] SLOW spr round 8 (radius: 5)
[01:01:05 -18613.199432] SLOW spr round 9 (radius: 10)
[01:01:45 -18613.199069] SLOW spr round 10 (radius: 15)
[01:02:35 -18612.288306] SLOW spr round 11 (radius: 5)
[01:03:24 -18612.191765] SLOW spr round 12 (radius: 10)
[01:04:06 -18612.190657] SLOW spr round 13 (radius: 15)
[01:04:55 -18612.190455] SLOW spr round 14 (radius: 20)
[01:06:01 -18590.736094] SLOW spr round 15 (radius: 5)
[01:06:54 -18563.619554] SLOW spr round 16 (radius: 5)
[01:07:39 -18563.591108] SLOW spr round 17 (radius: 10)
[01:08:20 -18563.590867] SLOW spr round 18 (radius: 15)
[01:09:11 -18563.590823] SLOW spr round 19 (radius: 20)
[01:10:14 -18562.626682] SLOW spr round 20 (radius: 5)
[01:11:03 -18562.626591] SLOW spr round 21 (radius: 10)
[01:11:46 -18562.626586] SLOW spr round 22 (radius: 15)
[01:12:34 -18562.626586] SLOW spr round 23 (radius: 20)
[01:13:39 -18562.626586] SLOW spr round 24 (radius: 25)
[01:14:51 -18562.408244] SLOW spr round 25 (radius: 5)
[01:15:42 -18562.367807] SLOW spr round 26 (radius: 10)
[01:16:26 -18562.367773] SLOW spr round 27 (radius: 15)
[01:17:15 -18562.367768] SLOW spr round 28 (radius: 20)
[01:18:19 -18562.367765] SLOW spr round 29 (radius: 25)
[01:19:30 -18562.367764] Model parameter optimization (eps = 0.100000)

[01:19:34] ML tree search #2, logLikelihood: -18562.002131

[01:19:34 -56664.618719] Initial branch length optimization
[01:19:35 -46902.450233] Model parameter optimization (eps = 10.000000)
[01:19:50 -46627.155900] AUTODETECT spr round 1 (radius: 5)
[01:20:25 -35027.711383] AUTODETECT spr round 2 (radius: 10)
[01:21:07 -27466.098655] AUTODETECT spr round 3 (radius: 15)
[01:21:52 -23499.956517] AUTODETECT spr round 4 (radius: 20)
[01:22:49 -21275.232407] AUTODETECT spr round 5 (radius: 25)
[01:23:50 -21013.917132] SPR radius for FAST iterations: 25 (autodetect)
[01:23:50 -21013.917132] Model parameter optimization (eps = 3.000000)
[01:24:00 -21005.664126] FAST spr round 1 (radius: 25)
[01:24:41 -18640.887871] FAST spr round 2 (radius: 25)
[01:25:18 -18487.936205] FAST spr round 3 (radius: 25)
[01:25:52 -18415.484612] FAST spr round 4 (radius: 25)
[01:26:24 -18396.337365] FAST spr round 5 (radius: 25)
[01:26:54 -18396.336396] Model parameter optimization (eps = 1.000000)
[01:27:03 -18392.055526] SLOW spr round 1 (radius: 5)
[01:27:40 -18390.404220] SLOW spr round 2 (radius: 5)
[01:28:19 -18390.402388] SLOW spr round 3 (radius: 10)
[01:28:58 -18390.389963] SLOW spr round 4 (radius: 15)
[01:29:55 -18385.146585] SLOW spr round 5 (radius: 5)
[01:30:45 -18382.863325] SLOW spr round 6 (radius: 5)
[01:31:28 -18379.901097] SLOW spr round 7 (radius: 5)
[01:32:07 -18379.328174] SLOW spr round 8 (radius: 5)
[01:32:44 -18379.328164] SLOW spr round 9 (radius: 10)
[01:33:22 -18379.328160] SLOW spr round 10 (radius: 15)
[01:34:17 -18374.142282] SLOW spr round 11 (radius: 5)
[01:35:05 -18374.142115] SLOW spr round 12 (radius: 10)
[01:35:49 -18373.610003] SLOW spr round 13 (radius: 5)
[01:36:36 -18370.214690] SLOW spr round 14 (radius: 5)
[01:37:17 -18370.213935] SLOW spr round 15 (radius: 10)
[01:37:57 -18370.213875] SLOW spr round 16 (radius: 15)
[01:38:52 -18370.201993] SLOW spr round 17 (radius: 20)
[01:40:03 -18369.812615] SLOW spr round 18 (radius: 5)
[01:40:52 -18369.115306] SLOW spr round 19 (radius: 5)
[01:41:34 -18369.112817] SLOW spr round 20 (radius: 10)
[01:42:13 -18369.110862] SLOW spr round 21 (radius: 15)
[01:43:07 -18369.110810] SLOW spr round 22 (radius: 20)
[01:44:19 -18369.110810] SLOW spr round 23 (radius: 25)
[01:45:44 -18369.083627] Model parameter optimization (eps = 0.100000)

[01:45:52] ML tree search #3, logLikelihood: -18366.607847

[01:45:52 -56588.399676] Initial branch length optimization
[01:45:53 -46898.905802] Model parameter optimization (eps = 10.000000)
[01:46:02 -46609.385261] AUTODETECT spr round 1 (radius: 5)
[01:46:37 -34989.874930] AUTODETECT spr round 2 (radius: 10)
[01:47:19 -27969.828807] AUTODETECT spr round 3 (radius: 15)
[01:48:03 -24601.189189] AUTODETECT spr round 4 (radius: 20)
[01:48:51 -21379.720766] AUTODETECT spr round 5 (radius: 25)
[01:49:45 -20833.237809] SPR radius for FAST iterations: 25 (autodetect)
[01:49:45 -20833.237809] Model parameter optimization (eps = 3.000000)
[01:49:53 -20821.705670] FAST spr round 1 (radius: 25)
[01:50:38 -18632.862818] FAST spr round 2 (radius: 25)
[01:51:14 -18500.693889] FAST spr round 3 (radius: 25)
[01:51:48 -18488.532273] FAST spr round 4 (radius: 25)
[01:52:21 -18483.636836] FAST spr round 5 (radius: 25)
[01:52:53 -18478.275918] FAST spr round 6 (radius: 25)
[01:53:25 -18473.590728] FAST spr round 7 (radius: 25)
[01:53:55 -18471.259203] FAST spr round 8 (radius: 25)
[01:54:26 -18471.255688] Model parameter optimization (eps = 1.000000)
[01:54:33 -18468.135587] SLOW spr round 1 (radius: 5)
[01:55:10 -18466.966028] SLOW spr round 2 (radius: 5)
[01:55:46 -18466.963826] SLOW spr round 3 (radius: 10)
[01:56:24 -18458.472584] SLOW spr round 4 (radius: 5)
[01:57:11 -18454.201936] SLOW spr round 5 (radius: 5)
[01:57:53 -18454.174117] SLOW spr round 6 (radius: 10)
[01:58:34 -18453.194890] SLOW spr round 7 (radius: 5)
[01:59:22 -18451.494791] SLOW spr round 8 (radius: 5)
[02:00:04 -18451.492634] SLOW spr round 9 (radius: 10)
[02:00:42 -18451.492337] SLOW spr round 10 (radius: 15)
[02:01:36 -18451.136222] SLOW spr round 11 (radius: 5)
[02:02:22 -18451.135838] SLOW spr round 12 (radius: 10)
[02:03:05 -18451.135827] SLOW spr round 13 (radius: 15)
[02:03:55 -18451.135826] SLOW spr round 14 (radius: 20)
[02:05:04 -18445.173409] SLOW spr round 15 (radius: 5)
[02:05:54 -18442.017890] SLOW spr round 16 (radius: 5)
[02:06:38 -18442.015769] SLOW spr round 17 (radius: 10)
[02:07:18 -18441.635292] SLOW spr round 18 (radius: 5)
[02:08:02 -18441.635161] SLOW spr round 19 (radius: 10)
[02:08:43 -18441.105100] SLOW spr round 20 (radius: 5)
[02:09:28 -18441.103793] SLOW spr round 21 (radius: 10)
[02:10:08 -18441.103477] SLOW spr round 22 (radius: 15)
[02:11:00 -18441.103358] SLOW spr round 23 (radius: 20)
[02:12:09 -18441.103279] SLOW spr round 24 (radius: 25)
[02:13:29 -18439.369918] SLOW spr round 25 (radius: 5)
[02:14:20 -18436.720860] SLOW spr round 26 (radius: 5)
[02:15:02 -18436.720770] SLOW spr round 27 (radius: 10)
[02:15:42 -18436.720700] SLOW spr round 28 (radius: 15)
[02:16:36 -18375.328216] SLOW spr round 29 (radius: 5)
[02:17:24 -18374.536745] SLOW spr round 30 (radius: 5)
[02:18:05 -18374.534887] SLOW spr round 31 (radius: 10)
[02:18:46 -18374.534505] SLOW spr round 32 (radius: 15)
[02:19:39 -18374.065419] SLOW spr round 33 (radius: 5)
[02:20:28 -18373.877954] SLOW spr round 34 (radius: 5)
[02:21:11 -18373.877285] SLOW spr round 35 (radius: 10)
[02:21:52 -18373.877096] SLOW spr round 36 (radius: 15)
[02:22:44 -18373.876917] SLOW spr round 37 (radius: 20)
[02:23:51 -18373.876736] SLOW spr round 38 (radius: 25)
[02:25:09 -18370.430941] SLOW spr round 39 (radius: 5)
[02:25:59 -18370.394180] SLOW spr round 40 (radius: 10)
[02:26:44 -18370.391348] SLOW spr round 41 (radius: 15)
[02:27:36 -18370.390843] SLOW spr round 42 (radius: 20)
[02:28:49 -18370.390627] SLOW spr round 43 (radius: 25)
[02:30:13 -18368.617360] SLOW spr round 44 (radius: 5)
[02:31:02 -18368.617180] SLOW spr round 45 (radius: 10)
[02:31:46 -18368.617000] SLOW spr round 46 (radius: 15)
[02:32:37 -18368.616819] SLOW spr round 47 (radius: 20)
[02:33:49 -18368.616639] SLOW spr round 48 (radius: 25)
[02:35:15 -18368.033681] SLOW spr round 49 (radius: 5)
[02:36:04 -18368.033402] SLOW spr round 50 (radius: 10)
[02:36:48 -18368.033153] SLOW spr round 51 (radius: 15)
[02:37:40 -18368.032910] SLOW spr round 52 (radius: 20)
[02:38:50 -18368.032670] SLOW spr round 53 (radius: 25)
[02:40:15 -18368.032429] Model parameter optimization (eps = 0.100000)

[02:40:25] ML tree search #4, logLikelihood: -18357.762927

[02:40:25 -56453.309808] Initial branch length optimization
[02:40:26 -46808.744589] Model parameter optimization (eps = 10.000000)
[02:40:38 -46540.870002] AUTODETECT spr round 1 (radius: 5)
[02:41:15 -35001.907860] AUTODETECT spr round 2 (radius: 10)
[02:41:57 -27237.827593] AUTODETECT spr round 3 (radius: 15)
[02:42:43 -24113.833991] AUTODETECT spr round 4 (radius: 20)
[02:43:29 -23011.900096] AUTODETECT spr round 5 (radius: 25)
[02:44:25 -22071.947031] SPR radius for FAST iterations: 25 (autodetect)
[02:44:25 -22071.947031] Model parameter optimization (eps = 3.000000)
[02:44:33 -22057.029053] FAST spr round 1 (radius: 25)
[02:45:13 -18841.297440] FAST spr round 2 (radius: 25)
[02:45:49 -18512.366035] FAST spr round 3 (radius: 25)
[02:46:22 -18432.718657] FAST spr round 4 (radius: 25)
[02:46:55 -18421.449126] FAST spr round 5 (radius: 25)
[02:47:27 -18420.805011] FAST spr round 6 (radius: 25)
[02:47:59 -18420.804811] Model parameter optimization (eps = 1.000000)
[02:48:07 -18409.750373] SLOW spr round 1 (radius: 5)
[02:48:46 -18401.712212] SLOW spr round 2 (radius: 5)
[02:49:24 -18400.051362] SLOW spr round 3 (radius: 5)
[02:50:01 -18400.050400] SLOW spr round 4 (radius: 10)
[02:50:39 -18399.941304] SLOW spr round 5 (radius: 5)
[02:51:27 -18393.522937] SLOW spr round 6 (radius: 5)
[02:52:09 -18393.521671] SLOW spr round 7 (radius: 10)
[02:52:49 -18393.521392] SLOW spr round 8 (radius: 15)
[02:53:43 -18392.106167] SLOW spr round 9 (radius: 5)
[02:54:34 -18391.469155] SLOW spr round 10 (radius: 5)
[02:55:19 -18391.359256] SLOW spr round 11 (radius: 5)
[02:56:01 -18391.358745] SLOW spr round 12 (radius: 10)
[02:56:41 -18391.306251] SLOW spr round 13 (radius: 15)
[02:57:37 -18390.593264] SLOW spr round 14 (radius: 5)
[02:58:25 -18390.505915] SLOW spr round 15 (radius: 10)
[02:59:08 -18390.505603] SLOW spr round 16 (radius: 15)
[03:00:01 -18390.340348] SLOW spr round 17 (radius: 5)
[03:00:49 -18390.340230] SLOW spr round 18 (radius: 10)
[03:01:32 -18390.340167] SLOW spr round 19 (radius: 15)
[03:02:26 -18390.340127] SLOW spr round 20 (radius: 20)
[03:03:38 -18389.868443] SLOW spr round 21 (radius: 5)
[03:04:29 -18389.867393] SLOW spr round 22 (radius: 10)
[03:05:14 -18389.867314] SLOW spr round 23 (radius: 15)
[03:06:07 -18389.867291] SLOW spr round 24 (radius: 20)
[03:07:18 -18389.291127] SLOW spr round 25 (radius: 5)
[03:08:08 -18389.291111] SLOW spr round 26 (radius: 10)
[03:08:50 -18389.291109] SLOW spr round 27 (radius: 15)
[03:09:44 -18389.291107] SLOW spr round 28 (radius: 20)
[03:10:57 -18389.291106] SLOW spr round 29 (radius: 25)
[03:12:19 -18385.084762] SLOW spr round 30 (radius: 5)
[03:13:11 -18333.609052] SLOW spr round 31 (radius: 5)
[03:13:54 -18333.606669] SLOW spr round 32 (radius: 10)
[03:14:35 -18333.605583] SLOW spr round 33 (radius: 15)
[03:15:29 -18333.605076] SLOW spr round 34 (radius: 20)
[03:16:38 -18333.604837] SLOW spr round 35 (radius: 25)
[03:17:59 -18333.604723] Model parameter optimization (eps = 0.100000)

[03:18:06] ML tree search #5, logLikelihood: -18333.167323

[03:18:06 -56571.180267] Initial branch length optimization
[03:18:07 -46982.912400] Model parameter optimization (eps = 10.000000)
[03:18:18 -46668.502005] AUTODETECT spr round 1 (radius: 5)
[03:18:55 -35539.869244] AUTODETECT spr round 2 (radius: 10)
[03:19:38 -28183.762511] AUTODETECT spr round 3 (radius: 15)
[03:20:26 -24424.985268] AUTODETECT spr round 4 (radius: 20)
[03:21:17 -22597.338121] AUTODETECT spr round 5 (radius: 25)
[03:22:08 -22164.782388] SPR radius for FAST iterations: 25 (autodetect)
[03:22:09 -22164.782388] Model parameter optimization (eps = 3.000000)
[03:22:15 -22148.639336] FAST spr round 1 (radius: 25)
[03:23:00 -19144.661388] FAST spr round 2 (radius: 25)
[03:23:35 -18956.905122] FAST spr round 3 (radius: 25)
[03:24:09 -18935.041096] FAST spr round 4 (radius: 25)
[03:24:43 -18933.985216] FAST spr round 5 (radius: 25)
[03:25:15 -18933.983938] Model parameter optimization (eps = 1.000000)
[03:25:21 -18933.040853] SLOW spr round 1 (radius: 5)
[03:26:01 -18931.616665] SLOW spr round 2 (radius: 5)
[03:26:40 -18930.693129] SLOW spr round 3 (radius: 5)
[03:27:18 -18930.573668] SLOW spr round 4 (radius: 5)
[03:27:55 -18930.573383] SLOW spr round 5 (radius: 10)
[03:28:34 -18930.247253] SLOW spr round 6 (radius: 5)
[03:29:19 -18930.103468] SLOW spr round 7 (radius: 5)
[03:30:03 -18923.492722] SLOW spr round 8 (radius: 5)
[03:30:42 -18916.672323] SLOW spr round 9 (radius: 5)
[03:31:21 -18916.304474] SLOW spr round 10 (radius: 5)
[03:31:59 -18916.304395] SLOW spr round 11 (radius: 10)
[03:32:39 -18915.991157] SLOW spr round 12 (radius: 5)
[03:33:26 -18915.991103] SLOW spr round 13 (radius: 10)
[03:34:09 -18915.991102] SLOW spr round 14 (radius: 15)
[03:35:01 -18915.708438] SLOW spr round 15 (radius: 5)
[03:35:48 -18915.706412] SLOW spr round 16 (radius: 10)
[03:36:30 -18915.705688] SLOW spr round 17 (radius: 15)
[03:37:21 -18915.705426] SLOW spr round 18 (radius: 20)
[03:38:24 -18901.373898] SLOW spr round 19 (radius: 5)
[03:39:15 -18895.595889] SLOW spr round 20 (radius: 5)
[03:39:59 -18895.589381] SLOW spr round 21 (radius: 10)
[03:40:40 -18895.586371] SLOW spr round 22 (radius: 15)
[03:41:34 -18895.156955] SLOW spr round 23 (radius: 5)
[03:42:21 -18895.081161] SLOW spr round 24 (radius: 10)
[03:43:04 -18895.080177] SLOW spr round 25 (radius: 15)
[03:43:54 -18895.079505] SLOW spr round 26 (radius: 20)
[03:45:04 -18851.340364] SLOW spr round 27 (radius: 5)
[03:45:54 -18550.357455] SLOW spr round 28 (radius: 5)
[03:46:40 -18457.089167] SLOW spr round 29 (radius: 5)
[03:47:22 -18452.442177] SLOW spr round 30 (radius: 5)
[03:48:02 -18452.334805] SLOW spr round 31 (radius: 5)
[03:48:41 -18452.334449] SLOW spr round 32 (radius: 10)
[03:49:20 -18452.334419] SLOW spr round 33 (radius: 15)
[03:50:19 -18442.203935] SLOW spr round 34 (radius: 5)
[03:51:08 -18439.641413] SLOW spr round 35 (radius: 5)
[03:51:51 -18437.435085] SLOW spr round 36 (radius: 5)
[03:52:31 -18435.665531] SLOW spr round 37 (radius: 5)
[03:53:10 -18434.445785] SLOW spr round 38 (radius: 5)
[03:53:48 -18434.444176] SLOW spr round 39 (radius: 10)
[03:54:28 -18434.443846] SLOW spr round 40 (radius: 15)
[03:55:28 -18434.443756] SLOW spr round 41 (radius: 20)
[03:56:44 -18433.259558] SLOW spr round 42 (radius: 5)
[03:57:33 -18432.912605] SLOW spr round 43 (radius: 5)
[03:58:17 -18432.910362] SLOW spr round 44 (radius: 10)
[03:58:58 -18432.522018] SLOW spr round 45 (radius: 5)
[03:59:42 -18432.511129] SLOW spr round 46 (radius: 10)
[04:00:24 -18432.510876] SLOW spr round 47 (radius: 15)
[04:01:22 -18432.510743] SLOW spr round 48 (radius: 20)
[04:02:39 -18432.510673] SLOW spr round 49 (radius: 25)
[04:04:02 -18432.479661] Model parameter optimization (eps = 0.100000)

[04:04:13] ML tree search #6, logLikelihood: -18426.673399

[04:04:13 -56808.028623] Initial branch length optimization
[04:04:14 -46798.628297] Model parameter optimization (eps = 10.000000)
[04:04:36 -46455.912606] AUTODETECT spr round 1 (radius: 5)
[04:05:12 -34863.202990] AUTODETECT spr round 2 (radius: 10)
[04:05:54 -27366.140995] AUTODETECT spr round 3 (radius: 15)
[04:06:38 -23731.878074] AUTODETECT spr round 4 (radius: 20)
[04:07:34 -21746.155706] AUTODETECT spr round 5 (radius: 25)
[04:08:36 -21415.386657] SPR radius for FAST iterations: 25 (autodetect)
[04:08:36 -21415.386657] Model parameter optimization (eps = 3.000000)
[04:08:46 -21396.047264] FAST spr round 1 (radius: 25)
[04:09:30 -19001.740847] FAST spr round 2 (radius: 25)
[04:10:07 -18757.217009] FAST spr round 3 (radius: 25)
[04:10:41 -18537.479460] FAST spr round 4 (radius: 25)
[04:11:14 -18327.694275] FAST spr round 5 (radius: 25)
[04:11:48 -18304.238855] FAST spr round 6 (radius: 25)
[04:12:20 -18299.166536] FAST spr round 7 (radius: 25)
[04:12:50 -18299.165720] Model parameter optimization (eps = 1.000000)
[04:12:56 -18297.772007] SLOW spr round 1 (radius: 5)
[04:13:34 -18290.592808] SLOW spr round 2 (radius: 5)
[04:14:11 -18289.530210] SLOW spr round 3 (radius: 5)
[04:14:49 -18289.529965] SLOW spr round 4 (radius: 10)
[04:15:29 -18289.175115] SLOW spr round 5 (radius: 5)
[04:16:16 -18289.174956] SLOW spr round 6 (radius: 10)
[04:16:59 -18289.174944] SLOW spr round 7 (radius: 15)
[04:17:54 -18288.693360] SLOW spr round 8 (radius: 5)
[04:18:42 -18288.693271] SLOW spr round 9 (radius: 10)
[04:19:25 -18288.693265] SLOW spr round 10 (radius: 15)
[04:20:18 -18288.693264] SLOW spr round 11 (radius: 20)
[04:21:32 -18285.585166] SLOW spr round 12 (radius: 5)
[04:22:23 -18284.065463] SLOW spr round 13 (radius: 5)
[04:23:08 -18284.064516] SLOW spr round 14 (radius: 10)
[04:23:49 -18284.064323] SLOW spr round 15 (radius: 15)
[04:24:43 -18284.064271] SLOW spr round 16 (radius: 20)
[04:25:55 -18284.064254] SLOW spr round 17 (radius: 25)
[04:27:18 -18284.064246] Model parameter optimization (eps = 0.100000)

[04:27:22] ML tree search #7, logLikelihood: -18283.981726

[04:27:22 -56714.685946] Initial branch length optimization
[04:27:23 -47033.704984] Model parameter optimization (eps = 10.000000)
[04:27:35 -46731.146243] AUTODETECT spr round 1 (radius: 5)
[04:28:09 -35110.993072] AUTODETECT spr round 2 (radius: 10)
[04:28:50 -27603.118216] AUTODETECT spr round 3 (radius: 15)
[04:29:37 -23880.705219] AUTODETECT spr round 4 (radius: 20)
[04:30:30 -23398.695752] AUTODETECT spr round 5 (radius: 25)
[04:31:31 -22342.897994] SPR radius for FAST iterations: 25 (autodetect)
[04:31:31 -22342.897994] Model parameter optimization (eps = 3.000000)
[04:31:39 -22335.106544] FAST spr round 1 (radius: 25)
[04:32:20 -19322.196581] FAST spr round 2 (radius: 25)
[04:32:56 -18947.763239] FAST spr round 3 (radius: 25)
[04:33:30 -18880.546726] FAST spr round 4 (radius: 25)
[04:34:03 -18583.352813] FAST spr round 5 (radius: 25)
[04:34:36 -18463.035519] FAST spr round 6 (radius: 25)
[04:35:07 -18427.271679] FAST spr round 7 (radius: 25)
[04:35:38 -18427.268085] Model parameter optimization (eps = 1.000000)
[04:35:47 -18421.522334] SLOW spr round 1 (radius: 5)
[04:36:25 -18417.807804] SLOW spr round 2 (radius: 5)
[04:37:03 -18416.952064] SLOW spr round 3 (radius: 5)
[04:37:41 -18416.950428] SLOW spr round 4 (radius: 10)
[04:38:21 -18416.359421] SLOW spr round 5 (radius: 5)
[04:39:07 -18411.167335] SLOW spr round 6 (radius: 5)
[04:39:50 -18406.813522] SLOW spr round 7 (radius: 5)
[04:40:30 -18405.640773] SLOW spr round 8 (radius: 5)
[04:41:06 -18405.640165] SLOW spr round 9 (radius: 10)
[04:41:43 -18405.640102] SLOW spr round 10 (radius: 15)
[04:42:43 -18368.505674] SLOW spr round 11 (radius: 5)
[04:43:33 -18346.240850] SLOW spr round 12 (radius: 5)
[04:44:17 -18346.207929] SLOW spr round 13 (radius: 10)
[04:44:58 -18343.551769] SLOW spr round 14 (radius: 5)
[04:45:44 -18343.551514] SLOW spr round 15 (radius: 10)
[04:46:25 -18340.763984] SLOW spr round 16 (radius: 5)
[04:47:11 -18340.762946] SLOW spr round 17 (radius: 10)
[04:47:52 -18340.762704] SLOW spr round 18 (radius: 15)
[04:48:47 -18335.199201] SLOW spr round 19 (radius: 5)
[04:49:36 -18334.884841] SLOW spr round 20 (radius: 5)
[04:50:19 -18334.884823] SLOW spr round 21 (radius: 10)
[04:50:59 -18334.884819] SLOW spr round 22 (radius: 15)
[04:51:55 -18334.884818] SLOW spr round 23 (radius: 20)
[04:53:08 -18333.821252] SLOW spr round 24 (radius: 5)
[04:53:58 -18331.237655] SLOW spr round 25 (radius: 5)
[04:54:42 -18331.187848] SLOW spr round 26 (radius: 10)
[04:55:22 -18331.186948] SLOW spr round 27 (radius: 15)
[04:56:16 -18331.186736] SLOW spr round 28 (radius: 20)
[04:57:32 -18331.035503] SLOW spr round 29 (radius: 5)
[04:58:22 -18331.035348] SLOW spr round 30 (radius: 10)
[04:59:06 -18331.035326] SLOW spr round 31 (radius: 15)
[05:00:01 -18331.035312] SLOW spr round 32 (radius: 20)
[05:01:16 -18331.035303] SLOW spr round 33 (radius: 25)
[05:02:38 -18331.035297] Model parameter optimization (eps = 0.100000)

[05:02:45] ML tree search #8, logLikelihood: -18330.446928

[05:02:45 -56210.538330] Initial branch length optimization
[05:02:45 -46845.452895] Model parameter optimization (eps = 10.000000)
[05:02:56 -46509.733964] AUTODETECT spr round 1 (radius: 5)
[05:03:30 -34631.283959] AUTODETECT spr round 2 (radius: 10)
[05:04:10 -27091.043902] AUTODETECT spr round 3 (radius: 15)
[05:04:56 -22669.034264] AUTODETECT spr round 4 (radius: 20)
[05:05:52 -21324.037891] AUTODETECT spr round 5 (radius: 25)
[05:06:58 -20927.440652] SPR radius for FAST iterations: 25 (autodetect)
[05:06:58 -20927.440652] Model parameter optimization (eps = 3.000000)
[05:07:05 -20922.885616] FAST spr round 1 (radius: 25)
[05:07:48 -18763.936230] FAST spr round 2 (radius: 25)
[05:08:25 -18514.556099] FAST spr round 3 (radius: 25)
[05:08:58 -18428.420125] FAST spr round 4 (radius: 25)
[05:09:29 -18428.409140] Model parameter optimization (eps = 1.000000)
[05:09:35 -18427.075843] SLOW spr round 1 (radius: 5)
[05:10:12 -18421.983238] SLOW spr round 2 (radius: 5)
[05:10:50 -18417.895271] SLOW spr round 3 (radius: 5)
[05:11:28 -18416.265350] SLOW spr round 4 (radius: 5)
[05:12:05 -18416.264025] SLOW spr round 5 (radius: 10)
[05:12:43 -18415.598407] SLOW spr round 6 (radius: 5)
[05:13:30 -18413.866817] SLOW spr round 7 (radius: 5)
[05:14:12 -18413.863878] SLOW spr round 8 (radius: 10)
[05:14:50 -18413.863836] SLOW spr round 9 (radius: 15)
[05:15:43 -18409.002788] SLOW spr round 10 (radius: 5)
[05:16:31 -18406.235700] SLOW spr round 11 (radius: 5)
[05:17:12 -18406.235372] SLOW spr round 12 (radius: 10)
[05:17:50 -18406.235366] SLOW spr round 13 (radius: 15)
[05:18:44 -18406.122813] SLOW spr round 14 (radius: 5)
[05:19:31 -18406.122675] SLOW spr round 15 (radius: 10)
[05:20:14 -18406.122672] SLOW spr round 16 (radius: 15)
[05:21:06 -18406.122671] SLOW spr round 17 (radius: 20)
[05:22:14 -18403.023596] SLOW spr round 18 (radius: 5)
[05:23:03 -18403.022850] SLOW spr round 19 (radius: 10)
[05:23:44 -18403.022820] SLOW spr round 20 (radius: 15)
[05:24:34 -18403.022818] SLOW spr round 21 (radius: 20)
[05:25:41 -18402.574263] SLOW spr round 22 (radius: 5)
[05:26:31 -18401.362503] SLOW spr round 23 (radius: 5)
[05:27:14 -18401.362147] SLOW spr round 24 (radius: 10)
[05:27:54 -18401.362138] SLOW spr round 25 (radius: 15)
[05:28:47 -18401.362136] SLOW spr round 26 (radius: 20)
[05:29:53 -18401.362136] SLOW spr round 27 (radius: 25)
[05:31:11 -18376.586248] SLOW spr round 28 (radius: 5)
[05:31:59 -18376.580047] SLOW spr round 29 (radius: 10)
[05:32:41 -18375.786705] SLOW spr round 30 (radius: 5)
[05:33:26 -18375.781516] SLOW spr round 31 (radius: 10)
[05:34:07 -18375.778778] SLOW spr round 32 (radius: 15)
[05:34:59 -18375.777255] SLOW spr round 33 (radius: 20)
[05:36:08 -18375.777056] SLOW spr round 34 (radius: 25)
[05:37:25 -18374.198631] SLOW spr round 35 (radius: 5)
[05:38:13 -18374.198606] SLOW spr round 36 (radius: 10)
[05:38:56 -18374.198606] SLOW spr round 37 (radius: 15)
[05:39:46 -18357.547814] SLOW spr round 38 (radius: 5)
[05:40:34 -18357.547793] SLOW spr round 39 (radius: 10)
[05:41:17 -18357.547790] SLOW spr round 40 (radius: 15)
[05:42:08 -18357.547789] SLOW spr round 41 (radius: 20)
[05:43:17 -18357.547789] SLOW spr round 42 (radius: 25)
[05:44:34 -18357.547789] Model parameter optimization (eps = 0.100000)

[05:44:37] ML tree search #9, logLikelihood: -18357.520217

[05:44:37 -56853.424310] Initial branch length optimization
[05:44:38 -47417.793494] Model parameter optimization (eps = 10.000000)
[05:44:52 -47090.755262] AUTODETECT spr round 1 (radius: 5)
[05:45:27 -35220.976748] AUTODETECT spr round 2 (radius: 10)
[05:46:05 -29226.168719] AUTODETECT spr round 3 (radius: 15)
[05:46:47 -26608.420391] AUTODETECT spr round 4 (radius: 20)
[05:47:39 -24574.014848] AUTODETECT spr round 5 (radius: 25)
[05:48:44 -22479.842436] SPR radius for FAST iterations: 25 (autodetect)
[05:48:44 -22479.842436] Model parameter optimization (eps = 3.000000)
[05:48:55 -22452.671191] FAST spr round 1 (radius: 25)
[05:49:41 -19027.893470] FAST spr round 2 (radius: 25)
[05:50:20 -18455.294390] FAST spr round 3 (radius: 25)
[05:50:54 -18334.717206] FAST spr round 4 (radius: 25)
[05:51:26 -18320.829795] FAST spr round 5 (radius: 25)
[05:51:57 -18320.827152] Model parameter optimization (eps = 1.000000)
[05:52:02 -18319.730597] SLOW spr round 1 (radius: 5)
[05:52:39 -18312.227244] SLOW spr round 2 (radius: 5)
[05:53:17 -18307.772106] SLOW spr round 3 (radius: 5)
[05:53:52 -18307.746454] SLOW spr round 4 (radius: 10)
[05:54:30 -18306.636513] SLOW spr round 5 (radius: 5)
[05:55:17 -18306.413551] SLOW spr round 6 (radius: 5)
[05:55:59 -18306.413206] SLOW spr round 7 (radius: 10)
[05:56:39 -18305.468220] SLOW spr round 8 (radius: 5)
[05:57:25 -18305.097875] SLOW spr round 9 (radius: 5)
[05:58:07 -18305.097826] SLOW spr round 10 (radius: 10)
[05:58:45 -18302.903908] SLOW spr round 11 (radius: 5)
[05:59:30 -18302.903615] SLOW spr round 12 (radius: 10)
[06:00:10 -18302.903589] SLOW spr round 13 (radius: 15)
[06:01:00 -18301.693090] SLOW spr round 14 (radius: 5)
[06:01:46 -18301.650852] SLOW spr round 15 (radius: 10)
[06:02:29 -18301.649933] SLOW spr round 16 (radius: 15)
[06:03:20 -18301.649933] SLOW spr round 17 (radius: 20)
[06:04:27 -18301.649933] SLOW spr round 18 (radius: 25)
[06:05:43 -18301.098657] SLOW spr round 19 (radius: 5)
[06:06:32 -18301.097671] SLOW spr round 20 (radius: 10)
[06:07:15 -18301.097614] SLOW spr round 21 (radius: 15)
[06:08:04 -18301.097606] SLOW spr round 22 (radius: 20)
[06:09:07 -18301.097604] SLOW spr round 23 (radius: 25)
[06:10:23 -18301.097604] Model parameter optimization (eps = 0.100000)

[06:10:28] ML tree search #10, logLikelihood: -18300.963951

[06:10:28 -57035.219748] Initial branch length optimization
[06:10:29 -47179.825405] Model parameter optimization (eps = 10.000000)
[06:10:42 -46762.329101] AUTODETECT spr round 1 (radius: 5)
[06:11:17 -35121.119288] AUTODETECT spr round 2 (radius: 10)
[06:11:58 -27746.993621] AUTODETECT spr round 3 (radius: 15)
[06:12:44 -23337.802150] AUTODETECT spr round 4 (radius: 20)
[06:13:38 -21441.409211] AUTODETECT spr round 5 (radius: 25)
[06:14:43 -20818.251854] SPR radius for FAST iterations: 25 (autodetect)
[06:14:43 -20818.251854] Model parameter optimization (eps = 3.000000)
[06:14:52 -20806.264960] FAST spr round 1 (radius: 25)
[06:15:38 -18660.880211] FAST spr round 2 (radius: 25)
[06:16:17 -18447.516075] FAST spr round 3 (radius: 25)
[06:16:52 -18408.875102] FAST spr round 4 (radius: 25)
[06:17:26 -18388.848812] FAST spr round 5 (radius: 25)
[06:17:58 -18381.393963] FAST spr round 6 (radius: 25)
[06:18:29 -18381.390872] Model parameter optimization (eps = 1.000000)
[06:18:38 -18364.564064] SLOW spr round 1 (radius: 5)
[06:19:15 -18359.322387] SLOW spr round 2 (radius: 5)
[06:19:53 -18359.169139] SLOW spr round 3 (radius: 5)
[06:20:29 -18359.168691] SLOW spr round 4 (radius: 10)
[06:21:07 -18358.737070] SLOW spr round 5 (radius: 5)
[06:21:55 -18357.778511] SLOW spr round 6 (radius: 5)
[06:22:37 -18357.778305] SLOW spr round 7 (radius: 10)
[06:23:17 -18356.382177] SLOW spr round 8 (radius: 5)
[06:24:04 -18354.047061] SLOW spr round 9 (radius: 5)
[06:24:46 -18354.047049] SLOW spr round 10 (radius: 10)
[06:25:27 -18352.958089] SLOW spr round 11 (radius: 5)
[06:26:13 -18352.447598] SLOW spr round 12 (radius: 5)
[06:26:55 -18352.447103] SLOW spr round 13 (radius: 10)
[06:27:36 -18349.719720] SLOW spr round 14 (radius: 5)
[06:28:21 -18349.018078] SLOW spr round 15 (radius: 5)
[06:29:03 -18349.017212] SLOW spr round 16 (radius: 10)
[06:29:41 -18349.017148] SLOW spr round 17 (radius: 15)
[06:30:34 -18346.270820] SLOW spr round 18 (radius: 5)
[06:31:21 -18342.595644] SLOW spr round 19 (radius: 5)
[06:32:04 -18342.595548] SLOW spr round 20 (radius: 10)
[06:32:44 -18342.595509] SLOW spr round 21 (radius: 15)
[06:33:38 -18340.624261] SLOW spr round 22 (radius: 5)
[06:34:27 -18340.624225] SLOW spr round 23 (radius: 10)
[06:35:10 -18340.624222] SLOW spr round 24 (radius: 15)
[06:36:02 -18340.624190] SLOW spr round 25 (radius: 20)
[06:37:12 -18331.518050] SLOW spr round 26 (radius: 5)
[06:38:02 -18329.573278] SLOW spr round 27 (radius: 5)
[06:38:44 -18329.520181] SLOW spr round 28 (radius: 10)
[06:39:24 -18329.520053] SLOW spr round 29 (radius: 15)
[06:40:15 -18329.520051] SLOW spr round 30 (radius: 20)
[06:41:24 -18329.520050] SLOW spr round 31 (radius: 25)
[06:42:43 -18329.054125] SLOW spr round 32 (radius: 5)
[06:43:34 -18328.210671] SLOW spr round 33 (radius: 5)
[06:44:17 -18328.210534] SLOW spr round 34 (radius: 10)
[06:44:58 -18327.389692] SLOW spr round 35 (radius: 5)
[06:45:44 -18327.389401] SLOW spr round 36 (radius: 10)
[06:46:25 -18327.389370] SLOW spr round 37 (radius: 15)
[06:47:16 -18327.389369] SLOW spr round 38 (radius: 20)
[06:48:24 -18327.389369] SLOW spr round 39 (radius: 25)
[06:49:43 -18326.432511] SLOW spr round 40 (radius: 5)
[06:50:32 -18326.432511] SLOW spr round 41 (radius: 10)
[06:51:16 -18326.432511] SLOW spr round 42 (radius: 15)
[06:52:08 -18326.432511] SLOW spr round 43 (radius: 20)
[06:53:17 -18326.432511] SLOW spr round 44 (radius: 25)
[06:54:37 -18326.432511] Model parameter optimization (eps = 0.100000)

[06:54:40] ML tree search #11, logLikelihood: -18326.409911

[06:54:40 -57080.051005] Initial branch length optimization
[06:54:41 -47064.504182] Model parameter optimization (eps = 10.000000)
[06:54:55 -46755.445669] AUTODETECT spr round 1 (radius: 5)
[06:55:31 -34691.020610] AUTODETECT spr round 2 (radius: 10)
[06:56:12 -27800.356596] AUTODETECT spr round 3 (radius: 15)
[06:56:59 -23461.252961] AUTODETECT spr round 4 (radius: 20)
[06:58:06 -21053.558354] AUTODETECT spr round 5 (radius: 25)
[06:59:06 -20986.605593] SPR radius for FAST iterations: 25 (autodetect)
[06:59:06 -20986.605593] Model parameter optimization (eps = 3.000000)
[06:59:15 -20959.606824] FAST spr round 1 (radius: 25)
[06:59:58 -18498.737803] FAST spr round 2 (radius: 25)
[07:00:35 -18337.390996] FAST spr round 3 (radius: 25)
[07:01:10 -18330.078237] FAST spr round 4 (radius: 25)
[07:01:43 -18322.775518] FAST spr round 5 (radius: 25)
[07:02:15 -18322.345050] FAST spr round 6 (radius: 25)
[07:02:46 -18322.344687] Model parameter optimization (eps = 1.000000)
[07:02:55 -18319.290518] SLOW spr round 1 (radius: 5)
[07:03:34 -18314.956851] SLOW spr round 2 (radius: 5)
[07:04:12 -18311.016731] SLOW spr round 3 (radius: 5)
[07:04:51 -18308.074740] SLOW spr round 4 (radius: 5)
[07:05:28 -18308.071644] SLOW spr round 5 (radius: 10)
[07:06:05 -18308.071162] SLOW spr round 6 (radius: 15)
[07:07:02 -18306.863491] SLOW spr round 7 (radius: 5)
[07:07:49 -18306.863401] SLOW spr round 8 (radius: 10)
[07:08:31 -18306.863396] SLOW spr round 9 (radius: 15)
[07:09:23 -18306.863394] SLOW spr round 10 (radius: 20)
[07:10:39 -18304.517820] SLOW spr round 11 (radius: 5)
[07:11:29 -18304.514168] SLOW spr round 12 (radius: 10)
[07:12:13 -18304.512817] SLOW spr round 13 (radius: 15)
[07:13:08 -18303.475749] SLOW spr round 14 (radius: 5)
[07:13:57 -18303.475560] SLOW spr round 15 (radius: 10)
[07:14:40 -18303.475555] SLOW spr round 16 (radius: 15)
[07:15:32 -18303.475555] SLOW spr round 17 (radius: 20)
[07:16:46 -18303.475546] SLOW spr round 18 (radius: 25)
[07:18:11 -18303.278826] SLOW spr round 19 (radius: 5)
[07:19:01 -18303.277906] SLOW spr round 20 (radius: 10)
[07:19:46 -18303.277204] SLOW spr round 21 (radius: 15)
[07:20:40 -18302.679562] SLOW spr round 22 (radius: 5)
[07:21:29 -18302.678861] SLOW spr round 23 (radius: 10)
[07:22:12 -18302.678395] SLOW spr round 24 (radius: 15)
[07:23:07 -18302.678017] SLOW spr round 25 (radius: 20)
[07:24:20 -18302.677706] SLOW spr round 26 (radius: 25)
[07:25:46 -18302.677447] Model parameter optimization (eps = 0.100000)

[07:25:50] ML tree search #12, logLikelihood: -18302.490648

[07:25:50 -56911.652024] Initial branch length optimization
[07:25:50 -47266.130158] Model parameter optimization (eps = 10.000000)
[07:26:03 -46892.686730] AUTODETECT spr round 1 (radius: 5)
[07:26:37 -34900.224268] AUTODETECT spr round 2 (radius: 10)
[07:27:17 -27538.814854] AUTODETECT spr round 3 (radius: 15)
[07:28:02 -23556.216055] AUTODETECT spr round 4 (radius: 20)
[07:28:58 -21880.553117] AUTODETECT spr round 5 (radius: 25)
[07:29:55 -21449.473606] SPR radius for FAST iterations: 25 (autodetect)
[07:29:55 -21449.473606] Model parameter optimization (eps = 3.000000)
[07:30:06 -21407.849473] FAST spr round 1 (radius: 25)
[07:30:49 -18741.977681] FAST spr round 2 (radius: 25)
[07:31:26 -18444.624731] FAST spr round 3 (radius: 25)
[07:32:01 -18409.653644] FAST spr round 4 (radius: 25)
[07:32:32 -18395.219788] FAST spr round 5 (radius: 25)
[07:33:05 -18390.242590] FAST spr round 6 (radius: 25)
[07:33:36 -18388.722080] FAST spr round 7 (radius: 25)
[07:34:06 -18386.179282] FAST spr round 8 (radius: 25)
[07:34:37 -18386.178658] Model parameter optimization (eps = 1.000000)
[07:34:45 -18380.718420] SLOW spr round 1 (radius: 5)
[07:35:22 -18374.698692] SLOW spr round 2 (radius: 5)
[07:36:01 -18372.107126] SLOW spr round 3 (radius: 5)
[07:36:39 -18371.437582] SLOW spr round 4 (radius: 5)
[07:37:16 -18371.437025] SLOW spr round 5 (radius: 10)
[07:37:55 -18368.726014] SLOW spr round 6 (radius: 5)
[07:38:43 -18367.973443] SLOW spr round 7 (radius: 5)
[07:39:25 -18367.973235] SLOW spr round 8 (radius: 10)
[07:40:06 -18367.973168] SLOW spr round 9 (radius: 15)
[07:41:00 -18361.691098] SLOW spr round 10 (radius: 5)
[07:41:48 -18352.338067] SLOW spr round 11 (radius: 5)
[07:42:32 -18351.911292] SLOW spr round 12 (radius: 5)
[07:43:11 -18351.865422] SLOW spr round 13 (radius: 10)
[07:43:50 -18349.805010] SLOW spr round 14 (radius: 5)
[07:44:36 -18348.519436] SLOW spr round 15 (radius: 5)
[07:45:19 -18347.761968] SLOW spr round 16 (radius: 5)
[07:45:58 -18347.761736] SLOW spr round 17 (radius: 10)
[07:46:37 -18347.761707] SLOW spr round 18 (radius: 15)
[07:47:30 -18347.761701] SLOW spr round 19 (radius: 20)
[07:48:36 -18340.358051] SLOW spr round 20 (radius: 5)
[07:49:25 -18340.357529] SLOW spr round 21 (radius: 10)
[07:50:08 -18340.357503] SLOW spr round 22 (radius: 15)
[07:50:58 -18338.008040] SLOW spr round 23 (radius: 5)
[07:51:46 -18338.007529] SLOW spr round 24 (radius: 10)
[07:52:27 -18338.007340] SLOW spr round 25 (radius: 15)
[07:53:17 -18337.445174] SLOW spr round 26 (radius: 5)
[07:54:04 -18337.444990] SLOW spr round 27 (radius: 10)
[07:54:46 -18337.444971] SLOW spr round 28 (radius: 15)
[07:55:37 -18337.444969] SLOW spr round 29 (radius: 20)
[07:56:43 -18337.444968] SLOW spr round 30 (radius: 25)
[07:57:59 -18334.385053] SLOW spr round 31 (radius: 5)
[07:58:49 -18334.384101] SLOW spr round 32 (radius: 10)
[07:59:34 -18334.195946] SLOW spr round 33 (radius: 5)
[08:00:20 -18334.053052] SLOW spr round 34 (radius: 5)
[08:00:59 -18334.052401] SLOW spr round 35 (radius: 10)
[08:01:39 -18334.052235] SLOW spr round 36 (radius: 15)
[08:02:30 -18334.052188] SLOW spr round 37 (radius: 20)
[08:03:33 -18334.052175] SLOW spr round 38 (radius: 25)
[08:04:48 -18334.006711] Model parameter optimization (eps = 0.100000)

[08:04:54] ML tree search #13, logLikelihood: -18332.416641

[08:04:54 -56303.873723] Initial branch length optimization
[08:04:55 -46716.967753] Model parameter optimization (eps = 10.000000)
[08:05:06 -46375.730755] AUTODETECT spr round 1 (radius: 5)
[08:05:42 -35516.518887] AUTODETECT spr round 2 (radius: 10)
[08:06:24 -27778.972773] AUTODETECT spr round 3 (radius: 15)
[08:07:13 -23421.809688] AUTODETECT spr round 4 (radius: 20)
[08:08:08 -21724.113168] AUTODETECT spr round 5 (radius: 25)
[08:09:05 -21551.141380] SPR radius for FAST iterations: 25 (autodetect)
[08:09:05 -21551.141380] Model parameter optimization (eps = 3.000000)
[08:09:15 -21527.547833] FAST spr round 1 (radius: 25)
[08:09:58 -18769.061586] FAST spr round 2 (radius: 25)
[08:10:33 -18363.523513] FAST spr round 3 (radius: 25)
[08:11:06 -18317.284539] FAST spr round 4 (radius: 25)
[08:11:38 -18309.272072] FAST spr round 5 (radius: 25)
[08:12:07 -18309.239549] Model parameter optimization (eps = 1.000000)
[08:12:18 -18299.614559] SLOW spr round 1 (radius: 5)
[08:12:57 -18290.259544] SLOW spr round 2 (radius: 5)
[08:13:36 -18290.129678] SLOW spr round 3 (radius: 5)
[08:14:13 -18290.128783] SLOW spr round 4 (radius: 10)
[08:14:52 -18282.285734] SLOW spr round 5 (radius: 5)
[08:15:40 -18277.966021] SLOW spr round 6 (radius: 5)
[08:16:22 -18277.965636] SLOW spr round 7 (radius: 10)
[08:17:01 -18277.965484] SLOW spr round 8 (radius: 15)
[08:17:56 -18272.926178] SLOW spr round 9 (radius: 5)
[08:18:44 -18269.573190] SLOW spr round 10 (radius: 5)
[08:19:28 -18269.346738] SLOW spr round 11 (radius: 5)
[08:20:07 -18269.346179] SLOW spr round 12 (radius: 10)
[08:20:45 -18269.191804] SLOW spr round 13 (radius: 5)
[08:21:31 -18268.840263] SLOW spr round 14 (radius: 5)
[08:22:13 -18268.839978] SLOW spr round 15 (radius: 10)
[08:22:52 -18268.839967] SLOW spr round 16 (radius: 15)
[08:23:46 -18268.839966] SLOW spr round 17 (radius: 20)
[08:24:56 -18268.485584] SLOW spr round 18 (radius: 5)
[08:25:46 -18268.352051] SLOW spr round 19 (radius: 5)
[08:26:29 -18268.352027] SLOW spr round 20 (radius: 10)
[08:27:09 -18268.352023] SLOW spr round 21 (radius: 15)
[08:28:01 -18268.121319] SLOW spr round 22 (radius: 5)
[08:28:49 -18267.519471] SLOW spr round 23 (radius: 5)
[08:29:30 -18267.519353] SLOW spr round 24 (radius: 10)
[08:30:09 -18267.519353] SLOW spr round 25 (radius: 15)
[08:31:00 -18267.519352] SLOW spr round 26 (radius: 20)
[08:32:10 -18267.486611] SLOW spr round 27 (radius: 25)
[08:33:30 -18267.406043] Model parameter optimization (eps = 0.100000)

[08:33:37] ML tree search #14, logLikelihood: -18267.156225

[08:33:38 -57020.331224] Initial branch length optimization
[08:33:38 -47182.933085] Model parameter optimization (eps = 10.000000)
[08:33:56 -46897.388938] AUTODETECT spr round 1 (radius: 5)
[08:34:32 -35122.124818] AUTODETECT spr round 2 (radius: 10)
[08:35:13 -29027.968411] AUTODETECT spr round 3 (radius: 15)
[08:36:02 -25612.882971] AUTODETECT spr round 4 (radius: 20)
[08:36:57 -23319.898237] AUTODETECT spr round 5 (radius: 25)
[08:37:48 -22276.234013] SPR radius for FAST iterations: 25 (autodetect)
[08:37:48 -22276.234013] Model parameter optimization (eps = 3.000000)
[08:38:01 -22240.382345] FAST spr round 1 (radius: 25)
[08:38:45 -18778.501711] FAST spr round 2 (radius: 25)
[08:39:21 -18545.149358] FAST spr round 3 (radius: 25)
[08:39:57 -18503.785134] FAST spr round 4 (radius: 25)
[08:40:31 -18490.441613] FAST spr round 5 (radius: 25)
[08:41:04 -18485.674113] FAST spr round 6 (radius: 25)
[08:41:35 -18485.503187] FAST spr round 7 (radius: 25)
[08:42:06 -18485.502950] Model parameter optimization (eps = 1.000000)
[08:42:14 -18480.233944] SLOW spr round 1 (radius: 5)
[08:42:53 -18476.450823] SLOW spr round 2 (radius: 5)
[08:43:31 -18475.631020] SLOW spr round 3 (radius: 5)
[08:44:08 -18475.630101] SLOW spr round 4 (radius: 10)
[08:44:48 -18472.872400] SLOW spr round 5 (radius: 5)
[08:45:35 -18472.427766] SLOW spr round 6 (radius: 5)
[08:46:16 -18472.423694] SLOW spr round 7 (radius: 10)
[08:46:56 -18466.147636] SLOW spr round 8 (radius: 5)
[08:47:41 -18463.632509] SLOW spr round 9 (radius: 5)
[08:48:21 -18463.632334] SLOW spr round 10 (radius: 10)
[08:48:59 -18463.632184] SLOW spr round 11 (radius: 15)
[08:49:54 -18402.163287] SLOW spr round 12 (radius: 5)
[08:50:44 -18389.322615] SLOW spr round 13 (radius: 5)
[08:51:26 -18389.322132] SLOW spr round 14 (radius: 10)
[08:52:06 -18389.322087] SLOW spr round 15 (radius: 15)
[08:52:58 -18389.322081] SLOW spr round 16 (radius: 20)
[08:54:03 -18337.066157] SLOW spr round 17 (radius: 5)
[08:54:52 -18336.054457] SLOW spr round 18 (radius: 5)
[08:55:34 -18335.965382] SLOW spr round 19 (radius: 10)
[08:56:13 -18334.872629] SLOW spr round 20 (radius: 5)
[08:56:57 -18334.872534] SLOW spr round 21 (radius: 10)
[08:57:37 -18334.872512] SLOW spr round 22 (radius: 15)
[08:58:29 -18334.669431] SLOW spr round 23 (radius: 5)
[08:59:18 -18334.669301] SLOW spr round 24 (radius: 10)
[09:00:00 -18334.669295] SLOW spr round 25 (radius: 15)
[09:00:51 -18334.669295] SLOW spr round 26 (radius: 20)
[09:01:57 -18334.669294] SLOW spr round 27 (radius: 25)
[09:03:13 -18331.458665] SLOW spr round 28 (radius: 5)
[09:04:03 -18306.024593] SLOW spr round 29 (radius: 5)
[09:04:47 -18305.587243] SLOW spr round 30 (radius: 5)
[09:05:26 -18305.585297] SLOW spr round 31 (radius: 10)
[09:06:04 -18305.585199] SLOW spr round 32 (radius: 15)
[09:06:57 -18305.585187] SLOW spr round 33 (radius: 20)
[09:08:03 -18305.513819] SLOW spr round 34 (radius: 25)
[09:09:20 -18305.425992] Model parameter optimization (eps = 0.100000)

[09:09:29] ML tree search #15, logLikelihood: -18304.509133

[09:09:29 -56719.785160] Initial branch length optimization
[09:09:30 -47044.610868] Model parameter optimization (eps = 10.000000)
[09:09:42 -46662.122506] AUTODETECT spr round 1 (radius: 5)
[09:10:18 -36141.354973] AUTODETECT spr round 2 (radius: 10)
[09:11:01 -27073.051612] AUTODETECT spr round 3 (radius: 15)
[09:11:45 -22999.029235] AUTODETECT spr round 4 (radius: 20)
[09:12:35 -22353.393346] AUTODETECT spr round 5 (radius: 25)
[09:13:31 -21220.823844] SPR radius for FAST iterations: 25 (autodetect)
[09:13:31 -21220.823844] Model parameter optimization (eps = 3.000000)
[09:13:40 -21204.947713] FAST spr round 1 (radius: 25)
[09:14:23 -18573.473215] FAST spr round 2 (radius: 25)
[09:15:00 -18425.730870] FAST spr round 3 (radius: 25)
[09:15:35 -18408.674327] FAST spr round 4 (radius: 25)
[09:16:09 -18399.441496] FAST spr round 5 (radius: 25)
[09:16:43 -18370.097829] FAST spr round 6 (radius: 25)
[09:17:16 -18360.810607] FAST spr round 7 (radius: 25)
[09:17:50 -18359.163160] FAST spr round 8 (radius: 25)
[09:18:22 -18358.672466] FAST spr round 9 (radius: 25)
[09:18:53 -18358.671331] Model parameter optimization (eps = 1.000000)
[09:19:03 -18350.592646] SLOW spr round 1 (radius: 5)
[09:19:42 -18343.073656] SLOW spr round 2 (radius: 5)
[09:20:19 -18340.375671] SLOW spr round 3 (radius: 5)
[09:20:57 -18338.990566] SLOW spr round 4 (radius: 5)
[09:21:33 -18338.800862] SLOW spr round 5 (radius: 5)
[09:22:08 -18338.785910] SLOW spr round 6 (radius: 10)
[09:22:46 -18337.687956] SLOW spr round 7 (radius: 5)
[09:23:32 -18337.666895] SLOW spr round 8 (radius: 10)
[09:24:15 -18336.840419] SLOW spr round 9 (radius: 5)
[09:25:02 -18336.839250] SLOW spr round 10 (radius: 10)
[09:25:44 -18336.838519] SLOW spr round 11 (radius: 15)
[09:26:42 -18282.075645] SLOW spr round 12 (radius: 5)
[09:27:33 -18280.861531] SLOW spr round 13 (radius: 5)
[09:28:17 -18280.083323] SLOW spr round 14 (radius: 5)
[09:28:56 -18279.872287] SLOW spr round 15 (radius: 5)
[09:29:34 -18279.869413] SLOW spr round 16 (radius: 10)
[09:30:13 -18279.868228] SLOW spr round 17 (radius: 15)
[09:31:08 -18278.371192] SLOW spr round 18 (radius: 5)
[09:31:57 -18276.806776] SLOW spr round 19 (radius: 5)
[09:32:41 -18276.806698] SLOW spr round 20 (radius: 10)
[09:33:21 -18276.806660] SLOW spr round 21 (radius: 15)
[09:34:17 -18276.806641] SLOW spr round 22 (radius: 20)
[09:35:34 -18274.871177] SLOW spr round 23 (radius: 5)
[09:36:24 -18274.871078] SLOW spr round 24 (radius: 10)
[09:37:07 -18274.871069] SLOW spr round 25 (radius: 15)
[09:38:02 -18274.871066] SLOW spr round 26 (radius: 20)
[09:39:17 -18274.871064] SLOW spr round 27 (radius: 25)
[09:40:41 -18273.638675] SLOW spr round 28 (radius: 5)
[09:41:31 -18273.638051] SLOW spr round 29 (radius: 10)
[09:42:16 -18273.638031] SLOW spr round 30 (radius: 15)
[09:43:11 -18273.638026] SLOW spr round 31 (radius: 20)
[09:44:27 -18273.638025] SLOW spr round 32 (radius: 25)
[09:45:52 -18273.638024] Model parameter optimization (eps = 0.100000)

[09:45:55] ML tree search #16, logLikelihood: -18273.618779

[09:45:55 -56476.915231] Initial branch length optimization
[09:45:56 -47020.439708] Model parameter optimization (eps = 10.000000)
[09:46:09 -46646.686828] AUTODETECT spr round 1 (radius: 5)
[09:46:45 -34714.740665] AUTODETECT spr round 2 (radius: 10)
[09:47:24 -27102.067681] AUTODETECT spr round 3 (radius: 15)
[09:48:12 -24307.528952] AUTODETECT spr round 4 (radius: 20)
[09:49:02 -23430.457637] AUTODETECT spr round 5 (radius: 25)
[09:50:00 -22185.018251] SPR radius for FAST iterations: 25 (autodetect)
[09:50:00 -22185.018251] Model parameter optimization (eps = 3.000000)
[09:50:11 -22164.135406] FAST spr round 1 (radius: 25)
[09:50:56 -19566.812084] FAST spr round 2 (radius: 25)
[09:51:33 -18433.710666] FAST spr round 3 (radius: 25)
[09:52:10 -18371.966898] FAST spr round 4 (radius: 25)
[09:52:44 -18362.095354] FAST spr round 5 (radius: 25)
[09:53:16 -18358.928006] FAST spr round 6 (radius: 25)
[09:53:47 -18358.227679] FAST spr round 7 (radius: 25)
[09:54:16 -18358.009761] FAST spr round 8 (radius: 25)
[09:54:47 -18357.993759] Model parameter optimization (eps = 1.000000)
[09:54:57 -18356.878020] SLOW spr round 1 (radius: 5)
[09:55:35 -18354.108552] SLOW spr round 2 (radius: 5)
[09:56:13 -18350.602514] SLOW spr round 3 (radius: 5)
[09:56:49 -18349.156345] SLOW spr round 4 (radius: 5)
[09:57:26 -18348.279365] SLOW spr round 5 (radius: 5)
[09:58:03 -18348.278946] SLOW spr round 6 (radius: 10)
[09:58:42 -18345.342674] SLOW spr round 7 (radius: 5)
[09:59:30 -18338.057590] SLOW spr round 8 (radius: 5)
[10:00:12 -18338.057406] SLOW spr round 9 (radius: 10)
[10:00:52 -18338.057401] SLOW spr round 10 (radius: 15)
[10:01:50 -18335.299159] SLOW spr round 11 (radius: 5)
[10:02:38 -18334.901046] SLOW spr round 12 (radius: 5)
[10:03:21 -18334.900960] SLOW spr round 13 (radius: 10)
[10:04:00 -18334.900928] SLOW spr round 14 (radius: 15)
[10:04:57 -18334.623952] SLOW spr round 15 (radius: 5)
[10:05:45 -18333.733805] SLOW spr round 16 (radius: 5)
[10:06:29 -18333.110318] SLOW spr round 17 (radius: 5)
[10:07:08 -18333.110076] SLOW spr round 18 (radius: 10)
[10:07:47 -18333.110028] SLOW spr round 19 (radius: 15)
[10:08:46 -18333.110017] SLOW spr round 20 (radius: 20)
[10:10:03 -18332.714990] SLOW spr round 21 (radius: 5)
[10:10:52 -18331.583065] SLOW spr round 22 (radius: 5)
[10:11:35 -18331.582272] SLOW spr round 23 (radius: 10)
[10:12:14 -18331.582244] SLOW spr round 24 (radius: 15)
[10:13:10 -18331.582209] SLOW spr round 25 (radius: 20)
[10:14:26 -18331.582208] SLOW spr round 26 (radius: 25)
[10:15:58 -18331.004429] SLOW spr round 27 (radius: 5)
[10:16:49 -18330.941065] SLOW spr round 28 (radius: 10)
[10:17:33 -18330.938237] SLOW spr round 29 (radius: 15)
[10:18:29 -18330.937404] SLOW spr round 30 (radius: 20)
[10:19:45 -18330.937136] SLOW spr round 31 (radius: 25)
[10:21:15 -18330.937052] Model parameter optimization (eps = 0.100000)

[10:21:29] ML tree search #17, logLikelihood: -18327.431336

[10:21:29 -56673.902300] Initial branch length optimization
[10:21:30 -47156.779389] Model parameter optimization (eps = 10.000000)
[10:21:42 -46849.927733] AUTODETECT spr round 1 (radius: 5)
[10:22:16 -35316.369809] AUTODETECT spr round 2 (radius: 10)
[10:22:57 -27916.114980] AUTODETECT spr round 3 (radius: 15)
[10:23:42 -23898.659030] AUTODETECT spr round 4 (radius: 20)
[10:24:29 -21876.087465] AUTODETECT spr round 5 (radius: 25)
[10:25:21 -21489.270824] SPR radius for FAST iterations: 25 (autodetect)
[10:25:21 -21489.270824] Model parameter optimization (eps = 3.000000)
[10:25:32 -21465.412809] FAST spr round 1 (radius: 25)
[10:26:13 -19083.345707] FAST spr round 2 (radius: 25)
[10:26:49 -18740.584242] FAST spr round 3 (radius: 25)
[10:27:23 -18526.501145] FAST spr round 4 (radius: 25)
[10:27:56 -18446.722311] FAST spr round 5 (radius: 25)
[10:28:28 -18443.954458] FAST spr round 6 (radius: 25)
[10:28:59 -18443.412711] FAST spr round 7 (radius: 25)
[10:29:29 -18443.412382] Model parameter optimization (eps = 1.000000)
[10:29:39 -18441.095891] SLOW spr round 1 (radius: 5)
[10:30:16 -18424.075298] SLOW spr round 2 (radius: 5)
[10:30:55 -18420.405813] SLOW spr round 3 (radius: 5)
[10:31:33 -18420.402929] SLOW spr round 4 (radius: 10)
[10:32:12 -18419.245194] SLOW spr round 5 (radius: 5)
[10:33:00 -18419.244749] SLOW spr round 6 (radius: 10)
[10:33:42 -18419.244697] SLOW spr round 7 (radius: 15)
[10:34:35 -18414.063035] SLOW spr round 8 (radius: 5)
[10:35:25 -18409.782761] SLOW spr round 9 (radius: 5)
[10:36:07 -18409.634960] SLOW spr round 10 (radius: 5)
[10:36:46 -18409.633861] SLOW spr round 11 (radius: 10)
[10:37:25 -18409.633848] SLOW spr round 12 (radius: 15)
[10:38:18 -18409.599045] SLOW spr round 13 (radius: 20)
[10:39:28 -18385.756559] SLOW spr round 14 (radius: 5)
[10:40:18 -18383.647041] SLOW spr round 15 (radius: 5)
[10:41:02 -18383.646666] SLOW spr round 16 (radius: 10)
[10:41:43 -18381.349500] SLOW spr round 17 (radius: 5)
[10:42:29 -18381.349452] SLOW spr round 18 (radius: 10)
[10:43:12 -18381.349433] SLOW spr round 19 (radius: 15)
[10:44:05 -18378.688299] SLOW spr round 20 (radius: 5)
[10:44:54 -18377.937959] SLOW spr round 21 (radius: 5)
[10:45:36 -18377.936917] SLOW spr round 22 (radius: 10)
[10:46:16 -18377.936770] SLOW spr round 23 (radius: 15)
[10:47:09 -18377.936733] SLOW spr round 24 (radius: 20)
[10:48:19 -18377.936724] SLOW spr round 25 (radius: 25)
[10:49:46 -18377.936721] Model parameter optimization (eps = 0.100000)

[10:49:55] ML tree search #18, logLikelihood: -18377.259675

[10:49:55 -57006.984592] Initial branch length optimization
[10:49:56 -47271.736911] Model parameter optimization (eps = 10.000000)
[10:50:08 -46967.213125] AUTODETECT spr round 1 (radius: 5)
[10:50:45 -34511.667717] AUTODETECT spr round 2 (radius: 10)
[10:51:26 -27344.766447] AUTODETECT spr round 3 (radius: 15)
[10:52:12 -23966.506435] AUTODETECT spr round 4 (radius: 20)
[10:53:01 -22936.207793] AUTODETECT spr round 5 (radius: 25)
[10:54:01 -21821.710420] SPR radius for FAST iterations: 25 (autodetect)
[10:54:01 -21821.710420] Model parameter optimization (eps = 3.000000)
[10:54:07 -21799.708747] FAST spr round 1 (radius: 25)
[10:54:51 -18681.946210] FAST spr round 2 (radius: 25)
[10:55:26 -18392.897156] FAST spr round 3 (radius: 25)
[10:56:00 -18345.712138] FAST spr round 4 (radius: 25)
[10:56:33 -18342.209746] FAST spr round 5 (radius: 25)
[10:57:05 -18341.230224] FAST spr round 6 (radius: 25)
[10:57:37 -18338.957462] FAST spr round 7 (radius: 25)
[10:58:09 -18338.957360] Model parameter optimization (eps = 1.000000)
[10:58:18 -18329.414085] SLOW spr round 1 (radius: 5)
[10:58:57 -18315.561311] SLOW spr round 2 (radius: 5)
[10:59:36 -18309.735736] SLOW spr round 3 (radius: 5)
[11:00:15 -18308.929125] SLOW spr round 4 (radius: 5)
[11:00:53 -18308.927779] SLOW spr round 5 (radius: 10)
[11:01:30 -18308.915211] SLOW spr round 6 (radius: 15)
[11:02:23 -18307.861537] SLOW spr round 7 (radius: 5)
[11:03:12 -18307.860395] SLOW spr round 8 (radius: 10)
[11:03:53 -18305.526071] SLOW spr round 9 (radius: 5)
[11:04:39 -18305.226334] SLOW spr round 10 (radius: 5)
[11:05:21 -18305.226116] SLOW spr round 11 (radius: 10)
[11:06:00 -18305.226102] SLOW spr round 12 (radius: 15)
[11:06:53 -18305.226095] SLOW spr round 13 (radius: 20)
[11:07:57 -18305.223245] SLOW spr round 14 (radius: 25)
[11:09:04 -18304.800466] SLOW spr round 15 (radius: 5)
[11:09:52 -18304.798562] SLOW spr round 16 (radius: 10)
[11:10:36 -18304.798537] SLOW spr round 17 (radius: 15)
[11:11:25 -18304.798535] SLOW spr round 18 (radius: 20)
[11:12:24 -18304.798535] SLOW spr round 19 (radius: 25)
[11:13:26 -18304.798535] Model parameter optimization (eps = 0.100000)

[11:13:31] ML tree search #19, logLikelihood: -18304.678345

[11:13:31 -56699.290152] Initial branch length optimization
[11:13:32 -47010.234853] Model parameter optimization (eps = 10.000000)
[11:13:55 -46719.889446] AUTODETECT spr round 1 (radius: 5)
[11:14:31 -35590.608077] AUTODETECT spr round 2 (radius: 10)
[11:15:14 -27409.225089] AUTODETECT spr round 3 (radius: 15)
[11:15:59 -23755.441301] AUTODETECT spr round 4 (radius: 20)
[11:16:54 -22341.265687] AUTODETECT spr round 5 (radius: 25)
[11:17:54 -21586.070163] SPR radius for FAST iterations: 25 (autodetect)
[11:17:54 -21586.070163] Model parameter optimization (eps = 3.000000)
[11:18:03 -21561.436255] FAST spr round 1 (radius: 25)
[11:18:45 -18627.110252] FAST spr round 2 (radius: 25)
[11:19:19 -18418.641190] FAST spr round 3 (radius: 25)
[11:19:53 -18373.432395] FAST spr round 4 (radius: 25)
[11:20:26 -18353.836145] FAST spr round 5 (radius: 25)
[11:20:57 -18347.944203] FAST spr round 6 (radius: 25)
[11:21:27 -18347.943143] Model parameter optimization (eps = 1.000000)
[11:21:38 -18343.356416] SLOW spr round 1 (radius: 5)
[11:22:16 -18340.448023] SLOW spr round 2 (radius: 5)
[11:22:54 -18338.028156] SLOW spr round 3 (radius: 5)
[11:23:33 -18336.906439] SLOW spr round 4 (radius: 5)
[11:24:11 -18336.905767] SLOW spr round 5 (radius: 10)
[11:24:51 -18332.664006] SLOW spr round 6 (radius: 5)
[11:25:39 -18332.661645] SLOW spr round 7 (radius: 10)
[11:26:20 -18332.659279] SLOW spr round 8 (radius: 15)
[11:27:11 -18330.142408] SLOW spr round 9 (radius: 5)
[11:27:58 -18330.137074] SLOW spr round 10 (radius: 10)
[11:28:41 -18330.136305] SLOW spr round 11 (radius: 15)
[11:29:30 -18330.117180] SLOW spr round 12 (radius: 20)
[11:30:37 -18329.908592] SLOW spr round 13 (radius: 5)
[11:31:27 -18329.752733] SLOW spr round 14 (radius: 5)
[11:32:10 -18329.752663] SLOW spr round 15 (radius: 10)
[11:32:51 -18329.752625] SLOW spr round 16 (radius: 15)
[11:33:44 -18329.752602] SLOW spr round 17 (radius: 20)
[11:34:50 -18329.690344] SLOW spr round 18 (radius: 25)
[11:36:05 -18329.690281] Model parameter optimization (eps = 0.100000)

[11:36:11] ML tree search #20, logLikelihood: -18329.048265


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.160145,0.413446) (0.224980,0.508686) (0.369433,0.541682) (0.245442,2.522916) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -18267.156225

AIC score: 39160.312449 / AICc score: 3489724.312449 / BIC score: 41842.838764
Free parameters (model + branch lengths): 1313

WARNING: Number of free parameters (K=1313) is larger than alignment size (n=57).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 123 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49641/3_mltree/P49641.raxml.log

Analysis started: 01-Jul-2021 22:52:02 / finished: 02-Jul-2021 10:28:14

Elapsed time: 41771.541 seconds

Consumed energy: 3755.744 Wh (= 19 km in an electric car, or 94 km with an e-scooter!)