RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 22:55:38 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/2_msa/P49585_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/2_msa/P49585_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 172 sites WARNING: Sequences tr_B4QMG0_B4QMG0_DROSI_7240 and tr_Q7K4C7_Q7K4C7_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QMG0_B4QMG0_DROSI_7240 and tr_B4HVU8_B4HVU8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QMG1_B4QMG1_DROSI_7240 and tr_B4HVU9_B4HVU9_DROSE_7238 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G3GSM1_G3GSM1_CRIGR_10029 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2J8RGD2_A0A2J8RGD2_PONAB_9601 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G1N6T1_G1N6T1_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G1SCM7_G1SCM7_RABIT_9986 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_F6QMX1_F6QMX1_HORSE_9796 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_W5QGH1_W5QGH1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and sp_P19836_PCY1A_RAT_10116 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_I3MRW5_I3MRW5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and sp_P49585_PCY1A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_F7GU13_F7GU13_MACMU_9544 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G5ALB6_G5ALB6_HETGA_10181 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G3T9Y2_G3T9Y2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_H0ZGR9_H0ZGR9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_F7HSY5_F7HSY5_CALJA_9483 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A287AI63_A0A287AI63_PIG_9823 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_G7NZ41_G7NZ41_MACFA_9541 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_Q2KIR5_Q2KIR5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_U3JYC4_U3JYC4_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_U3I6B7_U3I6B7_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2I3MY35_A0A2I3MY35_PAPAN_9555 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091DPW2_A0A091DPW2_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091ECL6_A0A091ECL6_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091J0N7_A0A091J0N7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A087R7Z9_A0A087R7Z9_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A093HZQ7_A0A093HZQ7_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091WZM4_A0A091WZM4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A099ZEA0_A0A099ZEA0_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091GZD7_A0A091GZD7_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A0A0ABR9_A0A0A0ABR9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2I0LU29_A0A2I0LU29_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A093GK27_A0A093GK27_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A091HX47_A0A091HX47_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A1S3FFT9_A0A1S3FFT9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A3Q0CUB8_A0A3Q0CUB8_MESAU_10036 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A1V4KMA6_A0A1V4KMA6_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A218V8K4_A0A218V8K4_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A226MPD9_A0A226MPD9_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A226P882_A0A226P882_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2K5NXI8_A0A2K5NXI8_CERAT_9531 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2K6DH42_A0A2K6DH42_MACNE_9545 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2K5ZCW3_A0A2K5ZCW3_MANLE_9568 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2R9AY69_A0A2R9AY69_PANPA_9597 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2U4ABZ7_A0A2U4ABZ7_TURTR_9739 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2Y9QYN3_A0A2Y9QYN3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2Y9MQ07_A0A2Y9MQ07_DELLE_9749 are exactly identical! WARNING: Sequences tr_E1C4K8_E1C4K8_CHICK_9031 and tr_A0A2Y9SUM5_A0A2Y9SUM5_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_M3XLZ6_M3XLZ6_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_G1P2M6_G1P2M6_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_G1ST10_G1ST10_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_E2RFX3_E2RFX3_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_F6YJJ8_F6YJJ8_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and sp_Q9QZC4_PCY1B_RAT_10116 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_I3MNS1_I3MNS1_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_G5AUJ1_G5AUJ1_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_G3SP78_G3SP78_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_K7GNX2_K7GNX2_PIG_9823 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_G1M8I4_G1M8I4_AILME_9646 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_L5K366_L5K366_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A337S627_A0A337S627_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A091CWV5_A0A091CWV5_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A093H9Z3_A0A093H9Z3_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A1S3AG17_A0A1S3AG17_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A1S3FZH0_A0A1S3FZH0_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A1U7UDR3_A0A1U7UDR3_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A1U7QJB3_A0A1U7QJB3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2U4AQP9_A0A2U4AQP9_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2U3X493_A0A2U3X493_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2U3XHC0_A0A2U3XHC0_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2Y9DYF0_A0A2Y9DYF0_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2Y9JW36_A0A2Y9JW36_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2Y9M377_A0A2Y9M377_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q811Q9_PCY1B_MOUSE_10090 and tr_A0A2Y9RWS7_A0A2Y9RWS7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_E2RBM2_E2RBM2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_D2H4Y7_D2H4Y7_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_M3X9J4_M3X9J4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_A0A2U3VC62_A0A2U3VC62_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_A0A2U3YDC7_A0A2U3YDC7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_A0A2Y9KCH5_A0A2Y9KCH5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXV7_M3XXV7_MUSPF_9669 and tr_A0A384DHT3_A0A384DHT3_URSMA_29073 are exactly identical! WARNING: Sequences tr_C5YHE2_C5YHE2_SORBI_4558 and tr_K3YLV8_K3YLV8_SETIT_4555 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_G3QIZ0_G3QIZ0_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_H2PV57_H2PV57_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_K7AI72_K7AI72_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and sp_Q9Y5K3_PCY1B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A1D5RCC8_A0A1D5RCC8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_G7Q2E1_G7Q2E1_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A096N6P2_A0A096N6P2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A0D9RPE6_A0A0D9RPE6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A2K5KUQ7_A0A2K5KUQ7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A2K6B9C6_A0A2K6B9C6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A2K5YB37_A0A2K5YB37_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H1F8_A0A2I3H1F8_NOMLE_61853 and tr_A0A2R8ZXA1_A0A2R8ZXA1_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3K9P6_J3K9P6_COCIM_246410 and tr_E9CRT5_E9CRT5_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3K9P6_J3K9P6_COCIM_246410 and tr_A0A0J6YB81_A0A0J6YB81_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q706_B6Q706_TALMQ_441960 and tr_A0A093VEH4_A0A093VEH4_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B6Q706_B6Q706_TALMQ_441960 and tr_A0A2H3IR30_A0A2H3IR30_9EURO_290292 are exactly identical! WARNING: Sequences tr_D8R4A4_D8R4A4_SELML_88036 and tr_D8RKF5_D8RKF5_SELML_88036 are exactly identical! WARNING: Sequences tr_G2WR71_G2WR71_VERDV_498257 and tr_C9S5Z8_C9S5Z8_VERA1_526221 are exactly identical! WARNING: Sequences tr_G2WR71_G2WR71_VERDV_498257 and tr_A0A0G4LWW3_A0A0G4LWW3_9PEZI_100787 are exactly identical! WARNING: Sequences tr_C1G2D3_C1G2D3_PARBD_502780 and tr_C1GPC8_C1GPC8_PARBA_502779 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_F6ZNF7_F6ZNF7_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_K7FQ92_K7FQ92_PELSI_13735 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_G3WPM1_G3WPM1_SARHA_9305 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_U3IS01_U3IS01_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A151N070_A0A151N070_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A091JNR0_A0A091JNR0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A091UN73_A0A091UN73_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A087QXI2_A0A087QXI2_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A099ZLM8_A0A099ZLM8_TINGU_94827 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A091G2V8_A0A091G2V8_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A0A0B306_A0A0A0B306_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A091HNZ5_A0A091HNZ5_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A3Q0G9A0_A0A3Q0G9A0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A226N5S8_A0A226N5S8_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1NP75_G1NP75_MELGA_9103 and tr_A0A226P6G2_A0A226P6G2_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q7RXH0_Q7RXH0_NEUCR_367110 and tr_F7W6F0_F7W6F0_SORMK_771870 are exactly identical! WARNING: Sequences tr_Q7RXH0_Q7RXH0_NEUCR_367110 and tr_G4V1T8_G4V1T8_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B5DPP5_B5DPP5_DROPS_46245 and tr_B4GS46_B4GS46_DROPE_7234 are exactly identical! WARNING: Sequences tr_B5DQE3_B5DQE3_DROPS_46245 and tr_B4H5U9_B4H5U9_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q2M046_Q2M046_DROPS_46245 and tr_B4GS47_B4GS47_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8MWE0_B8MWE0_ASPFN_332952 and tr_Q2UPL6_Q2UPL6_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8MWE0_B8MWE0_ASPFN_332952 and tr_A0A1S9DT64_A0A1S9DT64_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8MWE0_B8MWE0_ASPFN_332952 and tr_A0A2G7FUG5_A0A2G7FUG5_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A179UN66_A0A179UN66_BLAGS_559298 and tr_C5GAG8_C5GAG8_AJEDR_559297 are exactly identical! WARNING: Sequences tr_F6XC36_F6XC36_MONDO_13616 and tr_L5L2D1_L5L2D1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_W7M5R7_W7M5R7_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_A0A0D2XN77_A0A0D2XN77_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_S0E4N0_S0E4N0_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_N4TY63_N4TY63_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_X0CJP4_X0CJP4_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_A0A2H3SW90_A0A2H3SW90_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_A0A2H3H7S3_A0A2H3H7S3_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FLQ2_F9FLQ2_FUSOF_660025 and tr_A0A365MTQ1_A0A365MTQ1_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9EJG5_E9EJG5_METRA_655844 and tr_E9ECX8_E9ECX8_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9EJG5_E9EJG5_METRA_655844 and tr_A0A0B4HXK8_A0A0B4HXK8_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9EJG5_E9EJG5_METRA_655844 and tr_A0A0D9NWW5_A0A0D9NWW5_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4UKV0_J4UKV0_BEAB2_655819 and tr_A0A0A2VBN4_A0A0A2VBN4_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4UKV0_J4UKV0_BEAB2_655819 and tr_A0A166ZJM8_A0A166ZJM8_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J4UKV0_J4UKV0_BEAB2_655819 and tr_A0A2N6NYU6_A0A2N6NYU6_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A3B5Q2L9_A0A3B5Q2L9_XIPMA_8083 and tr_A0A087YMY5_A0A087YMY5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QXS9_A0A3B5QXS9_XIPMA_8083 and tr_A0A087XAG5_A0A087XAG5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QXS9_A0A3B5QXS9_XIPMA_8083 and tr_A0A2I4C2L5_A0A2I4C2L5_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AX69_M4AX69_XIPMA_8083 and tr_A0A087XTN3_A0A087XTN3_POEFO_48698 are exactly identical! WARNING: Sequences tr_K4B7H5_K4B7H5_SOLLC_4081 and tr_M1AK28_M1AK28_SOLTU_4113 are exactly identical! WARNING: Sequences tr_A0A158NCQ4_A0A158NCQ4_ATTCE_12957 and tr_A0A195BYP8_A0A195BYP8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A286XJW1_A0A286XJW1_CAVPO_10141 and tr_A0A1U7U944_A0A1U7U944_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A0E0G229_A0A0E0G229_ORYNI_4536 and tr_A0A0E0NAJ2_A0A0E0NAJ2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G229_A0A0E0G229_ORYNI_4536 and tr_A0A0D3F1C8_A0A0D3F1C8_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G229_A0A0E0G229_ORYNI_4536 and tr_A0A0D9YN04_A0A0D9YN04_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G229_A0A0E0G229_ORYNI_4536 and tr_Q6H513_Q6H513_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0J9XRQ8_A0A0J9XRQ8_BRUMA_6279 and tr_A0A158PPU7_A0A158PPU7_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A1D3E5_A1D3E5_NEOFI_331117 and tr_A0A2I1C9X6_A0A2I1C9X6_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2QQ06_A2QQ06_ASPNC_425011 and tr_G3YFH8_G3YFH8_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QQ06_A2QQ06_ASPNC_425011 and tr_A0A319AXU7_A0A319AXU7_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XKN7_G7XKN7_ASPKW_1033177 and tr_A0A100IHI9_A0A100IHI9_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XKN7_G7XKN7_ASPKW_1033177 and tr_A0A1L9NN31_A0A1L9NN31_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XKN7_G7XKN7_ASPKW_1033177 and tr_A0A317V050_A0A317V050_9EURO_1448314 are exactly identical! WARNING: Sequences tr_E5SHW0_E5SHW0_TRISP_6334 and tr_A0A0V1D0S6_A0A0V1D0S6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SHW0_E5SHW0_TRISP_6334 and tr_A0A0V0UYH2_A0A0V0UYH2_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SHW0_E5SHW0_TRISP_6334 and tr_A0A0V0ZLW1_A0A0V0ZLW1_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SHW0_E5SHW0_TRISP_6334 and tr_A0A0V1P2C0_A0A0V1P2C0_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SHW0_E5SHW0_TRISP_6334 and tr_A0A0V0TX56_A0A0V0TX56_9BILA_144512 are exactly identical! WARNING: Sequences tr_A2ZAL2_A2ZAL2_ORYSI_39946 and tr_I1QWA9_I1QWA9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2ZAL2_A2ZAL2_ORYSI_39946 and tr_A0A0E0R2Y2_A0A0E0R2Y2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2ZAL2_A2ZAL2_ORYSI_39946 and tr_A0A0D3HH04_A0A0D3HH04_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2ZAL2_A2ZAL2_ORYSI_39946 and tr_A0A0E0BE88_A0A0E0BE88_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2ZAL2_A2ZAL2_ORYSI_39946 and tr_Q9XFE5_Q9XFE5_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8BAX9_B8BAX9_ORYSI_39946 and tr_I1QFW5_I1QFW5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8BAX9_B8BAX9_ORYSI_39946 and tr_Q7EYE4_Q7EYE4_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H1VQN5_H1VQN5_COLHI_759273 and tr_A0A166XJY6_A0A166XJY6_9PEZI_708197 are exactly identical! WARNING: Sequences tr_H1VQN5_H1VQN5_COLHI_759273 and tr_A0A166MV47_A0A166MV47_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_H0Z9Y1_H0Z9Y1_TAEGU_59729 and tr_U3JND0_U3JND0_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z9Y1_H0Z9Y1_TAEGU_59729 and tr_A0A091ECM0_A0A091ECM0_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z9Y1_H0Z9Y1_TAEGU_59729 and tr_A0A218VCV1_A0A218VCV1_9PASE_299123 are exactly identical! WARNING: Sequences tr_F9XNH5_F9XNH5_ZYMTI_336722 and tr_A0A1X7S7H6_A0A1X7S7H6_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2YHE4_G2YHE4_BOTF4_999810 and tr_M7UCR0_M7UCR0_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3LCM5_E3LCM5_CAERE_31234 and tr_A0A261CSB7_A0A261CSB7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8XPQ3_A8XPQ3_CAEBR_6238 and tr_A0A2G5SWA0_A0A2G5SWA0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F2SLB2_F2SLB2_TRIRC_559305 and tr_A0A178EQR0_A0A178EQR0_TRIRU_5551 are exactly identical! WARNING: Sequences tr_B3RI62_B3RI62_TRIAD_10228 and tr_A0A369S293_A0A369S293_9METZ_287889 are exactly identical! WARNING: Sequences tr_C4VBB3_C4VBB3_NOSCE_578460 and tr_A0A0F9WQC7_A0A0F9WQC7_9MICR_40302 are exactly identical! WARNING: Sequences tr_F2PXZ9_F2PXZ9_TRIEC_559882 and tr_A0A059J970_A0A059J970_9EURO_1215338 are exactly identical! WARNING: Sequences tr_M4EUI8_M4EUI8_BRARP_51351 and tr_A0A078J601_A0A078J601_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EUI8_M4EUI8_BRARP_51351 and tr_Q42622_Q42622_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EUI8_M4EUI8_BRARP_51351 and tr_A0A0D3DYW9_A0A0D3DYW9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_S2JDP6_S2JDP6_MUCC1_1220926 and tr_A0A168L870_A0A168L870_MUCCL_747725 are exactly identical! WARNING: Sequences tr_M7ZW06_M7ZW06_TRIUA_4572 and tr_A0A3B5XZI0_A0A3B5XZI0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M2R675_M2R675_COCSN_665912 and tr_W6ZHJ0_W6ZHJ0_COCMI_930090 are exactly identical! WARNING: Sequences tr_M2R675_M2R675_COCSN_665912 and tr_A0A177D4Q6_A0A177D4Q6_ALTAL_5599 are exactly identical! WARNING: Sequences tr_M2V9X2_M2V9X2_COCH5_701091 and tr_W6YDU5_W6YDU5_COCCA_930089 are exactly identical! WARNING: Sequences tr_W2PYX8_W2PYX8_PHYPN_761204 and tr_A0A0W8BW09_A0A0W8BW09_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PYX8_W2PYX8_PHYPN_761204 and tr_W2KXV3_W2KXV3_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2Q1K2_W2Q1K2_PHYPN_761204 and tr_A0A0W8BW52_A0A0W8BW52_PHYNI_4790 are exactly identical! WARNING: Sequences tr_A0A3B6NNK2_A0A3B6NNK2_WHEAT_4565 and tr_A0A3B6PJL5_A0A3B6PJL5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6NNK2_A0A3B6NNK2_WHEAT_4565 and tr_A0A3B6QD03_A0A3B6QD03_WHEAT_4565 are exactly identical! WARNING: Sequences tr_K3WSJ0_K3WSJ0_PYTUL_431595 and tr_K3WSJ2_K3WSJ2_PYTUL_431595 are exactly identical! WARNING: Sequences tr_A0A017S6P3_A0A017S6P3_9EURO_1388766 and tr_A0A1L9VHD5_A0A1L9VHD5_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A015KJA8_A0A015KJA8_9GLOM_1432141 and tr_A0A2H5R6A7_A0A2H5R6A7_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A044SQ69_A0A044SQ69_ONCVO_6282 and tr_A0A182E2S6_A0A182E2S6_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067FAG2_A0A067FAG2_CITSI_2711 and tr_V4S6C6_V4S6C6_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067FAG2_A0A067FAG2_CITSI_2711 and tr_A0A2H5MYC9_A0A2H5MYC9_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067GCH1_A0A067GCH1_CITSI_2711 and tr_V4U7E8_V4U7E8_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GCH1_A0A067GCH1_CITSI_2711 and tr_A0A2H5PAD6_A0A2H5PAD6_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A074WPA4_A0A074WPA4_9PEZI_1043004 and tr_A0A074Y0K8_A0A074Y0K8_AURPU_1043002 are exactly identical! WARNING: Sequences tr_A0A078FGY0_A0A078FGY0_BRANA_3708 and tr_V4M9M2_V4M9M2_EUTSA_72664 are exactly identical! WARNING: Sequences tr_A0A078FGY0_A0A078FGY0_BRANA_3708 and tr_A0A0D3BSR8_A0A0D3BSR8_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078GD10_A0A078GD10_BRANA_3708 and tr_A0A0D3A816_A0A0D3A816_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094FSM4_A0A094FSM4_9PEZI_1420910 and tr_A0A094GYE8_A0A094GYE8_9PEZI_1420912 are exactly identical! WARNING: Sequences tr_A0A094FSM4_A0A094FSM4_9PEZI_1420910 and tr_A0A1B8DYG5_A0A1B8DYG5_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A094FSM4_A0A094FSM4_9PEZI_1420910 and tr_A0A1B8GLX4_A0A1B8GLX4_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A067CQ07_A0A067CQ07_SAPPC_695850 and tr_T0RI77_T0RI77_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2M1D0_A0A0D2M1D0_GOSRA_29730 and tr_A0A1U8P497_A0A1U8P497_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F9XDL9_A0A0F9XDL9_TRIHA_5544 and tr_A0A2T4AJT8_A0A2T4AJT8_TRIHA_983964 are exactly identical! WARNING: Sequences tr_A0A0F8V615_A0A0F8V615_9EURO_308745 and tr_A0A2T5M1L2_A0A2T5M1L2_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0F0Q4_A0A0K0F0Q4_STRVS_75913 and tr_A0A0N5BQX9_A0A0N5BQX9_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0M9F0D4_A0A0M9F0D4_FUSLA_179993 and tr_A0A1B8B8E2_A0A1B8B8E2_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0M9F0D4_A0A0M9F0D4_FUSLA_179993 and tr_A0A2L2T7Q1_A0A2L2T7Q1_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A0F7TTL5_A0A0F7TTL5_9EURO_104259 and tr_A0A1Q5TMD9_A0A1Q5TMD9_9EURO_1316194 are exactly identical! WARNING: Sequences tr_A0A151MM02_A0A151MM02_ALLMI_8496 and tr_A0A1U7RQY5_A0A1U7RQY5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0D2GU69_A0A0D2GU69_9EURO_1442368 and tr_A0A0D2E9B7_A0A0D2E9B7_9EURO_5601 are exactly identical! WARNING: Sequences tr_A0A0D2GU69_A0A0D2GU69_9EURO_1442368 and tr_A0A0D2AQ41_A0A0D2AQ41_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A0D2GU69_A0A0D2GU69_9EURO_1442368 and tr_A0A1C1CQ49_A0A1C1CQ49_9EURO_86049 are exactly identical! WARNING: Sequences tr_A0A0G4P0Q5_A0A0G4P0Q5_PENCA_1429867 and tr_A0A117NRT3_A0A117NRT3_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0G4P0Q5_A0A0G4P0Q5_PENCA_1429867 and tr_A0A1V6NEI0_A0A1V6NEI0_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A2I0MLD1_A0A2I0MLD1_COLLI_8932 and tr_A0A1V4JC80_A0A1V4JC80_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0X3F5_A0A0V0X3F5_9BILA_92179 and tr_A0A0V1LMI6_A0A0V1LMI6_9BILA_6335 are exactly identical! WARNING: Sequences tr_V6RXE7_V6RXE7_GIBZE_229533 and tr_A0A2T4GHZ9_A0A2T4GHZ9_FUSCU_5516 are exactly identical! WARNING: Sequences tr_V6RXE7_V6RXE7_GIBZE_229533 and tr_A0A366S0U4_A0A366S0U4_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_A0A151XEW7_A0A151XEW7_9HYME_64791 and tr_A0A195F8F7_A0A195F8F7_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A195DTA9_A0A195DTA9_9HYME_471704 and tr_A0A195CH29_A0A195CH29_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A194W9T2_A0A194W9T2_9PEZI_105487 and tr_A0A194UV10_A0A194UV10_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1S4CAW1_A0A1S4CAW1_TOBAC_4097 and tr_A0A1U7XEI5_A0A1U7XEI5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3NC96_A0A1S3NC96_SALSA_8030 and tr_A0A060XIT5_A0A060XIT5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R160_A0A1S3R160_SALSA_8030 and tr_B5X4L7_B5X4L7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3R160_A0A1S3R160_SALSA_8030 and tr_A0A060WL63_A0A060WL63_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B8CBI1_A0A1B8CBI1_9PEZI_1622147 and tr_A0A1B8EYE4_A0A1B8EYE4_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1I7UD44_A0A1I7UD44_9PELO_1561998 and tr_A0A1I7UD45_A0A1I7UD45_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1J1IQ98_A0A1J1IQ98_9DIPT_568069 and tr_A0A1J1IRR0_A0A1J1IRR0_9DIPT_568069 are exactly identical! WARNING: Sequences tr_A0A1V8UI12_A0A1V8UI12_9PEZI_1974281 and tr_A0A1V8UTA0_A0A1V8UTA0_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A1V8UI12_A0A1V8UI12_9PEZI_1974281 and tr_A0A1V8SCW2_A0A1V8SCW2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UI12_A0A1V8UI12_9PEZI_1974281 and tr_A0A1V8SUU3_A0A1V8SUU3_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2G3A6C8_A0A2G3A6C8_CAPAN_4072 and tr_A0A2G3D3T1_A0A2G3D3T1_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2S7NZW8_A0A2S7NZW8_9HELO_2070414 and tr_A0A2S7PZ01_A0A2S7PZ01_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2G4SIG1_A0A2G4SIG1_9FUNG_1340429 and tr_A0A367J8Y9_A0A367J8Y9_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2G4SIG1_A0A2G4SIG1_9FUNG_1340429 and tr_A0A367J9K2_A0A367J9K2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A319CCL6_A0A319CCL6_9EURO_1448315 and tr_A0A2V5HMX1_A0A2V5HMX1_9EURO_1450541 are exactly identical! WARNING: Duplicate sequences found: 249 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.reduced.phy Alignment comprises 1 partitions and 171 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 172 / 171 Gaps: 0.49 % Invariant sites: 5.81 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 171 / 13680 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -196307.440004] Initial branch length optimization [00:00:03 -165344.961220] Model parameter optimization (eps = 10.000000) [00:00:40 -164850.681669] AUTODETECT spr round 1 (radius: 5) [00:02:56 -94389.258309] AUTODETECT spr round 2 (radius: 10) [00:05:12 -71894.358777] AUTODETECT spr round 3 (radius: 15) [00:07:37 -61098.250423] AUTODETECT spr round 4 (radius: 20) [00:10:25 -54310.767248] AUTODETECT spr round 5 (radius: 25) [00:13:10 -50982.945173] SPR radius for FAST iterations: 25 (autodetect) [00:13:10 -50982.945173] Model parameter optimization (eps = 3.000000) [00:13:28 -50947.873931] FAST spr round 1 (radius: 25) [00:16:03 -38886.571985] FAST spr round 2 (radius: 25) [00:17:56 -37499.347768] FAST spr round 3 (radius: 25) [00:19:42 -37392.396794] FAST spr round 4 (radius: 25) [00:21:13 -37382.863028] FAST spr round 5 (radius: 25) [00:22:38 -37380.430254] FAST spr round 6 (radius: 25) [00:24:02 -37380.430245] Model parameter optimization (eps = 1.000000) [00:24:13 -37379.147173] SLOW spr round 1 (radius: 5) [00:25:55 -37357.916241] SLOW spr round 2 (radius: 5) [00:27:39 -37346.790940] SLOW spr round 3 (radius: 5) [00:29:24 -37343.747177] SLOW spr round 4 (radius: 5) [00:31:09 -37343.746919] SLOW spr round 5 (radius: 10) [00:33:04 -37343.746855] SLOW spr round 6 (radius: 15) [00:35:38 -37343.746844] SLOW spr round 7 (radius: 20) [00:39:13 -37343.746841] SLOW spr round 8 (radius: 25) [00:43:44 -37313.279562] SLOW spr round 9 (radius: 5) [00:46:10 -37313.279543] SLOW spr round 10 (radius: 10) [00:48:13 -37313.279543] SLOW spr round 11 (radius: 15) [00:50:42 -37313.279543] SLOW spr round 12 (radius: 20) [00:51:26] [worker #1] ML tree search #2, logLikelihood: -37315.466847 [00:54:21 -37313.279543] SLOW spr round 13 (radius: 25) [00:58:48 -37313.279543] Model parameter optimization (eps = 0.100000) [00:58:56] [worker #0] ML tree search #1, logLikelihood: -37313.076212 [00:58:56 -195649.008852] Initial branch length optimization [00:59:00 -164164.720309] Model parameter optimization (eps = 10.000000) [00:59:32 -163678.792216] AUTODETECT spr round 1 (radius: 5) [01:01:47 -94991.964808] AUTODETECT spr round 2 (radius: 10) [01:04:06 -71293.237624] AUTODETECT spr round 3 (radius: 15) [01:06:28 -57281.626213] AUTODETECT spr round 4 (radius: 20) [01:08:11] [worker #2] ML tree search #3, logLikelihood: -37312.312716 [01:09:20 -50630.620001] AUTODETECT spr round 5 (radius: 25) [01:12:16 -46140.637008] SPR radius for FAST iterations: 25 (autodetect) [01:12:16 -46140.637008] Model parameter optimization (eps = 3.000000) [01:12:31 -46128.000880] FAST spr round 1 (radius: 25) [01:14:55 -38338.188811] FAST spr round 2 (radius: 25) [01:16:41 -37430.950223] FAST spr round 3 (radius: 25) [01:18:21 -37362.535199] FAST spr round 4 (radius: 25) [01:19:49 -37362.304476] FAST spr round 5 (radius: 25) [01:21:13 -37362.304365] Model parameter optimization (eps = 1.000000) [01:21:23 -37359.307183] SLOW spr round 1 (radius: 5) [01:23:07 -37338.847784] SLOW spr round 2 (radius: 5) [01:24:54 -37336.551049] SLOW spr round 3 (radius: 5) [01:26:37 -37336.550880] SLOW spr round 4 (radius: 10) [01:28:33 -37333.522299] SLOW spr round 5 (radius: 5) [01:30:50 -37332.372182] SLOW spr round 6 (radius: 5) [01:32:46 -37332.371309] SLOW spr round 7 (radius: 10) [01:34:42 -37330.964875] SLOW spr round 8 (radius: 5) [01:36:52 -37330.964680] SLOW spr round 9 (radius: 10) [01:38:50 -37330.964515] SLOW spr round 10 (radius: 15) [01:40:25] [worker #1] ML tree search #5, logLikelihood: -37335.886595 [01:41:12 -37330.964344] SLOW spr round 11 (radius: 20) [01:44:31 -37330.964171] SLOW spr round 12 (radius: 25) [01:48:25 -37330.963994] Model parameter optimization (eps = 0.100000) [01:48:30] [worker #0] ML tree search #4, logLikelihood: -37330.931904 [01:48:30 -195488.819797] Initial branch length optimization [01:48:34 -164347.705330] Model parameter optimization (eps = 10.000000) [01:49:13 -163867.437648] AUTODETECT spr round 1 (radius: 5) [01:51:26 -97512.366922] AUTODETECT spr round 2 (radius: 10) [01:53:49 -72348.465842] AUTODETECT spr round 3 (radius: 15) [01:56:08 -65234.102455] AUTODETECT spr round 4 (radius: 20) [01:58:48 -58840.897191] AUTODETECT spr round 5 (radius: 25) [01:59:19] [worker #2] ML tree search #6, logLikelihood: -37346.082156 [02:01:50 -55200.176365] SPR radius for FAST iterations: 25 (autodetect) [02:01:50 -55200.176365] Model parameter optimization (eps = 3.000000) [02:02:02 -55177.938238] FAST spr round 1 (radius: 25) [02:04:41 -41859.111742] FAST spr round 2 (radius: 25) [02:06:42 -38665.316529] FAST spr round 3 (radius: 25) [02:08:31 -37524.165222] FAST spr round 4 (radius: 25) [02:10:05 -37381.367136] FAST spr round 5 (radius: 25) [02:11:33 -37378.872222] FAST spr round 6 (radius: 25) [02:12:57 -37376.762993] FAST spr round 7 (radius: 25) [02:14:20 -37373.827463] FAST spr round 8 (radius: 25) [02:15:42 -37373.827458] Model parameter optimization (eps = 1.000000) [02:15:52 -37371.852400] SLOW spr round 1 (radius: 5) [02:17:37 -37360.340056] SLOW spr round 2 (radius: 5) [02:19:20 -37353.492765] SLOW spr round 3 (radius: 5) [02:21:01 -37353.492285] SLOW spr round 4 (radius: 10) [02:22:52 -37353.492273] SLOW spr round 5 (radius: 15) [02:25:29 -37353.492272] SLOW spr round 6 (radius: 20) [02:29:16 -37350.546489] SLOW spr round 7 (radius: 5) [02:31:00] [worker #1] ML tree search #8, logLikelihood: -37322.353986 [02:31:43 -37350.546413] SLOW spr round 8 (radius: 10) [02:33:48 -37350.546412] SLOW spr round 9 (radius: 15) [02:36:19 -37350.546412] SLOW spr round 10 (radius: 20) [02:40:04 -37350.546412] SLOW spr round 11 (radius: 25) [02:45:03 -37349.201997] SLOW spr round 12 (radius: 5) [02:47:35 -37347.066463] SLOW spr round 13 (radius: 5) [02:49:44 -37346.722069] SLOW spr round 14 (radius: 5) [02:51:44 -37344.966943] SLOW spr round 15 (radius: 5) [02:53:36 -37343.284337] SLOW spr round 16 (radius: 5) [02:55:22 -37343.184754] SLOW spr round 17 (radius: 10) [02:57:16 -37343.184316] SLOW spr round 18 (radius: 15) [02:59:52 -37343.184302] SLOW spr round 19 (radius: 20) [03:03:40 -37343.184300] SLOW spr round 20 (radius: 25) [03:08:34 -37343.184300] Model parameter optimization (eps = 0.100000) [03:08:40] [worker #0] ML tree search #7, logLikelihood: -37343.142314 [03:08:40 -196004.123041] Initial branch length optimization [03:08:44 -165039.809659] Model parameter optimization (eps = 10.000000) [03:09:07] [worker #2] ML tree search #9, logLikelihood: -37304.275409 [03:09:17 -164520.745578] AUTODETECT spr round 1 (radius: 5) [03:11:33 -96851.039475] AUTODETECT spr round 2 (radius: 10) [03:13:56 -70647.077055] AUTODETECT spr round 3 (radius: 15) [03:16:25 -58949.804346] AUTODETECT spr round 4 (radius: 20) [03:19:11 -50756.279390] AUTODETECT spr round 5 (radius: 25) [03:22:12 -47069.563095] SPR radius for FAST iterations: 25 (autodetect) [03:22:12 -47069.563095] Model parameter optimization (eps = 3.000000) [03:22:29 -47052.415084] FAST spr round 1 (radius: 25) [03:24:55 -38035.100495] FAST spr round 2 (radius: 25) [03:26:52 -37437.531374] FAST spr round 3 (radius: 25) [03:28:38 -37388.121754] FAST spr round 4 (radius: 25) [03:30:14 -37374.658121] FAST spr round 5 (radius: 25) [03:31:05] [worker #1] ML tree search #11, logLikelihood: -37313.746271 [03:31:45 -37373.152578] FAST spr round 6 (radius: 25) [03:33:13 -37373.152353] Model parameter optimization (eps = 1.000000) [03:33:19 -37373.021725] SLOW spr round 1 (radius: 5) [03:35:08 -37363.946003] SLOW spr round 2 (radius: 5) [03:36:57 -37359.093311] SLOW spr round 3 (radius: 5) [03:38:43 -37357.004140] SLOW spr round 4 (radius: 5) [03:40:27 -37356.883412] SLOW spr round 5 (radius: 5) [03:42:14 -37356.883410] SLOW spr round 6 (radius: 10) [03:44:11 -37347.499074] SLOW spr round 7 (radius: 5) [03:46:34 -37341.459655] SLOW spr round 8 (radius: 5) [03:48:36 -37341.459653] SLOW spr round 9 (radius: 10) [03:50:34 -37339.919278] SLOW spr round 10 (radius: 5) [03:52:52 -37337.406847] SLOW spr round 11 (radius: 5) [03:54:52 -37337.406842] SLOW spr round 12 (radius: 10) [03:56:49 -37337.406842] SLOW spr round 13 (radius: 15) [03:59:19 -37337.406842] SLOW spr round 14 (radius: 20) [04:02:42 -37337.406842] SLOW spr round 15 (radius: 25) [04:06:56 -37335.608568] SLOW spr round 16 (radius: 5) [04:09:24 -37335.119974] SLOW spr round 17 (radius: 5) [04:11:32 -37335.119968] SLOW spr round 18 (radius: 10) [04:13:28 -37335.119968] SLOW spr round 19 (radius: 15) [04:15:06] [worker #2] ML tree search #12, logLikelihood: -37316.164219 [04:15:54 -37335.119968] SLOW spr round 20 (radius: 20) [04:19:07 -37335.119968] SLOW spr round 21 (radius: 25) [04:23:13 -37335.119968] Model parameter optimization (eps = 0.100000) [04:23:18] [worker #0] ML tree search #10, logLikelihood: -37335.084806 [04:23:19 -195399.945118] Initial branch length optimization [04:23:22 -164782.346537] Model parameter optimization (eps = 10.000000) [04:24:02 -164283.559665] AUTODETECT spr round 1 (radius: 5) [04:26:22 -95588.768365] AUTODETECT spr round 2 (radius: 10) [04:28:47 -68992.689845] AUTODETECT spr round 3 (radius: 15) [04:31:15 -55222.130319] AUTODETECT spr round 4 (radius: 20) [04:34:01 -50736.821502] AUTODETECT spr round 5 (radius: 25) [04:37:00 -47957.588826] SPR radius for FAST iterations: 25 (autodetect) [04:37:00 -47957.588826] Model parameter optimization (eps = 3.000000) [04:37:17 -47934.716188] FAST spr round 1 (radius: 25) [04:38:11] [worker #1] ML tree search #14, logLikelihood: -37312.204476 [04:39:43 -38631.098696] FAST spr round 2 (radius: 25) [04:41:34 -37689.553719] FAST spr round 3 (radius: 25) [04:43:24 -37626.001655] FAST spr round 4 (radius: 25) [04:45:03 -37609.102557] FAST spr round 5 (radius: 25) [04:46:35 -37608.188468] FAST spr round 6 (radius: 25) [04:48:06 -37607.079917] FAST spr round 7 (radius: 25) [04:49:35 -37607.079914] Model parameter optimization (eps = 1.000000) [04:49:41 -37606.133264] SLOW spr round 1 (radius: 5) [04:51:26 -37593.774761] SLOW spr round 2 (radius: 5) [04:53:17 -37586.275849] SLOW spr round 3 (radius: 5) [04:55:06 -37585.957560] SLOW spr round 4 (radius: 5) [04:56:53 -37585.957505] SLOW spr round 5 (radius: 10) [04:58:50 -37585.456769] SLOW spr round 6 (radius: 5) [05:01:13 -37584.899949] SLOW spr round 7 (radius: 5) [05:03:17 -37584.899913] SLOW spr round 8 (radius: 10) [05:04:00] [worker #2] ML tree search #15, logLikelihood: -37348.823592 [05:05:13 -37583.025969] SLOW spr round 9 (radius: 5) [05:07:30 -37583.025869] SLOW spr round 10 (radius: 10) [05:09:31 -37583.025868] SLOW spr round 11 (radius: 15) [05:11:58 -37583.025868] SLOW spr round 12 (radius: 20) [05:15:17 -37583.025868] SLOW spr round 13 (radius: 25) [05:19:34 -37583.025868] Model parameter optimization (eps = 0.100000) [05:19:43] [worker #0] ML tree search #13, logLikelihood: -37582.692821 [05:19:43 -195462.607801] Initial branch length optimization [05:19:48 -164408.482324] Model parameter optimization (eps = 10.000000) [05:20:23 -163895.865310] AUTODETECT spr round 1 (radius: 5) [05:22:45 -95763.497092] AUTODETECT spr round 2 (radius: 10) [05:25:11 -72588.059331] AUTODETECT spr round 3 (radius: 15) [05:27:36 -60595.919264] AUTODETECT spr round 4 (radius: 20) [05:30:23 -51555.101094] AUTODETECT spr round 5 (radius: 25) [05:33:47 -48385.195416] SPR radius for FAST iterations: 25 (autodetect) [05:33:47 -48385.195416] Model parameter optimization (eps = 3.000000) [05:34:05 -48367.004685] FAST spr round 1 (radius: 25) [05:36:30 -38042.864379] FAST spr round 2 (radius: 25) [05:38:20 -37406.347671] FAST spr round 3 (radius: 25) [05:40:03 -37365.431916] FAST spr round 4 (radius: 25) [05:41:39 -37352.060483] FAST spr round 5 (radius: 25) [05:43:08 -37347.383687] FAST spr round 6 (radius: 25) [05:44:34 -37347.383504] Model parameter optimization (eps = 1.000000) [05:44:48 -37345.645564] SLOW spr round 1 (radius: 5) [05:46:32 -37326.632694] SLOW spr round 2 (radius: 5) [05:48:15 -37323.818960] SLOW spr round 3 (radius: 5) [05:49:58 -37323.818716] SLOW spr round 4 (radius: 10) [05:51:55 -37318.163735] SLOW spr round 5 (radius: 5) [05:54:19 -37308.930515] SLOW spr round 6 (radius: 5) [05:56:20 -37308.930320] SLOW spr round 7 (radius: 10) [05:58:04] [worker #2] ML tree search #18, logLikelihood: -37309.390174 [05:58:12 -37308.930133] SLOW spr round 8 (radius: 15) [06:00:42 -37308.929941] SLOW spr round 9 (radius: 20) [06:04:09 -37308.929745] SLOW spr round 10 (radius: 25) [06:07:26] [worker #1] ML tree search #17, logLikelihood: -37333.821364 [06:08:12 -37308.929546] Model parameter optimization (eps = 0.100000) [06:08:23] [worker #0] ML tree search #16, logLikelihood: -37308.452560 [06:08:23 -197004.570528] Initial branch length optimization [06:08:27 -165150.625050] Model parameter optimization (eps = 10.000000) [06:09:04 -164638.104009] AUTODETECT spr round 1 (radius: 5) [06:11:27 -95302.628531] AUTODETECT spr round 2 (radius: 10) [06:13:49 -70736.793857] AUTODETECT spr round 3 (radius: 15) [06:16:13 -59639.427218] AUTODETECT spr round 4 (radius: 20) [06:18:59 -52258.816618] AUTODETECT spr round 5 (radius: 25) [06:21:51 -48069.605528] SPR radius for FAST iterations: 25 (autodetect) [06:21:51 -48069.605528] Model parameter optimization (eps = 3.000000) [06:22:05 -48050.633801] FAST spr round 1 (radius: 25) [06:24:28 -37932.111389] FAST spr round 2 (radius: 25) [06:26:22 -37422.506410] FAST spr round 3 (radius: 25) [06:28:05 -37370.614559] FAST spr round 4 (radius: 25) [06:29:38 -37363.266971] FAST spr round 5 (radius: 25) [06:31:04 -37358.937609] FAST spr round 6 (radius: 25) [06:32:29 -37358.040604] FAST spr round 7 (radius: 25) [06:33:55 -37358.040363] Model parameter optimization (eps = 1.000000) [06:34:03 -37357.487879] SLOW spr round 1 (radius: 5) [06:35:49 -37347.486530] SLOW spr round 2 (radius: 5) [06:37:36 -37344.519870] SLOW spr round 3 (radius: 5) [06:39:17 -37344.519856] SLOW spr round 4 (radius: 10) [06:41:12 -37344.519772] SLOW spr round 5 (radius: 15) [06:43:51 -37344.270226] SLOW spr round 6 (radius: 5) [06:46:25 -37342.547896] SLOW spr round 7 (radius: 5) [06:48:29 -37342.547838] SLOW spr round 8 (radius: 10) [06:49:56] [worker #1] ML tree search #20, logLikelihood: -37343.738070 [06:50:30 -37342.547837] SLOW spr round 9 (radius: 15) [06:53:04 -37342.547837] SLOW spr round 10 (radius: 20) [06:56:47 -37342.547837] SLOW spr round 11 (radius: 25) [07:01:17 -37340.264957] SLOW spr round 12 (radius: 5) [07:03:50 -37340.264828] SLOW spr round 13 (radius: 10) [07:06:04 -37339.106100] SLOW spr round 14 (radius: 5) [07:08:16 -37339.105524] SLOW spr round 15 (radius: 10) [07:10:19 -37339.105515] SLOW spr round 16 (radius: 15) [07:12:49 -37339.105515] SLOW spr round 17 (radius: 20) [07:16:23 -37339.105515] SLOW spr round 18 (radius: 25) [07:20:44 -37339.105515] Model parameter optimization (eps = 0.100000) [07:20:50] [worker #0] ML tree search #19, logLikelihood: -37339.089645 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.282147,0.332754) (0.356339,0.518072) (0.243911,1.246116) (0.117604,3.550604) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -37304.275409 AIC score: 78618.550818 / AICc score: 8122678.550818 / BIC score: 84929.277244 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=172). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P49585/3_mltree/P49585.raxml.log Analysis started: 01-Jul-2021 22:55:38 / finished: 02-Jul-2021 06:16:29 Elapsed time: 26450.772 seconds Consumed energy: 2426.881 Wh (= 12 km in an electric car, or 61 km with an e-scooter!)