RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:20:41 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/2_msa/P49336_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/3_mltree/P49336.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647241 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/2_msa/P49336_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 464 sites WARNING: Sequences tr_B4QNQ1_B4QNQ1_DROSI_7240 and tr_B4HLQ4_B4HLQ4_DROSE_7238 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_G3QUM8_G3QUM8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_H2NJG6_H2NJG6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_G1T9S5_G1T9S5_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_H2Q7B5_H2Q7B5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_I3MRT5_I3MRT5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and sp_P49336_CDK8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_H9FNK1_H9FNK1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_U3DXG6_U3DXG6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_G7PVW1_G7PVW1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_M3WW64_M3WW64_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A096MXS9_A0A096MXS9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A091DST1_A0A091DST1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A0D9RZG8_A0A0D9RZG8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A2K5L340_A0A2K5L340_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A2K6BRD3_A0A2K6BRD3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A2R9B4M4_A0A2R9B4M4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RUX2_G1RUX2_NOMLE_61853 and tr_A0A2Y9L3X2_A0A2Y9L3X2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q1EBK0_SSN3_COCIM_246410 and tr_E9DJC6_E9DJC6_COCPS_443226 are exactly identical! WARNING: Sequences sp_Q1EBK0_SSN3_COCIM_246410 and tr_A0A0J6XWU6_A0A0J6XWU6_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q301_B6Q301_TALMQ_441960 and tr_A0A093XV79_A0A093XV79_TALMA_1077442 are exactly identical! WARNING: Sequences tr_D8S783_D8S783_SELML_88036 and tr_D8SZ08_D8SZ08_SELML_88036 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A091JJ46_A0A091JJ46_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A091VT57_A0A091VT57_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A087QMA5_A0A087QMA5_APTFO_9233 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A093I7Z9_A0A093I7Z9_STRCA_441894 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A091GG72_A0A091GG72_9AVES_55661 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A0A0AW49_A0A0A0AW49_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A093J0W2_A0A093J0W2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H9G703_H9G703_ANOCA_28377 and tr_A0A091I2K9_A0A091I2K9_CALAN_9244 are exactly identical! WARNING: Sequences tr_B8P2B5_B8P2B5_POSPM_561896 and tr_A0A1X6NDN0_A0A1X6NDN0_9APHY_670580 are exactly identical! WARNING: Sequences tr_B5DRF0_B5DRF0_DROPS_46245 and tr_B4N6I4_B4N6I4_DROWI_7260 are exactly identical! WARNING: Sequences tr_B5DRF0_B5DRF0_DROPS_46245 and tr_B4H405_B4H405_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RMV5_E2RMV5_CANLF_9615 and tr_A0A1S3A385_A0A1S3A385_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E2RMV5_E2RMV5_CANLF_9615 and tr_A0A2U3X3V4_A0A2U3X3V4_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RMV5_E2RMV5_CANLF_9615 and tr_A0A384C7E7_A0A384C7E7_URSMA_29073 are exactly identical! WARNING: Sequences tr_K7DDU7_K7DDU7_PANTR_9598 and sp_Q9BWU1_CDK19_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7DDU7_K7DDU7_PANTR_9598 and tr_A0A2R9BC80_A0A2R9BC80_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q4WYR6_SSN3_ASPFU_330879 and sp_A1D624_SSN3_NEOFI_331117 are exactly identical! WARNING: Sequences tr_J4UQB1_J4UQB1_BEAB2_655819 and tr_A0A0A2VU30_A0A0A2VU30_BEABA_1245745 are exactly identical! WARNING: Sequences tr_A0A158NL63_A0A158NL63_ATTCE_12957 and tr_F4WFV1_F4WFV1_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NL63_A0A158NL63_ATTCE_12957 and tr_A0A195F0R0_A0A195F0R0_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NL63_A0A158NL63_ATTCE_12957 and tr_A0A195C033_A0A195C033_9HYME_456900 are exactly identical! WARNING: Sequences tr_H2SAH6_H2SAH6_TAKRU_31033 and tr_H3D5A2_H3D5A2_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0E0IFX2_A0A0E0IFX2_ORYNI_4536 and tr_A0A0E0F102_A0A0E0F102_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0IFX2_A0A0E0IFX2_ORYNI_4536 and tr_A0A0E0R2Z6_A0A0E0R2Z6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0IFX2_A0A0E0IFX2_ORYNI_4536 and tr_A0A0D3HH21_A0A0D3HH21_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0IFX2_A0A0E0IFX2_ORYNI_4536 and tr_A0A0E0BEA0_A0A0E0BEA0_9ORYZ_40148 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A100IM49_A0A100IM49_ASPNG_5061 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A146FRI8_A0A146FRI8_9EURO_1069201 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A1L9NFR9_A0A1L9NFR9_ASPTU_767770 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A1L9UCR9_A0A1L9UCR9_9EURO_767769 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A317VNJ3_A0A317VNJ3_9EURO_1448314 are exactly identical! WARNING: Sequences sp_A2QU77_SSN3_ASPNC_425011 and tr_A0A319ANA1_A0A319ANA1_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A0A212EH84_A0A212EH84_DANPL_278856 and tr_A0A212F319_A0A212F319_DANPL_278856 are exactly identical! WARNING: Sequences tr_I1QWC0_I1QWC0_ORYGL_4538 and sp_Q336M2_CDKE1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G3SYU2_G3SYU2_LOXAF_9785 and tr_A0A2Y9E3R1_A0A2Y9E3R1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0ZMS8_H0ZMS8_TAEGU_59729 and tr_U3K1X5_U3K1X5_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZMS8_H0ZMS8_TAEGU_59729 and tr_A0A0Q3LUG4_A0A0Q3LUG4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F2SYU9_F2SYU9_TRIRC_559305 and tr_A0A178F5G6_A0A178F5G6_TRIRU_5551 are exactly identical! WARNING: Sequences tr_A0A0D2YBQ2_A0A0D2YBQ2_FUSO4_426428 and tr_N4U4D7_N4U4D7_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_A0A0D2YBQ2_A0A0D2YBQ2_FUSO4_426428 and tr_A0A2H3TNJ0_A0A2H3TNJ0_FUSOX_5507 are exactly identical! WARNING: Sequences tr_V2XGN4_V2XGN4_MONRO_1381753 and tr_A0A0W0FZL5_A0A0W0FZL5_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2RF62_W2RF62_PHYPN_761204 and tr_A0A0W8D1L3_A0A0W8D1L3_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RF62_W2RF62_PHYPN_761204 and tr_W2M2M5_W2M2M5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B5YXB7_A0A3B5YXB7_WHEAT_4565 and tr_W4ZQI0_W4ZQI0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015IHG0_A0A015IHG0_9GLOM_1432141 and tr_A0A2I1GQ14_A0A2I1GQ14_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015IHG0_A0A015IHG0_9GLOM_1432141 and tr_A0A2H5RP68_A0A2H5RP68_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A044SIC5_A0A044SIC5_ONCVO_6282 and tr_A0A182E211_A0A182E211_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067GMG8_A0A067GMG8_CITSI_2711 and tr_V4TGQ2_V4TGQ2_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A084QVL9_A0A084QVL9_STAC4_1283841 and tr_A0A084RM20_A0A084RM20_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A096NFM6_A0A096NFM6_PAPAN_9555 and tr_A0A0D9RSL3_A0A0D9RSL3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NFM6_A0A096NFM6_PAPAN_9555 and tr_A0A2K5N5Y5_A0A2K5N5Y5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NFM6_A0A096NFM6_PAPAN_9555 and tr_A0A2K6BI00_A0A2K6BI00_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NFM6_A0A096NFM6_PAPAN_9555 and tr_A0A2K5ZN99_A0A2K5ZN99_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A078J2P1_A0A078J2P1_BRANA_3708 and tr_A0A0D3E229_A0A0D3E229_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4VFQ7_V4VFQ7_9ROSI_85681 and tr_A0A2H5NV91_A0A2H5NV91_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067CHN3_A0A067CHN3_SAPPC_695850 and tr_T0RZT5_T0RZT5_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0L1JBU1_A0A0L1JBU1_ASPNO_1509407 and tr_A0A2G7GA65_A0A2G7GA65_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0M9EX81_A0A0M9EX81_FUSLA_179993 and tr_I1RKR8_I1RKR8_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0M9EX81_A0A0M9EX81_FUSLA_179993 and tr_A0A2T4GXG7_A0A2T4GXG7_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0G4KLM3_A0A0G4KLM3_9PEZI_100787 and tr_A0A0G4N0D5_A0A0G4N0D5_9PEZI_100787 are exactly identical! WARNING: Sequences tr_A0A0S7DFW9_A0A0S7DFW9_9EURO_293939 and tr_A0A2I1BTV2_A0A2I1BTV2_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A091EHH0_A0A091EHH0_CORBR_85066 and tr_A0A093SFL4_A0A093SFL4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091FLV1_A0A091FLV1_CORBR_85066 and tr_A0A091GD48_A0A091GD48_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0N0BJ95_A0A0N0BJ95_9HYME_166423 and tr_A0A2A3EAG1_A0A2A3EAG1_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A091V053_A0A091V053_NIPNI_128390 and tr_A0A0A0B462_A0A0A0B462_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V1CV24_A0A0V1CV24_TRIBR_45882 and tr_A0A0V0WW20_A0A0V0WW20_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CV24_A0A0V1CV24_TRIBR_45882 and tr_A0A0V0VEA8_A0A0V0VEA8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CV24_A0A0V1CV24_TRIBR_45882 and tr_A0A0V1LMS5_A0A0V1LMS5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CV24_A0A0V1CV24_TRIBR_45882 and tr_A0A0V0U3B6_A0A0V0U3B6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1E5X2_A0A0V1E5X2_TRIPS_6337 and tr_A0A0V1MV46_A0A0V1MV46_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A151WHG6_A0A151WHG6_9HYME_64791 and tr_A0A195BFW8_A0A195BFW8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A2G5IC62_A0A2G5IC62_CERBT_122368 and tr_A0A2S6C2D2_A0A2S6C2D2_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A367XLQ9_A0A367XLQ9_9ASCO_5486 and tr_A0A367YNB0_A0A367YNB0_9ASCO_5486 are exactly identical! WARNING: Duplicate sequences found: 95 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.reduced.phy Alignment comprises 1 partitions and 464 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 464 Gaps: 20.04 % Invariant sites: 0.86 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/3_mltree/P49336.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 116 / 9280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -126496.185438 [00:00:00 -126496.185438] Initial branch length optimization [00:00:01 -124424.473153] Model parameter optimization (eps = 0.100000) [00:00:28] Tree #1, final logLikelihood: -124104.119347 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.221468,0.219972) (0.226221,0.333651) (0.201302,0.827333) (0.351009,2.020633) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P49336/4_raxmlng_ancestral/P49336.raxml.log Analysis started: 02-Jun-2021 18:20:41 / finished: 02-Jun-2021 18:21:14 Elapsed time: 33.443 seconds Consumed energy: 2.227 Wh