RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 14-Jul-2021 14:49:39 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/2_msa/P48058_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/3_mltree/P48058.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626263379 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/2_msa/P48058_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 902 sites WARNING: Sequences tr_M3Y321_M3Y321_MUSPF_9669 and tr_A0A287AEG6_A0A287AEG6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y321_M3Y321_MUSPF_9669 and tr_F1MBY1_F1MBY1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YTJ1_M3YTJ1_MUSPF_9669 and tr_F1PWT6_F1PWT6_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q9VDH5_Q9VDH5_DROME_7227 and tr_B4II60_B4II60_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_A0A2I2Z6L3_A0A2I2Z6L3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_C7G3L5_C7G3L5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_I3MFS2_I3MFS2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and sp_Q13002_GRIK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_H9EM65_H9EM65_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_F7IBF1_F7IBF1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_A0A2K5LJ69_A0A2K5LJ69_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GH36_A0A2I3GH36_NOMLE_61853 and tr_A0A2K6BKA4_A0A2K6BKA4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R3B7_G1R3B7_NOMLE_61853 and sp_P42262_GRIA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R3B7_G1R3B7_NOMLE_61853 and tr_F7HC11_F7HC11_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R3B7_G1R3B7_NOMLE_61853 and tr_A0A096MWL5_A0A096MWL5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R6G6_G1R6G6_NOMLE_61853 and tr_A0A2J8XXC2_A0A2J8XXC2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R6G6_G1R6G6_NOMLE_61853 and tr_A0A2R8ZUD5_A0A2R8ZUD5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1PBG8_G1PBG8_MYOLU_59463 and tr_F6VNJ0_F6VNJ0_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3RAA1_G3RAA1_GORGO_9595 and tr_H2PEL6_H2PEL6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RAA1_G3RAA1_GORGO_9595 and tr_H2QQC5_H2QQC5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RAA1_G3RAA1_GORGO_9595 and tr_A0A2K5M0L7_A0A2K5M0L7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RAA1_G3RAA1_GORGO_9595 and tr_A0A2K5ZBU0_A0A2K5ZBU0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RAA1_G3RAA1_GORGO_9595 and tr_A0A2R9BL79_A0A2R9BL79_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8WWH6_A0A2J8WWH6_PONAB_9601 and sp_P42263_GRIA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8WWH6_A0A2J8WWH6_PONAB_9601 and tr_A0A096N5U4_A0A096N5U4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8WWH6_A0A2J8WWH6_PONAB_9601 and tr_A0A2K6C368_A0A2K6C368_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1TGQ2_G1TGQ2_RABIT_9986 and tr_F6QNJ8_F6QNJ8_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1TGQ2_G1TGQ2_RABIT_9986 and tr_W5P8A7_W5P8A7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1U6F6_G1U6F6_RABIT_9986 and tr_A0A2Y9IJY5_A0A2Y9IJY5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and tr_F6XW64_F6XW64_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and sp_P42261_GRIA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and tr_G1M786_G1M786_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and tr_G7P8R7_G7P8R7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and tr_A0A2I2USC9_A0A2I2USC9_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1PDP9_F1PDP9_CANLF_9615 and tr_A0A384C725_A0A384C725_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1PHA8_F1PHA8_CANLF_9615 and tr_A0A2Y9K6Q2_A0A2Y9K6Q2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3T979_A0A2I3T979_PANTR_9598 and tr_A0A2I3MXB9_A0A2I3MXB9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3T979_A0A2I3T979_PANTR_9598 and tr_A0A2K5M9E6_A0A2K5M9E6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q5IS46_GRIK4_PANTR_9598 and sp_Q16099_GRIK4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5PVI2_W5PVI2_SHEEP_9940 and tr_A0A2U4CHR8_A0A2U4CHR8_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5PVI2_W5PVI2_SHEEP_9940 and tr_A0A2Y9MEW1_A0A2Y9MEW1_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5PVI2_W5PVI2_SHEEP_9940 and tr_A0A2Y9SYW0_A0A2Y9SYW0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M4A267_M4A267_XIPMA_8083 and tr_A0A087X543_A0A087X543_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A1D5RJF9_A0A1D5RJF9_MACMU_9544 and tr_A0A2K5N2C7_A0A2K5N2C7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5RJF9_A0A1D5RJF9_MACMU_9544 and tr_A0A2K5ZIF1_A0A2K5ZIF1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5RJF9_A0A1D5RJF9_MACMU_9544 and tr_A0A2R9A4P9_A0A2R9A4P9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7AGS3_F7AGS3_MACMU_9544 and tr_A0A0D9S295_A0A0D9S295_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7AGS3_F7AGS3_MACMU_9544 and tr_A0A2K6DC70_A0A2K6DC70_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1RYR0_F1RYR0_PIG_9823 and tr_L5JKX4_L5JKX4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1L0S8_G1L0S8_AILME_9646 and tr_A0A2Y9K518_A0A2Y9K518_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1L0S8_G1L0S8_AILME_9646 and tr_A0A384C0F1_A0A384C0F1_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1M8E3_G1M8E3_AILME_9646 and tr_A0A2I2U7P0_A0A2I2U7P0_FELCA_9685 are exactly identical! WARNING: Sequences tr_G7PNL9_G7PNL9_MACFA_9541 and tr_A0A096MR99_A0A096MR99_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PNL9_G7PNL9_MACFA_9541 and tr_A0A2K5N3Y1_A0A2K5N3Y1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PNL9_G7PNL9_MACFA_9541 and tr_A0A2K5YF63_A0A2K5YF63_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7Q3M1_G7Q3M1_MACFA_9541 and tr_A0A2K5MNX8_A0A2K5MNX8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7Q3M1_G7Q3M1_MACFA_9541 and tr_A0A2R8ZQ00_A0A2R8ZQ00_PANPA_9597 are exactly identical! WARNING: Sequences tr_F1MG21_F1MG21_BOVIN_9913 and tr_A0A337S2R5_A0A337S2R5_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1MG21_F1MG21_BOVIN_9913 and tr_A0A2Y9L356_A0A2Y9L356_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1MG21_F1MG21_BOVIN_9913 and tr_A0A384D8V4_A0A384D8V4_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3MW59_A0A2I3MW59_PAPAN_9555 and tr_A0A2K5YEJ2_A0A2K5YEJ2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091DHR5_A0A091DHR5_FUKDA_885580 and tr_A0A0D9RQB5_A0A0D9RQB5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0D9S7R9_A0A0D9S7R9_CHLSB_60711 and tr_A0A2K6CHA5_A0A2K6CHA5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091EIB5_A0A091EIB5_CORBR_85066 and tr_A0A093SB17_A0A093SB17_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091F134_A0A091F134_CORBR_85066 and tr_A0A091ISM6_A0A091ISM6_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F134_A0A091F134_CORBR_85066 and tr_A0A091W1F9_A0A091W1F9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F134_A0A091F134_CORBR_85066 and tr_A0A091G917_A0A091G917_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091F134_A0A091F134_CORBR_85066 and tr_A0A093GEY1_A0A093GEY1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091INJ8_A0A091INJ8_EGRGA_188379 and tr_A0A091V702_A0A091V702_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091INJ8_A0A091INJ8_EGRGA_188379 and tr_A0A087REV3_A0A087REV3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091INJ8_A0A091INJ8_EGRGA_188379 and tr_A0A0A0B1W8_A0A0A0B1W8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J2D2_A0A091J2D2_EGRGA_188379 and tr_A0A091VMF1_A0A091VMF1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J2D2_A0A091J2D2_EGRGA_188379 and tr_A0A087QUE3_A0A087QUE3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JB59_A0A091JB59_EGRGA_188379 and tr_A0A091VM91_A0A091VM91_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JB59_A0A091JB59_EGRGA_188379 and tr_A0A0A0A7T4_A0A0A0A7T4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JCX4_A0A091JCX4_EGRGA_188379 and tr_A0A091VVX4_A0A091VVX4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHV7_A0A091JHV7_EGRGA_188379 and tr_A0A091GQD3_A0A091GQD3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A087R9W2_A0A087R9W2_APTFO_9233 and tr_A0A0A0B332_A0A0A0B332_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091WFF2_A0A091WFF2_OPIHO_30419 and tr_A0A0A0AVN2_A0A0A0AVN2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V1NX75_A0A0V1NX75_9BILA_92180 and tr_A0A0V0TSM8_A0A0V0TSM8_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A2U4ANA3_A0A2U4ANA3_TURTR_9739 and tr_A0A2Y9P6V8_A0A2Y9P6V8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VHX9_A0A2U3VHX9_ODORO_9708 and tr_A0A384BNB1_A0A384BNB1_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2Y9LHC8_A0A2Y9LHC8_DELLE_9749 and tr_A0A2Y9SCV8_A0A2Y9SCV8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9LHC8_A0A2Y9LHC8_DELLE_9749 and tr_A0A383Z3N2_A0A383Z3N2_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 84 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.reduced.phy Alignment comprises 1 partitions and 902 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 902 Gaps: 11.63 % Invariant sites: 0.78 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/3_mltree/P48058.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 226 / 18080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -209012.111719 [00:00:00 -209012.111719] Initial branch length optimization [00:00:02 -204558.830551] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -204132.340763 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.186581,0.261408) (0.191061,0.389714) (0.379286,0.908431) (0.243072,2.189522) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P48058/4_raxmlng_ancestral/P48058.raxml.log Analysis started: 14-Jul-2021 14:49:39 / finished: 14-Jul-2021 14:50:29 Elapsed time: 50.796 seconds