RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 05:16:02 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/2_msa/P47870_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/2_msa/P47870_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 243 sites

WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and sp_Q08832_GBRB3_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_B4JLF9_B4JLF9_DROGR_7222 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_B4NPE8_B4NPE8_DROWI_7260 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_B4M3E6_B4M3E6_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_A0A0Q9WP23_A0A0Q9WP23_DROMO_7230 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_A0A0M4EZJ5_A0A0M4EZJ5_DROBS_30019 are exactly identical!
WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and tr_A0A1W4V464_A0A1W4V464_DROFC_30025 are exactly identical!
WARNING: Sequences tr_A0A2R8QBZ2_A0A2R8QBZ2_DANRE_7955 and tr_F1Q6Y8_F1Q6Y8_DANRE_7955 are exactly identical!
WARNING: Sequences tr_F1Q4Y6_F1Q4Y6_DANRE_7955 and tr_A0A0N8JYP6_A0A0N8JYP6_9TELE_113540 are exactly identical!
WARNING: Sequences tr_F1Q4Y6_F1Q4Y6_DANRE_7955 and tr_A0A2D0SYL7_A0A2D0SYL7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_F1R406_F1R406_DANRE_7955 and tr_A0A3B1JX75_A0A3B1JX75_ASTMX_7994 are exactly identical!
WARNING: Sequences tr_A0A1D5P8L7_A0A1D5P8L7_CHICK_9031 and tr_G1NAR0_G1NAR0_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5PI05_A0A1D5PI05_CHICK_9031 and tr_G1NNN4_G1NNN4_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1BQL4_E1BQL4_CHICK_9031 and tr_G1MTU7_G1MTU7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_G1NLM8_G1NLM8_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_K7FUE7_K7FUE7_PELSI_13735 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_H0ZQ95_H0ZQ95_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_U3JK02_U3JK02_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A091F1X0_A0A091F1X0_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A093STY1_A0A093STY1_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A091W0Y3_A0A091W0Y3_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A087R749_A0A087R749_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A093JGP3_A0A093JGP3_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A091WEX9_A0A091WEX9_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A099ZDC7_A0A099ZDC7_TINGU_94827 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A091GD35_A0A091GD35_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A0A0AP74_A0A0A0AP74_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A2I0MTW7_A0A2I0MTW7_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A093G7K4_A0A093G7K4_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A1V4JNK1_A0A1V4JNK1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F1ND89_F1ND89_CHICK_9031 and tr_A0A218VBK7_A0A218VBK7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1ND90_F1ND90_CHICK_9031 and tr_G1NLM4_G1NLM4_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F1ND90_F1ND90_CHICK_9031 and tr_A0A226P224_A0A226P224_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NY45_F1NY45_CHICK_9031 and tr_G1MST9_G1MST9_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_G3UNX7_G3UNX7_MELGA_9103 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_K7FUD0_K7FUD0_PELSI_13735 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_H0YT70_H0YT70_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_U3KGE9_U3KGE9_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_U3IZZ9_U3IZZ9_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A0Q3URZ9_A0A0Q3URZ9_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091ET31_A0A091ET31_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091KGB3_A0A091KGB3_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A093PT27_A0A093PT27_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091VEN8_A0A091VEN8_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A087REJ5_A0A087REJ5_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A093K8H5_A0A093K8H5_STRCA_441894 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091VDK4_A0A091VDK4_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091GA53_A0A091GA53_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A0A0A4Y2_A0A0A0A4Y2_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A2I0MA70_A0A2I0MA70_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A093IV10_A0A093IV10_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091IB21_A0A091IB21_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A1V4KUZ7_A0A1V4KUZ7_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A218V2U1_A0A218V2U1_9PASE_299123 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_G1NPJ1_G1NPJ1_MELGA_9103 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_H0ZJC0_H0ZJC0_TAEGU_59729 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_U3JN40_U3JN40_FICAL_59894 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_U3J776_U3J776_ANAPL_8839 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A0Q3XAN9_A0A0Q3XAN9_AMAAE_12930 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091EVY1_A0A091EVY1_CORBR_85066 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091J318_A0A091J318_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091VQB2_A0A091VQB2_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A087R5Y7_A0A087R5Y7_APTFO_9233 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A093JCM5_A0A093JCM5_STRCA_441894 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091WIP7_A0A091WIP7_OPIHO_30419 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091GIN2_A0A091GIN2_9AVES_55661 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A0A0AE65_A0A0A0AE65_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A2I0MLK5_A0A2I0MLK5_COLLI_8932 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A093GJF6_A0A093GJF6_DRYPU_118200 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A091I6H3_A0A091I6H3_CALAN_9244 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A1V4JBD0_A0A1V4JBD0_PATFA_372326 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A218V412_A0A218V412_9PASE_299123 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A226MM96_A0A226MM96_CALSU_9009 are exactly identical!
WARNING: Sequences sp_P19019_GBRB3_CHICK_9031 and tr_A0A226PLV8_A0A226PLV8_COLVI_9014 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_G1N0N4_G1N0N4_MELGA_9103 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_H0Z7E1_H0Z7E1_TAEGU_59729 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_U3K972_U3K972_FICAL_59894 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091ETC6_A0A091ETC6_CORBR_85066 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091IYP8_A0A091IYP8_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A093PSE9_A0A093PSE9_9PASS_328815 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091VA25_A0A091VA25_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A087QUI7_A0A087QUI7_APTFO_9233 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A093HH60_A0A093HH60_STRCA_441894 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091XBN8_A0A091XBN8_OPIHO_30419 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A099ZCE5_A0A099ZCE5_TINGU_94827 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091FNB8_A0A091FNB8_9AVES_55661 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A0A0AQ55_A0A0A0AQ55_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A2I0M4S5_A0A2I0M4S5_COLLI_8932 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A093GS26_A0A093GS26_DRYPU_118200 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A091IHJ7_A0A091IHJ7_CALAN_9244 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A1V4KYT3_A0A1V4KYT3_PATFA_372326 are exactly identical!
WARNING: Sequences sp_P24045_GBRB4_CHICK_9031 and tr_A0A218UTT1_A0A218UTT1_9PASE_299123 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_G3SKE7_G3SKE7_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_H2PD83_H2PD83_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_F1PEG2_F1PEG2_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_H2QPE8_H2QPE8_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_W5Q276_W5Q276_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and sp_P15431_GBRB1_RAT_10116 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_I3MBW0_I3MBW0_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A286X9M5_A0A286X9M5_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and sp_P18505_GBRB1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_G3UKU0_G3UKU0_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_F7IFX8_F7IFX8_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A287AFD9_A0A287AFD9_PIG_9823 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_G1L9J8_G1L9J8_AILME_9646 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_G7P5I7_G7P5I7_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and sp_P08220_GBRB1_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2I2U1S1_A0A2I2U1S1_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A096MTC5_A0A096MTC5_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A0D9RX39_A0A0D9RX39_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A1S3AS43_A0A1S3AS43_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A1S3ELP9_A0A1S3ELP9_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A1U7R4F3_A0A1U7R4F3_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2K5M2W3_A0A2K5M2W3_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2K6BII0_A0A2K6BII0_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2K5ZF27_A0A2K5ZF27_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2R9C4H8_A0A2R9C4H8_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2U3VMT7_A0A2U3VMT7_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2Y9EBE4_A0A2Y9EBE4_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2Y9JQ35_A0A2Y9JQ35_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2Y9MNI4_A0A2Y9MNI4_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A2Y9THJ9_A0A2Y9THJ9_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A384CXZ7_A0A384CXZ7_URSMA_29073 are exactly identical!
WARNING: Sequences sp_P50571_GBRB1_MOUSE_10090 and tr_A0A384A0U7_A0A384A0U7_BALAS_310752 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G1RRN1_G1RRN1_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G3RXD5_G3RXD5_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_H2QTE3_H2QTE3_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_F6XGS7_F6XGS7_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_W5PTC9_W5PTC9_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and sp_P50572_GBRR1_RAT_10116 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_I3M9A5_I3M9A5_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_H0VI13_H0VI13_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and sp_P24046_GBRR1_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_F6W0N4_F6W0N4_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G5AZM3_G5AZM3_HETGA_10181 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G3SX94_G3SX94_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G3WI80_G3WI80_SARHA_9305 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_F6X7M5_F6X7M5_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_G7Q3Q4_G7Q3Q4_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_E1BCQ5_E1BCQ5_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_M3XEV9_M3XEV9_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A096P0A0_A0A096P0A0_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A0D9RXL0_A0A0D9RXL0_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A1S3F783_A0A1S3F783_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A1U7TP78_A0A1U7TP78_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2K5P2R6_A0A2K5P2R6_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2K6AWQ7_A0A2K6AWQ7_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2K5ZDA8_A0A2K5ZDA8_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2U3V6H7_A0A2U3V6H7_TURTR_9739 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2U3W7Y3_A0A2U3W7Y3_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2U3XQS5_A0A2U3XQS5_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2Y9E744_A0A2Y9E744_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A2Y9LF37_A0A2Y9LF37_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P56475_GBRR1_MOUSE_10090 and tr_A0A384B8K7_A0A384B8K7_BALAS_310752 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_M3XNI6_M3XNI6_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2I3HVF2_A0A2I3HVF2_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G1PMC0_G1PMC0_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2I2Y215_A0A2I2Y215_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_H2NML8_H2NML8_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G1SK40_G1SK40_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_J9P3X1_J9P3X1_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2I3T0F6_A0A2I3T0F6_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_F6ZJU6_F6ZJU6_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_W5PHK2_W5PHK2_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and sp_P63079_GBRB3_RAT_10116 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A287D0G0_A0A287D0G0_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_H0XXY1_H0XXY1_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_H0V658_H0V658_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and sp_P28472_GBRB3_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_F6ZKJ4_F6ZKJ4_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G5B3Z3_G5B3Z3_HETGA_10181 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G3SPL9_G3SPL9_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2R8PKS8_A0A2R8PKS8_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A287BK82_A0A287BK82_PIG_9823 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G1LGA5_G1LGA5_AILME_9646 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_G7PAL4_G7PAL4_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_F1MAU5_F1MAU5_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_L5L0A2_L5L0A2_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A337SUQ0_A0A337SUQ0_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2I3MM58_A0A2I3MM58_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A091CQ11_A0A091CQ11_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A0D9R283_A0A0D9R283_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A1S2ZYD5_A0A1S2ZYD5_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A1S3EVL9_A0A1S3EVL9_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A3Q0E5R7_A0A3Q0E5R7_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A1U7QNA6_A0A1U7QNA6_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2K5MKL8_A0A2K5MKL8_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2K6CDS1_A0A2K6CDS1_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2K5YGR4_A0A2K5YGR4_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2R9BWE5_A0A2R9BWE5_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2U4C6X3_A0A2U4C6X3_TURTR_9739 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2U3WY31_A0A2U3WY31_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2U3XA02_A0A2U3XA02_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2Y9DDN0_A0A2Y9DDN0_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2Y9L648_A0A2Y9L648_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2Y9QAB5_A0A2Y9QAB5_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A2Y9S4B9_A0A2Y9S4B9_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A384DBY7_A0A384DBY7_URSMA_29073 are exactly identical!
WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and tr_A0A383ZVN4_A0A383ZVN4_BALAS_310752 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_M3YP67_M3YP67_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_G3RF14_G3RF14_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_G1SYK7_G1SYK7_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_L7N0C0_L7N0C0_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2J8NKG3_A0A2J8NKG3_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_F7FRW7_F7FRW7_ORNAN_9258 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_F7EBG0_F7EBG0_MONDO_13616 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_F6WVB7_F6WVB7_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_I2BJM7_I2BJM7_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and sp_P63138_GBRB2_RAT_10116 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_I3M2B1_I3M2B1_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_H0XPC3_H0XPC3_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_H0VSU8_H0VSU8_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and sp_P47870_GBRB2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and sp_D1LYT2_GBRB2_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_G5ARH5_G5ARH5_HETGA_10181 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_G3VMU6_G3VMU6_SARHA_9305 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_F7DAV1_F7DAV1_CALJA_9483 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A287BG52_A0A287BG52_PIG_9823 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_G7P6T5_G7P6T5_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_E1BFC0_E1BFC0_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_L5L2R9_L5L2R9_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A341ZMF7_A0A341ZMF7_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2I3N1S0_A0A2I3N1S0_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A091DPW0_A0A091DPW0_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A0D9RD87_A0A0D9RD87_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A1S3AP29_A0A1S3AP29_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A1S3G7W2_A0A1S3G7W2_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A3Q0DMG4_A0A3Q0DMG4_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A1U7QE51_A0A1U7QE51_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2K5NFC3_A0A2K5NFC3_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2K6BER5_A0A2K6BER5_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2K5XEM9_A0A2K5XEM9_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2R9C8C8_A0A2R9C8C8_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2U4C636_A0A2U4C636_TURTR_9739 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2U3VC36_A0A2U3VC36_ODORO_9708 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2U3XGY0_A0A2U3XGY0_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2Y9DC37_A0A2Y9DC37_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2Y9IKP5_A0A2Y9IKP5_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2Y9PZG3_A0A2Y9PZG3_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A2Y9RZ34_A0A2Y9RZ34_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A384C705_A0A384C705_URSMA_29073 are exactly identical!
WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A383Z8H0_A0A383Z8H0_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3YCV9_M3YCV9_MUSPF_9669 and tr_G1SEE6_G1SEE6_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3YCV9_M3YCV9_MUSPF_9669 and tr_A0A2Y9KZN2_A0A2Y9KZN2_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YD49_M3YD49_MUSPF_9669 and tr_A0A1S3AE06_A0A1S3AE06_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3YD49_M3YD49_MUSPF_9669 and tr_A0A2Y9L5T4_A0A2Y9L5T4_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YN80_M3YN80_MUSPF_9669 and tr_D2HKP4_D2HKP4_AILME_9646 are exactly identical!
WARNING: Sequences tr_A0A3B3H5D5_A0A3B3H5D5_ORYLA_8090 and tr_A0A3B5R5U6_A0A3B5R5U6_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3H5D5_A0A3B3H5D5_ORYLA_8090 and tr_I3J6N7_I3J6N7_ORENI_8128 are exactly identical!
WARNING: Sequences tr_A0A3B3H5D5_A0A3B3H5D5_ORYLA_8090 and tr_A0A087Y7K5_A0A087Y7K5_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B3H5D5_A0A3B3H5D5_ORYLA_8090 and tr_A0A2I4CJL8_A0A2I4CJL8_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A3B3HT29_A0A3B3HT29_ORYLA_8090 and tr_M4A460_M4A460_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_A0A3B3HT29_A0A3B3HT29_ORYLA_8090 and tr_A0A087XTU4_A0A087XTU4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2MUD6_H2MUD6_ORYLA_8090 and tr_A0A3B5PYI0_A0A3B5PYI0_XIPMA_8083 are exactly identical!
WARNING: Sequences tr_H2MUD6_H2MUD6_ORYLA_8090 and tr_I3IZS9_I3IZS9_ORENI_8128 are exactly identical!
WARNING: Sequences tr_H2MUD6_H2MUD6_ORYLA_8090 and tr_A0A087Y8C4_A0A087Y8C4_POEFO_48698 are exactly identical!
WARNING: Sequences tr_H2MUD6_H2MUD6_ORYLA_8090 and tr_A0A2U9CSS0_A0A2U9CSS0_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G1QH20_G1QH20_NOMLE_61853 and tr_A0A2I2Z0G4_A0A2I2Z0G4_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QH20_G1QH20_NOMLE_61853 and tr_A0A2I3RJN7_A0A2I3RJN7_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QH20_G1QH20_NOMLE_61853 and sp_O14764_GBRD_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QH20_G1QH20_NOMLE_61853 and tr_A0A2R9B726_A0A2R9B726_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1QHD9_G1QHD9_NOMLE_61853 and tr_G3QMM3_G3QMM3_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1QHD9_G1QHD9_NOMLE_61853 and tr_A0A2J8LXV6_A0A2J8LXV6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1QHD9_G1QHD9_NOMLE_61853 and sp_O00591_GBRP_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1QHD9_G1QHD9_NOMLE_61853 and tr_A0A2R8ZJ77_A0A2R8ZJ77_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_G3QU31_G3QU31_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_H2PES7_H2PES7_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_H2QQG1_H2QQG1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and sp_O75311_GLRA3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_G7P6K5_G7P6K5_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_A0A1S3FWM0_A0A1S3FWM0_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_A0A1U7QB43_A0A1U7QB43_MESAU_10036 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_A0A2K5LG11_A0A2K5LG11_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1R4P9_G1R4P9_NOMLE_61853 and tr_A0A2K5XCQ4_A0A2K5XCQ4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1P316_G1P316_MYOLU_59463 and tr_G1LJF8_G1LJF8_AILME_9646 are exactly identical!
WARNING: Sequences tr_G3R834_G3R834_GORGO_9595 and sp_A8MPY1_GBRR3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A2I3SLS0_A0A2I3SLS0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and sp_P28476_GBRR2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_F6X6H8_F6X6H8_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A2I3M9K4_A0A2I3M9K4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A0D9RXK2_A0A0D9RXK2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A2K5NGH9_A0A2K5NGH9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A2K6BP23_A0A2K6BP23_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3RC21_G3RC21_GORGO_9595 and tr_A0A2K5Z2N2_A0A2K5Z2N2_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and tr_H2QZ89_H2QZ89_PANTR_9598 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and sp_Q9UN88_GBRT_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and tr_G7Q1Y1_G7Q1Y1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and tr_A0A096NQE6_A0A096NQE6_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and tr_A0A2K6CCV2_A0A2K6CCV2_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2PX36_H2PX36_PONAB_9601 and tr_A0A2R9ALH2_A0A2R9ALH2_PANPA_9597 are exactly identical!
WARNING: Sequences sp_O18276_GBRB_CAEEL_6239 and tr_E3LWF4_E3LWF4_CAERE_31234 are exactly identical!
WARNING: Sequences tr_E2R4R0_E2R4R0_CANLF_9615 and tr_G3SX97_G3SX97_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_E2R4R0_E2R4R0_CANLF_9615 and tr_L5JPM1_L5JPM1_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_E2R4R0_E2R4R0_CANLF_9615 and tr_M3WBV9_M3WBV9_FELCA_9685 are exactly identical!
WARNING: Sequences tr_E2RS87_E2RS87_CANLF_9615 and tr_M3W0Y7_M3W0Y7_FELCA_9685 are exactly identical!
WARNING: Sequences tr_E2RS87_E2RS87_CANLF_9615 and tr_A0A2U3XVN6_A0A2U3XVN6_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_F1Q344_F1Q344_CANLF_9615 and tr_A0A2U3WFI6_A0A2U3WFI6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_A0A2J8MY57_A0A2J8MY57_PANTR_9598 and tr_A0A2R9BJ01_A0A2R9BJ01_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F7A710_F7A710_MONDO_13616 and tr_G3W0A7_G3W0A7_SARHA_9305 are exactly identical!
WARNING: Sequences tr_W5NZB2_W5NZB2_SHEEP_9940 and sp_Q5EA06_GBRP_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PHK4_W5PHK4_SHEEP_9940 and tr_F1RQB7_F1RQB7_PIG_9823 are exactly identical!
WARNING: Sequences tr_W5PHK4_W5PHK4_SHEEP_9940 and tr_A0A1S3A3P5_A0A1S3A3P5_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_W5PTC1_W5PTC1_SHEEP_9940 and tr_I3LKA9_I3LKA9_PIG_9823 are exactly identical!
WARNING: Sequences tr_W5PTC1_W5PTC1_SHEEP_9940 and tr_G5E635_G5E635_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PTC1_W5PTC1_SHEEP_9940 and sp_Q0II76_GBRR2_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P18506_GBRD_RAT_10116 and tr_A0A1U7QRE2_A0A1U7QRE2_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A3B5Q7B3_A0A3B5Q7B3_XIPMA_8083 and tr_A0A096MF96_A0A096MF96_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5RB78_A0A3B5RB78_XIPMA_8083 and tr_H2T221_H2T221_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B5RB78_A0A3B5RB78_XIPMA_8083 and tr_A0A087Y6W9_A0A087Y6W9_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5RBF6_A0A3B5RBF6_XIPMA_8083 and tr_A0A087XD09_A0A087XD09_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A3B5RDP4_A0A3B5RDP4_XIPMA_8083 and tr_A0A087YDU8_A0A087YDU8_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZRW3_M3ZRW3_XIPMA_8083 and tr_A0A087YMJ2_A0A087YMJ2_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M3ZT33_M3ZT33_XIPMA_8083 and tr_A0A087Y937_A0A087Y937_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A4E1_M4A4E1_XIPMA_8083 and tr_I3K561_I3K561_ORENI_8128 are exactly identical!
WARNING: Sequences tr_M4A4E1_M4A4E1_XIPMA_8083 and tr_A0A087XZF6_A0A087XZF6_POEFO_48698 are exactly identical!
WARNING: Sequences tr_M4A4E1_M4A4E1_XIPMA_8083 and tr_A0A2I4B9A2_A0A2I4B9A2_9TELE_52670 are exactly identical!
WARNING: Sequences tr_M4A4E1_M4A4E1_XIPMA_8083 and tr_A0A2U9C9B1_A0A2U9C9B1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_M4ADN9_M4ADN9_XIPMA_8083 and tr_A0A2I4C5I0_A0A2I4C5I0_9TELE_52670 are exactly identical!
WARNING: Sequences tr_A0A158NBY7_A0A158NBY7_ATTCE_12957 and tr_A0A151IUQ8_A0A151IUQ8_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NBY7_A0A158NBY7_ATTCE_12957 and tr_A0A195BFV1_A0A195BFV1_9HYME_520822 are exactly identical!
WARNING: Sequences tr_H2SLE7_H2SLE7_TAKRU_31033 and tr_H3CU54_H3CU54_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2SYG5_H2SYG5_TAKRU_31033 and tr_H3DIT8_H3DIT8_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H2SYG5_H2SYG5_TAKRU_31033 and tr_A0A2U9CJQ6_A0A2U9CJQ6_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_H2UCD4_H2UCD4_TAKRU_31033 and tr_H3DA78_H3DA78_TETNG_99883 are exactly identical!
WARNING: Sequences tr_F6QDC4_F6QDC4_MACMU_9544 and tr_A0A2I3M9F3_A0A2I3M9F3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6QDC4_F6QDC4_MACMU_9544 and tr_A0A2K5M546_A0A2K5M546_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6QDC4_F6QDC4_MACMU_9544 and tr_A0A2K6DD01_A0A2K6DD01_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6QDC4_F6QDC4_MACMU_9544 and tr_A0A2K5ZWH4_A0A2K5ZWH4_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A096NU75_A0A096NU75_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A0D9R0Z5_A0A0D9R0Z5_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K5NKY9_A0A2K5NKY9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K6BW08_A0A2K6BW08_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K5YI30_A0A2K5YI30_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_G7P6V7_G7P6V7_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_A0A2I3MQF3_A0A2I3MQF3_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_A0A0D9RC27_A0A0D9RC27_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_A0A2K5MZZ4_A0A2K5MZZ4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_A0A2K6E235_A0A2K6E235_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F6ZWI9_F6ZWI9_MACMU_9544 and tr_A0A2K5XI67_A0A2K5XI67_MANLE_9568 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_U3J7Y6_U3J7Y6_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A0Q3PX68_A0A0Q3PX68_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A091JZP0_A0A091JZP0_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A091X7D7_A0A091X7D7_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A087R748_A0A087R748_APTFO_9233 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A091XMF8_A0A091XMF8_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A2I0MUG8_A0A2I0MUG8_COLLI_8932 are exactly identical!
WARNING: Sequences tr_K7FT66_K7FT66_PELSI_13735 and tr_A0A1V4JM72_A0A1V4JM72_PATFA_372326 are exactly identical!
WARNING: Sequences tr_H3CZM1_H3CZM1_TETNG_99883 and tr_A0A2U9B8T1_A0A2U9B8T1_SCOMX_52904 are exactly identical!
WARNING: Sequences tr_G3ST97_G3ST97_LOXAF_9785 and tr_A0A3Q0EBJ7_A0A3Q0EBJ7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3ST97_G3ST97_LOXAF_9785 and tr_A0A2U3YZ22_A0A2U3YZ22_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_H0YXP0_H0YXP0_TAEGU_59729 and tr_U3K4B8_U3K4B8_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0YXP0_H0YXP0_TAEGU_59729 and tr_A0A0Q3T4Y3_A0A0Q3T4Y3_AMAAE_12930 are exactly identical!
WARNING: Sequences tr_H0YXP0_H0YXP0_TAEGU_59729 and tr_A0A218UQY2_A0A218UQY2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_U3JK16_U3JK16_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A091F6V8_A0A091F6V8_CORBR_85066 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A091JG35_A0A091JG35_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A093Q5K5_A0A093Q5K5_9PASS_328815 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A091VWU9_A0A091VWU9_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A087RAD1_A0A087RAD1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A099ZDU8_A0A099ZDU8_TINGU_94827 are exactly identical!
WARNING: Sequences tr_H0ZDC9_H0ZDC9_TAEGU_59729 and tr_A0A0A0AH20_A0A0A0AH20_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_H0ZFQ9_H0ZFQ9_TAEGU_59729 and tr_A0A218V8D5_A0A218V8D5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZTF5_H0ZTF5_TAEGU_59729 and tr_U3JFW6_U3JFW6_FICAL_59894 are exactly identical!
WARNING: Sequences tr_H0ZTF5_H0ZTF5_TAEGU_59729 and tr_A0A2I0MLH2_A0A2I0MLH2_COLLI_8932 are exactly identical!
WARNING: Sequences tr_H0ZTF5_H0ZTF5_TAEGU_59729 and tr_A0A1V4JCD8_A0A1V4JCD8_PATFA_372326 are exactly identical!
WARNING: Sequences tr_F4WHV8_F4WHV8_ACREC_103372 and tr_A0A195FL86_A0A195FL86_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A4IIK0_A4IIK0_XENTR_8364 and tr_A0A1L8H8U2_A0A1L8H8U2_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F6RCP6_F6RCP6_XENTR_8364 and tr_A0A1L8G9E8_A0A1L8G9E8_XENLA_8355 are exactly identical!
WARNING: Sequences tr_F1RRX8_F1RRX8_PIG_9823 and tr_A0A2Y9FAW2_A0A2Y9FAW2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A8XMN9_A8XMN9_CAEBR_6238 and tr_A0A2G5UNR5_A0A2G5UNR5_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_W5L5J4_W5L5J4_ASTMX_7994 and tr_A0A2D0RQ25_A0A2D0RQ25_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_W5LBT9_W5LBT9_ASTMX_7994 and tr_A0A2D0QMF8_A0A2D0QMF8_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A151MTU6_A0A151MTU6_ALLMI_8496 and tr_A0A1U7S5B8_A0A1U7S5B8_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151MTW6_A0A151MTW6_ALLMI_8496 and tr_A0A099ZDD3_A0A099ZDD3_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A151MTW6_A0A151MTW6_ALLMI_8496 and tr_A0A1U7RJP9_A0A1U7RJP9_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151N3R4_A0A151N3R4_ALLMI_8496 and tr_A0A3Q0HC87_A0A3Q0HC87_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NMP9_A0A151NMP9_ALLMI_8496 and tr_A0A1U7RXI3_A0A1U7RXI3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NXD8_A0A151NXD8_ALLMI_8496 and tr_A0A1U7RBU3_A0A1U7RBU3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091ISZ6_A0A091ISZ6_EGRGA_188379 and tr_A0A091UUZ5_A0A091UUZ5_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091ISZ6_A0A091ISZ6_EGRGA_188379 and tr_A0A091W646_A0A091W646_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091ISZ6_A0A091ISZ6_EGRGA_188379 and tr_A0A2I0M3F9_A0A2I0M3F9_COLLI_8932 are exactly identical!
WARNING: Sequences tr_A0A091ISZ6_A0A091ISZ6_EGRGA_188379 and tr_A0A1V4KNP3_A0A1V4KNP3_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A091JC21_A0A091JC21_EGRGA_188379 and tr_A0A091W9V0_A0A091W9V0_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_A0A091JC21_A0A091JC21_EGRGA_188379 and tr_A0A091WR25_A0A091WR25_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_A0A091JC21_A0A091JC21_EGRGA_188379 and tr_A0A0A0ATU3_A0A0A0ATU3_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A194RW19_A0A194RW19_PAPMA_76193 and tr_A0A194PD82_A0A194PD82_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A093HCW1_A0A093HCW1_STRCA_441894 and tr_A0A0A0AT11_A0A0A0AT11_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A093HUQ1_A0A093HUQ1_STRCA_441894 and tr_A0A099Z6D5_A0A099Z6D5_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A091WJE8_A0A091WJE8_OPIHO_30419 and tr_A0A0A0A6T6_A0A0A0A6T6_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A091G282_A0A091G282_9AVES_55661 and tr_A0A091II89_A0A091II89_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A0L7R7A8_A0A0L7R7A8_9HYME_597456 and tr_A0A154PC31_A0A154PC31_9HYME_178035 are exactly identical!
WARNING: Sequences tr_A0A1S3ILW8_A0A1S3ILW8_LINUN_7574 and tr_A0A1S3JMD5_A0A1S3JMD5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3L0E8_A0A1S3L0E8_SALSA_8030 and tr_A0A1S3RI44_A0A1S3RI44_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3L0E8_A0A1S3L0E8_SALSA_8030 and tr_A0A060XEQ7_A0A060XEQ7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3LMS8_A0A1S3LMS8_SALSA_8030 and tr_A0A060W8N5_A0A060W8N5_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3M995_A0A1S3M995_SALSA_8030 and tr_A0A060WS95_A0A060WS95_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3M9G5_A0A1S3M9G5_SALSA_8030 and tr_A0A1S3S7Y5_A0A1S3S7Y5_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3MDE3_A0A1S3MDE3_SALSA_8030 and tr_B5X1A9_B5X1A9_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3MDE3_A0A1S3MDE3_SALSA_8030 and tr_A0A060W3D0_A0A060W3D0_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3MRF8_A0A1S3MRF8_SALSA_8030 and tr_A0A1S3MVC6_A0A1S3MVC6_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3MRF8_A0A1S3MRF8_SALSA_8030 and tr_A0A060X133_A0A060X133_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3MRF8_A0A1S3MRF8_SALSA_8030 and tr_A0A060X280_A0A060X280_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3R4Z7_A0A1S3R4Z7_SALSA_8030 and tr_A0A1S3SP16_A0A1S3SP16_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3R4Z7_A0A1S3R4Z7_SALSA_8030 and tr_A0A060VT12_A0A060VT12_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3RFP4_A0A1S3RFP4_SALSA_8030 and tr_A0A060W4H7_A0A060W4H7_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3RMK7_A0A1S3RMK7_SALSA_8030 and tr_A0A060Y731_A0A060Y731_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3SMQ4_A0A1S3SMQ4_SALSA_8030 and tr_A0A060W096_A0A060W096_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A2A2J2Q4_A0A2A2J2Q4_9BILA_2018661 and tr_A0A2A2JTS4_A0A2A2JTS4_9BILA_2018661 are exactly identical!
WARNING: Sequences tr_A0A2D0QJR5_A0A2D0QJR5_ICTPU_7998 and tr_A0A2D0QK10_A0A2D0QK10_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RVV2_A0A2D0RVV2_ICTPU_7998 and tr_A0A2D0RWR2_A0A2D0RWR2_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0S688_A0A2D0S688_ICTPU_7998 and tr_A0A2D0S693_A0A2D0S693_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U4BXC3_A0A2U4BXC3_TURTR_9739 and tr_A0A2Y9Q5M0_A0A2Y9Q5M0_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BXC3_A0A2U4BXC3_TURTR_9739 and tr_A0A383YTU3_A0A383YTU3_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 416

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.reduced.phy

Alignment comprises 1 partitions and 243 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 243 / 243
Gaps: 1.39 %
Invariant sites: 3.29 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 243 / 19440
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -309674.624078] Initial branch length optimization
[00:00:06 -240951.147679] Model parameter optimization (eps = 10.000000)
[00:01:24 -240433.983468] AUTODETECT spr round 1 (radius: 5)
[00:04:33 -126877.005345] AUTODETECT spr round 2 (radius: 10)
[00:07:52 -76966.783128] AUTODETECT spr round 3 (radius: 15)
[00:10:55 -57624.902044] AUTODETECT spr round 4 (radius: 20)
[00:14:43 -42014.954367] AUTODETECT spr round 5 (radius: 25)
[00:18:30 -35629.166835] SPR radius for FAST iterations: 25 (autodetect)
[00:18:30 -35629.166835] Model parameter optimization (eps = 3.000000)
[00:18:54 -35575.301077] FAST spr round 1 (radius: 25)
[00:21:17 -28704.618139] FAST spr round 2 (radius: 25)
[00:23:15 -27966.973455] FAST spr round 3 (radius: 25)
[00:25:07 -27407.523140] FAST spr round 4 (radius: 25)
[00:26:55 -27142.893067] FAST spr round 5 (radius: 25)
[00:28:55 -27131.067390] FAST spr round 6 (radius: 25)
[00:30:37 -27131.067282] Model parameter optimization (eps = 1.000000)
[00:30:52 -27122.675298] SLOW spr round 1 (radius: 5)
[00:33:01 -27117.280083] SLOW spr round 2 (radius: 5)
[00:35:05 -27116.741765] SLOW spr round 3 (radius: 5)
[00:37:03 -27116.737366] SLOW spr round 4 (radius: 10)
[00:39:05 -27116.737173] SLOW spr round 5 (radius: 15)
[00:42:13 -27116.737171] SLOW spr round 6 (radius: 20)
[00:46:53 -27116.737169] SLOW spr round 7 (radius: 25)
[00:53:07 -27116.737167] Model parameter optimization (eps = 0.100000)

[00:53:12] [worker #0] ML tree search #1, logLikelihood: -27116.729149

[00:53:13 -309681.150078] Initial branch length optimization
[00:53:18 -239109.711954] Model parameter optimization (eps = 10.000000)
[00:54:09 -238633.299938] AUTODETECT spr round 1 (radius: 5)
[00:57:25 -122254.190776] AUTODETECT spr round 2 (radius: 10)
[01:00:25 -74205.669100] AUTODETECT spr round 3 (radius: 15)
[01:03:01] [worker #4] ML tree search #5, logLikelihood: -27123.118064
[01:03:21] [worker #3] ML tree search #4, logLikelihood: -27120.231006
[01:03:40 -53956.363667] AUTODETECT spr round 4 (radius: 20)
[01:06:51] [worker #1] ML tree search #2, logLikelihood: -27120.537417
[01:07:47 -42665.523549] AUTODETECT spr round 5 (radius: 25)
[01:11:49 -36834.363174] SPR radius for FAST iterations: 25 (autodetect)
[01:11:49 -36834.363174] Model parameter optimization (eps = 3.000000)
[01:12:13 -36816.401717] FAST spr round 1 (radius: 25)
[01:15:09 -28700.053700] FAST spr round 2 (radius: 25)
[01:17:21 -27295.764582] FAST spr round 3 (radius: 25)
[01:19:21 -27172.729256] FAST spr round 4 (radius: 25)
[01:21:08 -27160.655726] FAST spr round 5 (radius: 25)
[01:22:48 -27160.655449] Model parameter optimization (eps = 1.000000)
[01:23:06 -27135.432273] SLOW spr round 1 (radius: 5)
[01:25:10 -27131.862547] SLOW spr round 2 (radius: 5)
[01:27:23 -27127.184374] SLOW spr round 3 (radius: 5)
[01:29:29 -27126.738758] SLOW spr round 4 (radius: 5)
[01:29:50] [worker #2] ML tree search #3, logLikelihood: -27119.204052
[01:31:34 -27126.719448] SLOW spr round 5 (radius: 10)
[01:33:54 -27124.881684] SLOW spr round 6 (radius: 5)
[01:36:33 -27121.283028] SLOW spr round 7 (radius: 5)
[01:38:51 -27120.234397] SLOW spr round 8 (radius: 5)
[01:41:07 -27120.041469] SLOW spr round 9 (radius: 5)
[01:43:12 -27120.041227] SLOW spr round 10 (radius: 10)
[01:45:21 -27120.040918] SLOW spr round 11 (radius: 15)
[01:48:28 -27118.351225] SLOW spr round 12 (radius: 5)
[01:51:07 -27118.350949] SLOW spr round 13 (radius: 10)
[01:53:43 -27118.350837] SLOW spr round 14 (radius: 15)
[01:56:51 -27118.350728] SLOW spr round 15 (radius: 20)
[02:01:56 -27118.350692] SLOW spr round 16 (radius: 25)
[02:03:37] [worker #3] ML tree search #9, logLikelihood: -27119.950259
[02:08:08 -27118.350656] Model parameter optimization (eps = 0.100000)

[02:08:16] [worker #0] ML tree search #6, logLikelihood: -27118.267045

[02:08:16 -311100.842421] Initial branch length optimization
[02:08:20 -241735.424686] Model parameter optimization (eps = 10.000000)
[02:09:17 -241230.432154] AUTODETECT spr round 1 (radius: 5)
[02:12:39 -122355.652264] AUTODETECT spr round 2 (radius: 10)
[02:15:32 -71253.106789] AUTODETECT spr round 3 (radius: 15)
[02:15:59] [worker #4] ML tree search #10, logLikelihood: -27130.702161
[02:18:42 -49008.443500] AUTODETECT spr round 4 (radius: 20)
[02:21:59 -38285.400595] AUTODETECT spr round 5 (radius: 25)
[02:25:34 -36504.858581] SPR radius for FAST iterations: 25 (autodetect)
[02:25:34 -36504.858581] Model parameter optimization (eps = 3.000000)
[02:25:57 -36459.883623] FAST spr round 1 (radius: 25)
[02:27:02] [worker #2] ML tree search #8, logLikelihood: -27123.425760
[02:28:46 -29015.992231] FAST spr round 2 (radius: 25)
[02:31:03 -27289.705537] FAST spr round 3 (radius: 25)
[02:32:58 -27154.372390] FAST spr round 4 (radius: 25)
[02:34:43 -27149.828219] FAST spr round 5 (radius: 25)
[02:36:27 -27149.828023] Model parameter optimization (eps = 1.000000)
[02:36:46 -27139.815324] SLOW spr round 1 (radius: 5)
[02:38:51 -27136.848118] SLOW spr round 2 (radius: 5)
[02:40:54 -27132.488773] SLOW spr round 3 (radius: 5)
[02:42:52 -27132.080631] SLOW spr round 4 (radius: 5)
[02:44:50 -27132.080001] SLOW spr round 5 (radius: 10)
[02:46:57 -27130.895535] SLOW spr round 6 (radius: 5)
[02:49:31 -27128.603113] SLOW spr round 7 (radius: 5)
[02:50:48] [worker #1] ML tree search #7, logLikelihood: -27131.862010
[02:51:59 -27126.115600] SLOW spr round 8 (radius: 5)
[02:54:12 -27125.785048] SLOW spr round 9 (radius: 5)
[02:55:03] [worker #3] ML tree search #14, logLikelihood: -27128.839027
[02:56:24 -27125.784831] SLOW spr round 10 (radius: 10)
[02:58:40 -27125.784792] SLOW spr round 11 (radius: 15)
[03:02:03 -27125.784717] SLOW spr round 12 (radius: 20)
[03:06:28 -27125.784714] SLOW spr round 13 (radius: 25)
[03:07:36] [worker #4] ML tree search #15, logLikelihood: -27123.160749
[03:12:07 -27125.784711] Model parameter optimization (eps = 0.100000)

[03:12:19] [worker #0] ML tree search #11, logLikelihood: -27125.645077

[03:12:19 -314261.534748] Initial branch length optimization
[03:12:23 -244588.200579] Model parameter optimization (eps = 10.000000)
[03:13:12 -244134.925708] AUTODETECT spr round 1 (radius: 5)
[03:16:23 -125649.804837] AUTODETECT spr round 2 (radius: 10)
[03:19:27 -70123.789292] AUTODETECT spr round 3 (radius: 15)
[03:22:45 -46620.404733] AUTODETECT spr round 4 (radius: 20)
[03:26:19 -41352.851585] AUTODETECT spr round 5 (radius: 25)
[03:31:30 -35641.407633] SPR radius for FAST iterations: 25 (autodetect)
[03:31:30 -35641.407633] Model parameter optimization (eps = 3.000000)
[03:31:55 -35604.318356] FAST spr round 1 (radius: 25)
[03:34:33 -28076.741338] FAST spr round 2 (radius: 25)
[03:36:41 -27279.467942] FAST spr round 3 (radius: 25)
[03:38:40 -27163.641634] FAST spr round 4 (radius: 25)
[03:40:36 -27155.717516] FAST spr round 5 (radius: 25)
[03:42:15 -27155.717498] Model parameter optimization (eps = 1.000000)
[03:42:32 -27144.286175] SLOW spr round 1 (radius: 5)
[03:44:30 -27137.862502] SLOW spr round 2 (radius: 5)
[03:46:29 -27133.853460] SLOW spr round 3 (radius: 5)
[03:48:32 -27133.729069] SLOW spr round 4 (radius: 5)
[03:50:31 -27133.728878] SLOW spr round 5 (radius: 10)
[03:52:45 -27133.728864] SLOW spr round 6 (radius: 15)
[03:56:02 -27133.728856] SLOW spr round 7 (radius: 20)
[03:59:38] [worker #1] ML tree search #12, logLikelihood: -27129.678908
[04:00:55 -27133.728844] SLOW spr round 8 (radius: 25)
[04:00:59] [worker #3] ML tree search #19, logLikelihood: -27121.457882
[04:07:54] [worker #2] ML tree search #13, logLikelihood: -27127.645686
[04:08:07 -27133.728844] Model parameter optimization (eps = 0.100000)

[04:08:19] [worker #0] ML tree search #16, logLikelihood: -27133.486270

[04:25:17] [worker #4] ML tree search #20, logLikelihood: -27113.904235
[05:17:49] [worker #2] ML tree search #18, logLikelihood: -27126.684708
[05:26:51] [worker #1] ML tree search #17, logLikelihood: -27120.424407

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.320403,0.448510) (0.314038,0.574694) (0.242284,1.154109) (0.123275,3.213937) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -27113.904235

AIC score: 58237.808470 / AICc score: 8102297.808470 / BIC score: 65241.396664
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=243).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P47870/3_mltree/P47870.raxml.log

Analysis started: 02-Jul-2021 05:16:02 / finished: 02-Jul-2021 10:42:54

Elapsed time: 19611.802 seconds

Consumed energy: 1166.373 Wh (= 6 km in an electric car, or 29 km with an e-scooter!)