RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:18:35 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/2_msa/P46734_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/3_mltree/P46734.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805515 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/2_msa/P46734_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 347 sites WARNING: Sequences tr_B4NUD3_B4NUD3_DROSI_7240 and tr_O62602_O62602_DROME_7227 are exactly identical! WARNING: Sequences tr_B4NUD3_B4NUD3_DROSI_7240 and tr_B4IGM0_B4IGM0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QY07_B4QY07_DROSI_7240 and tr_B4HLI1_B4HLI1_DROSE_7238 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_H0ZGH0_H0ZGH0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A0Q3MA74_A0A0Q3MA74_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A2I0MD87_A0A2I0MD87_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A218V0K5_A0A218V0K5_9PASE_299123 are exactly identical! WARNING: Sequences sp_P31938_MP2K1_MOUSE_10090 and sp_Q01986_MP2K1_RAT_10116 are exactly identical! WARNING: Sequences sp_P31938_MP2K1_MOUSE_10090 and tr_A0A2Y9P0A4_A0A2Y9P0A4_DELLE_9749 are exactly identical! WARNING: Sequences sp_P31938_MP2K1_MOUSE_10090 and tr_A0A2Y9FRV8_A0A2Y9FRV8_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P31938_MP2K1_MOUSE_10090 and tr_A0A383YTE9_A0A383YTE9_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_G3QM92_G3QM92_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_J9P5W6_J9P5W6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2I3RF04_A0A2I3RF04_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_H0XE68_H0XE68_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and sp_Q02750_MP2K1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A1D5QKD3_A0A1D5QKD3_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_U3CZR8_U3CZR8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A287BK75_A0A287BK75_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_Q0VD16_Q0VD16_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_L5K149_L5K149_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_M3X621_M3X621_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2I3LF26_A0A2I3LF26_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A0D9RL74_A0A0D9RL74_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2K5YWG9_A0A2K5YWG9_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2R9A4U3_A0A2R9A4U3_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2U3WY84_A0A2U3WY84_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2U3XED8_A0A2U3XED8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2Y9K7U5_A0A2Y9K7U5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A384DIG4_A0A384DIG4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XX35_M3XX35_MUSPF_9669 and tr_A0A1S2ZQ60_A0A1S2ZQ60_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2I3G2G1_A0A2I3G2G1_NOMLE_61853 and tr_H2QCA7_H2QCA7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G2G1_A0A2I3G2G1_NOMLE_61853 and tr_A0A1D5QAU9_A0A1D5QAU9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and tr_H2NUJ7_H2NUJ7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and sp_P52564_MP2K6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and tr_A0A096NU44_A0A096NU44_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and tr_A0A0D9QWI2_A0A0D9QWI2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and tr_A0A2K5P0S9_A0A2K5P0S9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QQD5_G1QQD5_NOMLE_61853 and tr_A0A2K6CS09_A0A2K6CS09_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1NWW3_G1NWW3_MYOLU_59463 and tr_L5JWT3_L5JWT3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A2I2YYX3_A0A2I2YYX3_GORGO_9595 and sp_P45985_MP2K4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z2T3_A0A2I2Z2T3_GORGO_9595 and tr_H2NXC8_H2NXC8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Z2T3_A0A2I2Z2T3_GORGO_9595 and tr_F7A4L9_F7A4L9_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2Z2T3_A0A2I2Z2T3_GORGO_9595 and tr_A0A2Y9TGT6_A0A2Y9TGT6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2NT13_H2NT13_PONAB_9601 and sp_P46734_MP2K3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NT13_H2NT13_PONAB_9601 and tr_A0A0D9R5N3_A0A0D9R5N3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NT13_H2NT13_PONAB_9601 and tr_A0A2K6C303_A0A2K6C303_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NT13_H2NT13_PONAB_9601 and tr_A0A2K5YAG6_A0A2K5YAG6_MANLE_9568 are exactly identical! WARNING: Sequences tr_B8PBQ2_B8PBQ2_POSPM_561896 and tr_A0A1X6NCZ1_A0A1X6NCZ1_9APHY_670580 are exactly identical! WARNING: Sequences tr_A0A2I3SB47_A0A2I3SB47_PANTR_9598 and sp_O14733_MP2K7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F6SMU6_F6SMU6_HORSE_9796 and tr_H0XFS0_H0XFS0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3ZMS8_M3ZMS8_XIPMA_8083 and tr_A0A087XR80_A0A087XR80_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AFM6_A0A088AFM6_APIME_7460 and tr_A0A1W5HRV8_A0A1W5HRV8_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AK16_A0A088AK16_APIME_7460 and tr_A0A2A3EFR1_A0A2A3EFR1_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P2U6_A0A158P2U6_ATTCE_12957 and tr_A0A195BP81_A0A195BP81_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0H5SCQ5_A0A0H5SCQ5_BRUMA_6279 and tr_A0A0N4SYA5_A0A0N4SYA5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0J9Y974_A0A0J9Y974_BRUMA_6279 and tr_A0A0R3QK90_A0A0R3QK90_9BILA_42155 are exactly identical! WARNING: Sequences tr_E5S8L7_E5S8L7_TRISP_6334 and tr_A0A0V0VW55_A0A0V0VW55_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S8L7_E5S8L7_TRISP_6334 and tr_A0A0V1LJL5_A0A0V1LJL5_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S8L7_E5S8L7_TRISP_6334 and tr_A0A0V0UIK9_A0A0V0UIK9_9BILA_144512 are exactly identical! WARNING: Sequences tr_G2YEH0_G2YEH0_BOTF4_999810 and tr_M7UU26_M7UU26_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_A0A2R8MD99_A0A2R8MD99_CALJA_9483 and tr_M3WG54_M3WG54_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2R8MD99_A0A2R8MD99_CALJA_9483 and tr_A0A2U3ZX97_A0A2U3ZX97_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2R8MD99_A0A2R8MD99_CALJA_9483 and tr_A0A2Y9LA93_A0A2Y9LA93_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1RV28_F1RV28_PIG_9823 and tr_A0A2Y9T6X4_A0A2Y9T6X4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E3LCC6_E3LCC6_CAERE_31234 and tr_A0A261CNT8_A0A261CNT8_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A5PJP8_A5PJP8_BOVIN_9913 and tr_A0A2U4C2R1_A0A2U4C2R1_TURTR_9739 are exactly identical! WARNING: Sequences tr_A5PJP8_A5PJP8_BOVIN_9913 and tr_A0A2Y9PYR4_A0A2Y9PYR4_DELLE_9749 are exactly identical! WARNING: Sequences tr_U3KH91_U3KH91_FICAL_59894 and tr_A0A218UVV1_A0A218UVV1_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091EAH1_A0A091EAH1_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091JSD5_A0A091JSD5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091VII9_A0A091VII9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A087R4C5_A0A087R4C5_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A093HEM6_A0A093HEM6_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091WT72_A0A091WT72_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A099ZWJ2_A0A099ZWJ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A093GI41_A0A093GI41_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A015L4Y7_A0A015L4Y7_9GLOM_1432141 and tr_A0A2I1F2S9_A0A2I1F2S9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044T5H2_A0A044T5H2_ONCVO_6282 and tr_A0A182EB03_A0A182EB03_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TMH6_A0A044TMH6_ONCVO_6282 and tr_A0A182DYP9_A0A182DYP9_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A2K6W6P0_A0A2K6W6P0_ONCVO_6282 and tr_A0A182EH55_A0A182EH55_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0D9R752_A0A0D9R752_CHLSB_60711 and tr_A0A2K5KQ51_A0A2K5KQ51_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0F8U465_A0A0F8U465_9EURO_308745 and tr_A0A2T5M2V9_A0A2T5M2V9_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A151M8T8_A0A151M8T8_ALLMI_8496 and tr_A0A1U7S241_A0A1U7S241_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151M8Y0_A0A151M8Y0_ALLMI_8496 and tr_A0A1U7RAB7_A0A1U7RAB7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A091KGX1_A0A091KGX1_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A093PVS0_A0A093PVS0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A091WBA4_A0A091WBA4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A087R3T0_A0A087R3T0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A093HN28_A0A093HN28_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A091XK07_A0A091XK07_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A099ZA44_A0A099ZA44_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A0A0A375_A0A0A0A375_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EX80_A0A091EX80_CORBR_85066 and tr_A0A093J0G4_A0A093J0G4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JN21_A0A091JN21_EGRGA_188379 and tr_A0A087RA59_A0A087RA59_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VBV3_A0A091VBV3_NIPNI_128390 and tr_A0A0A0ARR2_A0A0A0ARR2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091VJ65_A0A091VJ65_NIPNI_128390 and tr_A0A093HEM4_A0A093HEM4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A0V1DC79_A0A0V1DC79_TRIBR_45882 and tr_A0A0V0W8C5_A0A0V0W8C5_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DC79_A0A0V1DC79_TRIBR_45882 and tr_A0A0V1PF13_A0A0V1PF13_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0WFJ6_A0A0V0WFJ6_9BILA_92179 and tr_A0A0V1LV47_A0A0V1LV47_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A151XHS8_A0A151XHS8_9HYME_64791 and tr_A0A195DFM2_A0A195DFM2_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151XHS8_A0A151XHS8_9HYME_64791 and tr_A0A195C4A3_A0A195C4A3_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3L681_A0A1S3L681_SALSA_8030 and tr_A0A1S3PUE0_A0A1S3PUE0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3L681_A0A1S3L681_SALSA_8030 and tr_A0A060YCN5_A0A060YCN5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3Q521_A0A1S3Q521_SALSA_8030 and tr_A0A060XPV0_A0A060XPV0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1I7TB18_A0A1I7TB18_9PELO_1561998 and tr_A0A1I7TB19_A0A1I7TB19_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A226NJF7_A0A226NJF7_CALSU_9009 and tr_A0A226PTR2_A0A226PTR2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2N5T5U1_A0A2N5T5U1_9BASI_200324 and tr_A0A2N5VPQ4_A0A2N5VPQ4_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2U3WBJ3_A0A2U3WBJ3_ODORO_9708 and tr_A0A2U3XLA8_A0A2U3XLA8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WSJ5_A0A2U3WSJ5_ODORO_9708 and tr_A0A2U3XQZ9_A0A2U3XQZ9_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 111 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.reduced.phy Alignment comprises 1 partitions and 347 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 347 Gaps: 9.90 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/3_mltree/P46734.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 87 / 6960 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -120654.876773 [00:00:00 -120654.876773] Initial branch length optimization [00:00:00 -118680.720871] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -118335.046686 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.233282,0.200491) (0.221869,0.313177) (0.281790,0.834959) (0.263059,2.465082) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P46734/4_raxmlng_ancestral/P46734.raxml.log Analysis started: 04-Jun-2021 14:18:35 / finished: 04-Jun-2021 14:19:15 Elapsed time: 40.106 seconds