RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 14-Jul-2021 19:12:06 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/2_msa/P43405_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/3_mltree/P43405.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626279126 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/2_msa/P43405_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 635 sites WARNING: Sequences tr_B4QCQ4_B4QCQ4_DROSI_7240 and sp_Q9V9J3_SRC42_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QCQ4_B4QCQ4_DROSI_7240 and tr_B4II23_B4II23_DROSE_7238 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_U3IYV8_U3IYV8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2U3VSL4_A0A2U3VSL4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y1H1_M3Y1H1_MUSPF_9669 and tr_A0A2Y9JSJ0_A0A2Y9JSJ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and tr_A0A2I2Z667_A0A2I2Z667_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and sp_Q15303_ERBB4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and tr_F7G3H1_F7G3H1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and tr_F7HB76_F7HB76_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and tr_A0A2K5NV86_A0A2K5NV86_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R6F8_G1R6F8_NOMLE_61853 and tr_A0A2K6DNJ0_A0A2K6DNJ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_G3QJK0_G3QJK0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_A0A2I3TWE6_A0A2I3TWE6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and sp_P42684_ABL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_F7AU70_F7AU70_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_A0A2I3MIM0_A0A2I3MIM0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_A0A1U7TZR0_A0A1U7TZR0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1S0A6_G1S0A6_NOMLE_61853 and tr_A0A2K6CR83_A0A2K6CR83_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1P8R6_G1P8R6_MYOLU_59463 and tr_W5Q539_W5Q539_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1PC86_G1PC86_MYOLU_59463 and tr_H0WWK4_H0WWK4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_F1PEX6_F1PEX6_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3RAJ1_A0A2I3RAJ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3S7G9_A0A2I3S7G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H0V6K4_H0V6K4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H9YUX8_H9YUX8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G3SZ92_G3SZ92_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_D2H177_D2H177_AILME_9646 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G7PRB8_G7PRB8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_M3W3H7_M3W3H7_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5LX70_A0A2K5LX70_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K6B7I9_A0A2K6B7I9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5XNT4_A0A2K5XNT4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2R9BA11_A0A2R9BA11_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2U3VD43_A0A2U3VD43_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9DJL9_A0A2Y9DJL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9NX24_A0A2Y9NX24_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3S1C3_G3S1C3_GORGO_9595 and tr_A0A2I3N5G5_A0A2I3N5G5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3S1C3_G3S1C3_GORGO_9595 and tr_A0A2K5YHF7_A0A2K5YHF7_MANLE_9568 are exactly identical! WARNING: Sequences tr_H2N4J6_H2N4J6_PONAB_9601 and tr_F1MWH8_F1MWH8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_H1A456_H1A456_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A091EWN1_A0A091EWN1_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A091IJE8_A0A091IJE8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A091UYW5_A0A091UYW5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A093HBT4_A0A093HBT4_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A091FZH2_A0A091FZH2_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1MUH1_G1MUH1_MELGA_9103 and tr_A0A091I2G2_A0A091I2G2_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I3RF60_A0A2I3RF60_PANTR_9598 and tr_A0A2R9C6L4_A0A2R9C6L4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3T3L8_A0A2I3T3L8_PANTR_9598 and tr_A0A2R9CGB2_A0A2R9CGB2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8KTF6_A0A2J8KTF6_PANTR_9598 and tr_A0A2R9BI29_A0A2R9BI29_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QIE3_H2QIE3_PANTR_9598 and sp_P43403_ZAP70_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QTL3_H2QTL3_PANTR_9598 and sp_P42685_FRK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QTL3_H2QTL3_PANTR_9598 and tr_A0A2R9BRU0_A0A2R9BRU0_PANPA_9597 are exactly identical! WARNING: Sequences tr_E9PT20_E9PT20_RAT_10116 and tr_A0A1U7R1K5_A0A1U7R1K5_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A087ZQN7_A0A087ZQN7_APIME_7460 and tr_A0A0L7QY19_A0A0L7QY19_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZQN7_A0A087ZQN7_APIME_7460 and tr_A0A2A3E5Z4_A0A2A3E5Z4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088AT87_A0A088AT87_APIME_7460 and tr_A0A2A3EUP4_A0A2A3EUP4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_F4WY89_F4WY89_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A195AWS6_A0A195AWS6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A195CB93_A0A195CB93_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_F4WV60_F4WV60_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195DS06_A0A195DS06_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195BS54_A0A195BS54_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NUM9_A0A158NUM9_ATTCE_12957 and tr_A0A195EXC2_A0A195EXC2_9HYME_34720 are exactly identical! WARNING: Sequences sp_P00519_ABL1_HUMAN_9606 and tr_A0A0D9RQJ3_A0A0D9RQJ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5RE09_A0A1D5RE09_MACMU_9544 and tr_G7P1R4_G7P1R4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7FAI7_F7FAI7_MACMU_9544 and tr_A0A0D9RXH6_A0A0D9RXH6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FAI7_F7FAI7_MACMU_9544 and tr_A0A2K5MYN1_A0A2K5MYN1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FAI7_F7FAI7_MACMU_9544 and tr_A0A2K6CVN0_A0A2K6CVN0_MACNE_9545 are exactly identical! WARNING: Sequences sp_P55245_EGFR_MACMU_9544 and tr_A0A0D9RU37_A0A0D9RU37_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P55245_EGFR_MACMU_9544 and tr_A0A2K6B1P2_A0A2K6B1P2_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZMM7_H0ZMM7_TAEGU_59729 and tr_A0A087R5J3_A0A087R5J3_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZMM7_H0ZMM7_TAEGU_59729 and tr_A0A091GP40_A0A091GP40_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZMM7_H0ZMM7_TAEGU_59729 and tr_A0A091HM34_A0A091HM34_CALAN_9244 are exactly identical! WARNING: Sequences tr_G7PSP1_G7PSP1_MACFA_9541 and tr_A0A096P223_A0A096P223_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A096MVJ9_A0A096MVJ9_PAPAN_9555 and tr_A0A2K5N7J8_A0A2K5N7J8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0K0FZX4_A0A0K0FZX4_STRVS_75913 and tr_A0A0N5BRC9_A0A0N5BRC9_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MFN4_A0A151MFN4_ALLMI_8496 and tr_A0A1U7S4W8_A0A1U7S4W8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091FAS5_A0A091FAS5_CORBR_85066 and tr_A0A091V7N8_A0A091V7N8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IVD5_A0A091IVD5_EGRGA_188379 and tr_A0A091VW16_A0A091VW16_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IVD5_A0A091IVD5_EGRGA_188379 and tr_A0A091W908_A0A091W908_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IVD5_A0A091IVD5_EGRGA_188379 and tr_A0A091GCH0_A0A091GCH0_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A093PK85_A0A093PK85_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A091URD2_A0A091URD2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A087RGY7_A0A087RGY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JHY2_A0A091JHY2_EGRGA_188379 and tr_A0A091UWV7_A0A091UWV7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHY2_A0A091JHY2_EGRGA_188379 and tr_A0A087RD36_A0A087RD36_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JHY2_A0A091JHY2_EGRGA_188379 and tr_A0A093H843_A0A093H843_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JHY2_A0A091JHY2_EGRGA_188379 and tr_A0A091G8V1_A0A091G8V1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JHY2_A0A091JHY2_EGRGA_188379 and tr_A0A091IG63_A0A091IG63_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A151WIK7_A0A151WIK7_9HYME_64791 and tr_A0A151IX42_A0A151IX42_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151X6R4_A0A151X6R4_9HYME_64791 and tr_A0A195EHE4_A0A195EHE4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A151X6R4_A0A151X6R4_9HYME_64791 and tr_A0A195FER6_A0A195FER6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1L8GGA5_A0A1L8GGA5_XENLA_8355 and tr_A0A1L8GML3_A0A1L8GML3_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2D0PSX8_A0A2D0PSX8_ICTPU_7998 and tr_A0A2D0PUH5_A0A2D0PUH5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PSX8_A0A2D0PSX8_ICTPU_7998 and tr_A0A2D0PW58_A0A2D0PW58_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PSX8_A0A2D0PSX8_ICTPU_7998 and tr_A0A2D0PX14_A0A2D0PX14_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PW63_A0A2D0PW63_ICTPU_7998 and tr_A0A2D0PX19_A0A2D0PX19_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R4V7_A0A2D0R4V7_ICTPU_7998 and tr_A0A2D0R5J2_A0A2D0R5J2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RBL1_A0A2D0RBL1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RBP7_A0A2D0RBP7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RBT5_A0A2D0RBT5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RBU8_A0A2D0RBU8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RCU1_A0A2D0RCU1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBJ8_A0A2D0RBJ8_ICTPU_7998 and tr_A0A2D0RCV2_A0A2D0RCV2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBR4_A0A2D0RBR4_ICTPU_7998 and tr_A0A2D0RBS3_A0A2D0RBS3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBR4_A0A2D0RBR4_ICTPU_7998 and tr_A0A2D0RCT4_A0A2D0RCT4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4B2R3_A0A2U4B2R3_TURTR_9739 and tr_A0A2Y9T6F6_A0A2Y9T6F6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BML0_A0A2U4BML0_TURTR_9739 and tr_A0A2Y9SV06_A0A2Y9SV06_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3XRU8_A0A2U3XRU8_LEPWE_9713 and tr_A0A384CJV3_A0A384CJV3_URSMA_29073 are exactly identical! WARNING: Duplicate sequences found: 109 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.reduced.phy Alignment comprises 1 partitions and 635 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 635 Gaps: 25.85 % Invariant sites: 1.26 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/3_mltree/P43405.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 159 / 12720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -180466.735909 [00:00:00 -180466.735909] Initial branch length optimization [00:00:01 -173772.500935] Model parameter optimization (eps = 0.100000) [00:00:38] Tree #1, final logLikelihood: -173434.415214 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.114469,0.223624) (0.144942,0.269862) (0.355403,0.772166) (0.385186,1.715685) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P43405/4_raxmlng_ancestral/P43405.raxml.log Analysis started: 14-Jul-2021 19:12:06 / finished: 14-Jul-2021 19:12:50 Elapsed time: 43.899 seconds