RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:36:01 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/2_msa/P43320_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100561 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/2_msa/P43320_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 205 sites WARNING: Sequences sp_P07530_CRBB1_CHICK_9031 and tr_A0A226MVH9_A0A226MVH9_CALSU_9009 are exactly identical! WARNING: Sequences sp_P07530_CRBB1_CHICK_9031 and tr_A0A226PY44_A0A226PY44_COLVI_9014 are exactly identical! WARNING: Sequences sp_P10042_CRBA1_CHICK_9031 and tr_H9H1R5_H9H1R5_MELGA_9103 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and sp_P62697_CRBB2_RAT_10116 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and tr_A0A1U7Q218_A0A1U7Q218_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and sp_P62698_CRBB2_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YC57_M3YC57_MUSPF_9669 and tr_A0A2Y9K901_A0A2Y9K901_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2U3VW86_A0A2U3VW86_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2U3YBI1_A0A2U3YBI1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2Y9JV88_A0A2Y9JV88_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and sp_P43320_CRBB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_F7IAH0_F7IAH0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A096NW62_A0A096NW62_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A0D9RCT3_A0A0D9RCT3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A2K5NA26_A0A2K5NA26_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R0K8_G3R0K8_GORGO_9595 and tr_H2QJB2_H2QJB2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RCE9_G3RCE9_GORGO_9595 and sp_P22914_CRYGS_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RUZ8_G3RUZ8_GORGO_9595 and tr_H2QJB1_H2QJB1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SGF7_G3SGF7_GORGO_9595 and tr_H2R0F6_H2R0F6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SGF7_G3SGF7_GORGO_9595 and tr_A0A2R9A076_A0A2R9A076_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3URF3_G3URF3_MELGA_9103 and tr_A0A226MUZ3_A0A226MUZ3_CALSU_9009 are exactly identical! WARNING: Sequences tr_G3URF3_G3URF3_MELGA_9103 and tr_A0A226PY14_A0A226PY14_COLVI_9014 are exactly identical! WARNING: Sequences sp_A2IBY7_CRYGS_CANLF_9615 and tr_A0A2U3WVG0_A0A2U3WVG0_ODORO_9708 are exactly identical! WARNING: Sequences sp_A2IBY7_CRYGS_CANLF_9615 and tr_A0A2U3YHV0_A0A2U3YHV0_LEPWE_9713 are exactly identical! WARNING: Sequences sp_A2ICR5_CRBA4_CANLF_9615 and tr_G1K2A5_G1K2A5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q2LEC2_CRBB2_CANLF_9615 and tr_M3WJG9_M3WJG9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q2LEC2_CRBB2_CANLF_9615 and tr_A0A2Y9KXS2_A0A2Y9KXS2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2J8QN05_A0A2J8QN05_PANTR_9598 and tr_A0A2R9B6F6_A0A2R9B6F6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A7KK31_A7KK31_PANTR_9598 and sp_P11844_CRGA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A7KK31_A7KK31_PANTR_9598 and tr_A7KK28_A7KK28_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QCK1_H2QCK1_PANTR_9598 and tr_A0A2R8ZFR9_A0A2R8ZFR9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QJF9_H2QJF9_PANTR_9598 and tr_A0A2R8ZH79_A0A2R8ZH79_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QLE9_H2QLE9_PANTR_9598 and tr_A0A2R9A3H6_A0A2R9A3H6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2RCF8_H2RCF8_PANTR_9598 and tr_A0A2R9CI67_A0A2R9CI67_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q52NW3_Q52NW3_SHEEP_9940 and sp_P19141_CRBB3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NUB1_W5NUB1_SHEEP_9940 and sp_P11842_CRBA4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NUB1_W5NUB1_SHEEP_9940 and tr_Q6DTZ8_Q6DTZ8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QCG5_W5QCG5_SHEEP_9940 and sp_P02522_CRBB2_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P14881_CRBA1_RAT_10116 and tr_A0A1U7QE17_A0A1U7QE17_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3ZHW7_M3ZHW7_XIPMA_8083 and tr_A0A087XFJ6_A0A087XFJ6_POEFO_48698 are exactly identical! WARNING: Sequences sp_A3RLD8_CRGC_MACMU_9544 and tr_G7PLA8_G7PLA8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2I3N8B8_A0A2I3N8B8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2K5NYX4_A0A2K5NYX4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2K6A4K3_A0A2K6A4K3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6T4W0_F6T4W0_MACMU_9544 and tr_G7PTY8_G7PTY8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_G7NYM3_G7NYM3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A096NCK3_A0A096NCK3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A0D9RNN2_A0A0D9RNN2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K5P3E0_A0A2K5P3E0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K6C2J9_A0A2K6C2J9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K5XZH8_A0A2K5XZH8_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7F0F8_F7F0F8_MACMU_9544 and tr_G7PHG1_G7PHG1_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F0F8_F7F0F8_MACMU_9544 and tr_A0A2K6CA33_A0A2K6CA33_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_G7PHG2_G7PHG2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A096NRG8_A0A096NRG8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A2K6CN04_A0A2K6CN04_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A2K5YFB3_A0A2K5YFB3_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZBN7_H0ZBN7_TAEGU_59729 and tr_A0A091ET72_A0A091ET72_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZBN7_H0ZBN7_TAEGU_59729 and tr_A0A218V5C5_A0A218V5C5_9PASE_299123 are exactly identical! WARNING: Sequences tr_G1LCF5_G1LCF5_AILME_9646 and tr_A0A384CGK3_A0A384CGK3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1MHW3_G1MHW3_AILME_9646 and tr_A0A384BRX1_A0A384BRX1_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PK32_G7PK32_MACFA_9541 and tr_A0A2K6CIL7_A0A2K6CIL7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PLA9_G7PLA9_MACFA_9541 and tr_A0A0D9RCE9_A0A0D9RCE9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_U3JNI8_U3JNI8_FICAL_59894 and tr_A0A218VB48_A0A218VB48_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3K1U9_U3K1U9_FICAL_59894 and tr_A0A218V5I9_A0A218V5I9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096MR79_A0A096MR79_PAPAN_9555 and tr_A0A2K5XHM4_A0A2K5XHM4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096NRG7_A0A096NRG7_PAPAN_9555 and tr_A0A2K5P4D4_A0A2K5P4D4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NRG7_A0A096NRG7_PAPAN_9555 and tr_A0A2K6A832_A0A2K6A832_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096P3I1_A0A096P3I1_PAPAN_9555 and tr_A0A2K5LX60_A0A2K5LX60_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P3I1_A0A096P3I1_PAPAN_9555 and tr_A0A2K6DFB0_A0A2K6DFB0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K5MJV9_A0A2K5MJV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K6B305_A0A2K6B305_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K6AKB7_A0A2K6AKB7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151MUJ3_A0A151MUJ3_ALLMI_8496 and tr_A0A1U8CYG7_A0A1U8CYG7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NSD4_A0A151NSD4_ALLMI_8496 and tr_A0A1U7RC16_A0A1U7RC16_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091KBR5_A0A091KBR5_EGRGA_188379 and tr_A0A0A0AWW9_A0A0A0AWW9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M8E2_A0A2I0M8E2_COLLI_8932 and tr_A0A1V4JRU4_A0A1V4JRU4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M8Q6_A0A2I0M8Q6_COLLI_8932 and tr_A0A1V4JRS7_A0A1V4JRS7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3LT64_A0A1S3LT64_SALSA_8030 and tr_A0A060YL58_A0A060YL58_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NWE2_A0A1S3NWE2_SALSA_8030 and tr_A0A060VZU1_A0A060VZU1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PLI5_A0A1S3PLI5_SALSA_8030 and tr_A0A060VRA2_A0A060VRA2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PN29_A0A1S3PN29_SALSA_8030 and tr_A0A060WPA1_A0A060WPA1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NNY9_A0A226NNY9_CALSU_9009 and tr_A0A226PBM3_A0A226PBM3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SW70_A0A2D0SW70_ICTPU_7998 and tr_A0A2D0SW87_A0A2D0SW87_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5N1A1_A0A2K5N1A1_CERAT_9531 and tr_A0A2K5XZP1_A0A2K5XZP1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AP21_A0A2U4AP21_TURTR_9739 and tr_A0A2Y9Q089_A0A2Y9Q089_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3W434_A0A2U3W434_ODORO_9708 and tr_A0A2U3YH81_A0A2U3YH81_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9EGP7_A0A2Y9EGP7_PHYCD_9755 and tr_A0A384A1G2_A0A384A1G2_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 88 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.reduced.phy Alignment comprises 1 partitions and 205 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 205 Gaps: 10.87 % Invariant sites: 0.98 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 52 / 4160 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -60398.135831 [00:00:00 -60398.135831] Initial branch length optimization [00:00:00 -58258.908173] Model parameter optimization (eps = 0.100000) [00:00:35] Tree #1, final logLikelihood: -58025.148721 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.167274,0.331933) (0.229644,0.594602) (0.376401,0.993734) (0.226681,1.914085) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/4_raxmlng_ancestral/P43320.raxml.log Analysis started: 12-Jul-2021 17:36:01 / finished: 12-Jul-2021 17:36:39 Elapsed time: 37.848 seconds Consumed energy: 3.587 Wh