RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jul-2021 01:02:21 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/2_msa/P43320_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/2_msa/P43320_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 159 sites WARNING: Sequences tr_A0A1D5PD42_A0A1D5PD42_CHICK_9031 and sp_Q05714_CRBB2_CHICK_9031 are exactly identical! WARNING: Sequences tr_A0A1D5PD42_A0A1D5PD42_CHICK_9031 and tr_G3URF3_G3URF3_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PD42_A0A1D5PD42_CHICK_9031 and tr_A0A226MUZ3_A0A226MUZ3_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PD42_A0A1D5PD42_CHICK_9031 and tr_A0A226PY14_A0A226PY14_COLVI_9014 are exactly identical! WARNING: Sequences sp_P07530_CRBB1_CHICK_9031 and tr_A0A226MVH9_A0A226MVH9_CALSU_9009 are exactly identical! WARNING: Sequences sp_P07530_CRBB1_CHICK_9031 and tr_A0A226PY44_A0A226PY44_COLVI_9014 are exactly identical! WARNING: Sequences sp_P10042_CRBA1_CHICK_9031 and tr_H9H1R5_H9H1R5_MELGA_9103 are exactly identical! WARNING: Sequences sp_P10042_CRBA1_CHICK_9031 and tr_A0A226MWE2_A0A226MWE2_CALSU_9009 are exactly identical! WARNING: Sequences sp_P10042_CRBA1_CHICK_9031 and tr_A0A226NZZ6_A0A226NZZ6_COLVI_9014 are exactly identical! WARNING: Sequences sp_P49152_CRBA4_CHICK_9031 and tr_A0A226MV34_A0A226MV34_CALSU_9009 are exactly identical! WARNING: Sequences sp_P49152_CRBA4_CHICK_9031 and tr_A0A226PZE5_A0A226PZE5_COLVI_9014 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and sp_P62697_CRBB2_RAT_10116 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and tr_A0A1U7Q218_A0A1U7Q218_MESAU_10036 are exactly identical! WARNING: Sequences sp_P62696_CRBB2_MOUSE_10090 and sp_P62698_CRBB2_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XVR4_M3XVR4_MUSPF_9669 and sp_A2IBY7_CRYGS_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XVR4_M3XVR4_MUSPF_9669 and tr_A0A2U3WVG0_A0A2U3WVG0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XVR4_M3XVR4_MUSPF_9669 and tr_A0A2U3YHV0_A0A2U3YHV0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YC57_M3YC57_MUSPF_9669 and tr_A0A2Y9K901_A0A2Y9K901_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQ86_M3YQ86_MUSPF_9669 and tr_A0A2Y9KWZ3_A0A2Y9KWZ3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQF1_M3YQF1_MUSPF_9669 and sp_Q2LEC2_CRBB2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YQF1_M3YQF1_MUSPF_9669 and tr_M3WJG9_M3WJG9_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YQF1_M3YQF1_MUSPF_9669 and tr_A0A2Y9KXS2_A0A2Y9KXS2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQH0_M3YQH0_MUSPF_9669 and tr_A0A337S730_A0A337S730_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2U3VW86_A0A2U3VW86_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2U3YBI1_A0A2U3YBI1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YRF4_M3YRF4_MUSPF_9669 and tr_A0A2Y9JV88_A0A2Y9JV88_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YYP0_M3YYP0_MUSPF_9669 and tr_E2RGF4_E2RGF4_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_H2P3W0_H2P3W0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and sp_A2IBH5_CRBB2_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A4L9L6_A4L9L6_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and sp_P43320_CRBB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_F7IAH0_F7IAH0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_L5L5R6_L5L5R6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A096NW62_A0A096NW62_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A0D9RCT3_A0A0D9RCT3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R850_G1R850_NOMLE_61853 and tr_A0A2K5NA26_A0A2K5NA26_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3HTC3_G3HTC3_CRIGR_10029 and tr_A0A1U8CHR0_A0A1U8CHR0_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3R0K8_G3R0K8_GORGO_9595 and tr_H2QJB2_H2QJB2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RCE9_G3RCE9_GORGO_9595 and sp_P22914_CRYGS_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RCS4_G3RCS4_GORGO_9595 and sp_P53674_CRBB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RUZ8_G3RUZ8_GORGO_9595 and tr_H2QJB1_H2QJB1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RUZ8_G3RUZ8_GORGO_9595 and tr_A0A2R9A6L2_A0A2R9A6L2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SCP7_G3SCP7_GORGO_9595 and tr_A0A2J8QN05_A0A2J8QN05_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SCP7_G3SCP7_GORGO_9595 and tr_A0A2R9B6F6_A0A2R9B6F6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SGF7_G3SGF7_GORGO_9595 and tr_H2R0F6_H2R0F6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SGF7_G3SGF7_GORGO_9595 and tr_A0A2R9A076_A0A2R9A076_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1T2Y7_G1T2Y7_RABIT_9986 and tr_A2IBY9_A2IBY9_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1T2Y7_G1T2Y7_RABIT_9986 and sp_P14881_CRBA1_RAT_10116 are exactly identical! WARNING: Sequences tr_G1T2Y7_G1T2Y7_RABIT_9986 and tr_A0A1U7QE17_A0A1U7QE17_MESAU_10036 are exactly identical! WARNING: Sequences sp_A2ICR5_CRBA4_CANLF_9615 and tr_G1K2A5_G1K2A5_CANLF_9615 are exactly identical! WARNING: Sequences tr_A7KK31_A7KK31_PANTR_9598 and sp_P11844_CRGA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A7KK31_A7KK31_PANTR_9598 and tr_A7KK28_A7KK28_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QCK1_H2QCK1_PANTR_9598 and tr_A0A2R8ZFR9_A0A2R8ZFR9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QJF9_H2QJF9_PANTR_9598 and tr_A0A2R8ZH79_A0A2R8ZH79_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QLE9_H2QLE9_PANTR_9598 and tr_A0A2R9A3H6_A0A2R9A3H6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2RCF8_H2RCF8_PANTR_9598 and tr_A0A2R9CI67_A0A2R9CI67_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7F7L0_F7F7L0_MONDO_13616 and tr_G3VWI7_G3VWI7_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q52NW3_Q52NW3_SHEEP_9940 and sp_P19141_CRBB3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NUB1_W5NUB1_SHEEP_9940 and sp_P11842_CRBA4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NUB1_W5NUB1_SHEEP_9940 and tr_Q6DTZ8_Q6DTZ8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QCG5_W5QCG5_SHEEP_9940 and sp_P02522_CRBB2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3ZHW7_M3ZHW7_XIPMA_8083 and tr_A0A087XFJ6_A0A087XFJ6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4ANR1_M4ANR1_XIPMA_8083 and tr_A0A096LRV9_A0A096LRV9_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2VEM2_H2VEM2_TAKRU_31033 and tr_Q4S1U6_Q4S1U6_TETNG_99883 are exactly identical! WARNING: Sequences sp_A3RLD8_CRGC_MACMU_9544 and tr_G7PLA8_G7PLA8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_G7PLA9_G7PLA9_MACFA_9541 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2I3N8B8_A0A2I3N8B8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A0D9RCE9_A0A0D9RCE9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2K5NYX4_A0A2K5NYX4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A7KK27_A7KK27_MACMU_9544 and tr_A0A2K6A4K3_A0A2K6A4K3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6T4W0_F6T4W0_MACMU_9544 and tr_G7PTY8_G7PTY8_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_G7NYM3_G7NYM3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A096NCK3_A0A096NCK3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A0D9RNN2_A0A0D9RNN2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K5P3E0_A0A2K5P3E0_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K6C2J9_A0A2K6C2J9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6WSD9_F6WSD9_MACMU_9544 and tr_A0A2K5XZH8_A0A2K5XZH8_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7F0F8_F7F0F8_MACMU_9544 and tr_G7PHG1_G7PHG1_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F0F8_F7F0F8_MACMU_9544 and tr_A0A0D9RCD2_A0A0D9RCD2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7F0F8_F7F0F8_MACMU_9544 and tr_A0A2K6CA33_A0A2K6CA33_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_G7PHG2_G7PHG2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A096NRG8_A0A096NRG8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A0D9RCA9_A0A0D9RCA9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A2K6CN04_A0A2K6CN04_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F0G3_F7F0G3_MACMU_9544 and tr_A0A2K5YFB3_A0A2K5YFB3_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZBN7_H0ZBN7_TAEGU_59729 and tr_U3K1A4_U3K1A4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZBN7_H0ZBN7_TAEGU_59729 and tr_A0A091ET72_A0A091ET72_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZBN7_H0ZBN7_TAEGU_59729 and tr_A0A218V5C5_A0A218V5C5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A287AR20_A0A287AR20_PIG_9823 and tr_A0A2U4CJR2_A0A2U4CJR2_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A287AR20_A0A287AR20_PIG_9823 and tr_A0A2Y9LAE6_A0A2Y9LAE6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A287AR20_A0A287AR20_PIG_9823 and tr_A0A384A0Y1_A0A384A0Y1_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1L2Q3_G1L2Q3_AILME_9646 and tr_A0A384D8Z6_A0A384D8Z6_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LCF5_G1LCF5_AILME_9646 and tr_A0A384CGK3_A0A384CGK3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1MHW3_G1MHW3_AILME_9646 and tr_A0A384BRX1_A0A384BRX1_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PK32_G7PK32_MACFA_9541 and tr_A0A2K6CIL7_A0A2K6CIL7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1N5Q6_F1N5Q6_BOVIN_9913 and sp_P11843_CRBA1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3JNI8_U3JNI8_FICAL_59894 and tr_A0A218VB48_A0A218VB48_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3K1U9_U3K1U9_FICAL_59894 and tr_A0A091UN01_A0A091UN01_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3K1U9_U3K1U9_FICAL_59894 and tr_A0A091G093_A0A091G093_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3K1U9_U3K1U9_FICAL_59894 and tr_A0A218V5I9_A0A218V5I9_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A087YK63_A0A087YK63_POEFO_48698 and tr_A0A096MA92_A0A096MA92_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A096MBX7_A0A096MBX7_POEFO_48698 and tr_A0A096MF25_A0A096MF25_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A096MR79_A0A096MR79_PAPAN_9555 and tr_A0A2K5MKP1_A0A2K5MKP1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MR79_A0A096MR79_PAPAN_9555 and tr_A0A2K5XHM4_A0A2K5XHM4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096NRG7_A0A096NRG7_PAPAN_9555 and tr_A0A2K5P4D4_A0A2K5P4D4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NRG7_A0A096NRG7_PAPAN_9555 and tr_A0A2K6A832_A0A2K6A832_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096P3I1_A0A096P3I1_PAPAN_9555 and tr_A0A2K5LX60_A0A2K5LX60_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P3I1_A0A096P3I1_PAPAN_9555 and tr_A0A2K6DFB0_A0A2K6DFB0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K5MJV9_A0A2K5MJV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K6B305_A0A2K6B305_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MRW5_A0A2I3MRW5_PAPAN_9555 and tr_A0A2K6AKB7_A0A2K6AKB7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151MUE8_A0A151MUE8_ALLMI_8496 and tr_A0A1U8CWQ7_A0A1U8CWQ7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MUJ3_A0A151MUJ3_ALLMI_8496 and tr_A0A1U8CYG7_A0A1U8CYG7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N992_A0A151N992_ALLMI_8496 and tr_A0A3Q0HEH4_A0A3Q0HEH4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NSD4_A0A151NSD4_ALLMI_8496 and tr_A0A1U7RC16_A0A1U7RC16_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EP53_A0A091EP53_CORBR_85066 and tr_A0A218V2P2_A0A218V2P2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091KBR5_A0A091KBR5_EGRGA_188379 and tr_A0A0A0AWW9_A0A0A0AWW9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091VD46_A0A091VD46_NIPNI_128390 and tr_A0A093H497_A0A093H497_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0M8E2_A0A2I0M8E2_COLLI_8932 and tr_A0A1V4JRU4_A0A1V4JRU4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0M8Q6_A0A2I0M8Q6_COLLI_8932 and tr_A0A1V4JRS7_A0A1V4JRS7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3LT64_A0A1S3LT64_SALSA_8030 and tr_A0A060YL58_A0A060YL58_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NMT5_A0A1S3NMT5_SALSA_8030 and tr_A0A060WV26_A0A060WV26_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NWE2_A0A1S3NWE2_SALSA_8030 and tr_A0A060VZU1_A0A060VZU1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PLI5_A0A1S3PLI5_SALSA_8030 and tr_A0A060VRA2_A0A060VRA2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PN29_A0A1S3PN29_SALSA_8030 and tr_A0A060WPA1_A0A060WPA1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3STA3_A0A1S3STA3_SALSA_8030 and tr_A0A060WCS4_A0A060WCS4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A060XAR1_A0A060XAR1_ONCMY_8022 and tr_A0A060XWC1_A0A060XWC1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NCJ9_A0A226NCJ9_CALSU_9009 and tr_A0A226PTQ1_A0A226PTQ1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NNY9_A0A226NNY9_CALSU_9009 and tr_A0A226PBM3_A0A226PBM3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SW70_A0A2D0SW70_ICTPU_7998 and tr_A0A2D0SW87_A0A2D0SW87_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5N1A1_A0A2K5N1A1_CERAT_9531 and tr_A0A2K5XZP1_A0A2K5XZP1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4AP21_A0A2U4AP21_TURTR_9739 and tr_A0A2Y9Q089_A0A2Y9Q089_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CKT0_A0A2U4CKT0_TURTR_9739 and tr_A0A2Y9LA59_A0A2Y9LA59_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3W434_A0A2U3W434_ODORO_9708 and tr_A0A2U3YH81_A0A2U3YH81_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WT14_A0A2U3WT14_ODORO_9708 and tr_A0A2U3Y375_A0A2U3Y375_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9EGP7_A0A2Y9EGP7_PHYCD_9755 and tr_A0A384A1G2_A0A384A1G2_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 136 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.reduced.phy Alignment comprises 1 partitions and 159 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 159 / 159 Gaps: 0.86 % Invariant sites: 1.26 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 159 / 12720 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -263850.854968] Initial branch length optimization [00:00:03 -222209.866820] Model parameter optimization (eps = 10.000000) [00:00:40 -221123.236100] AUTODETECT spr round 1 (radius: 5) [00:02:48 -131741.844643] AUTODETECT spr round 2 (radius: 10) [00:05:01 -90844.851626] AUTODETECT spr round 3 (radius: 15) [00:07:31 -74633.104680] AUTODETECT spr round 4 (radius: 20) [00:10:20 -67050.218515] AUTODETECT spr round 5 (radius: 25) [00:13:37 -62977.031017] SPR radius for FAST iterations: 25 (autodetect) [00:13:37 -62977.031017] Model parameter optimization (eps = 3.000000) [00:13:59 -62930.397250] FAST spr round 1 (radius: 25) [00:16:11 -46850.445231] FAST spr round 2 (radius: 25) [00:18:05 -44786.846778] FAST spr round 3 (radius: 25) [00:19:45 -44471.057146] FAST spr round 4 (radius: 25) [00:21:18 -44451.306960] FAST spr round 5 (radius: 25) [00:22:43 -44451.306741] Model parameter optimization (eps = 1.000000) [00:22:52 -44449.581152] SLOW spr round 1 (radius: 5) [00:24:46 -44442.213448] SLOW spr round 2 (radius: 5) [00:26:47 -44441.266757] SLOW spr round 3 (radius: 5) [00:28:45 -44440.826253] SLOW spr round 4 (radius: 5) [00:30:38 -44440.825908] SLOW spr round 5 (radius: 10) [00:32:22 -44440.825907] SLOW spr round 6 (radius: 15) [00:34:56 -44440.529324] SLOW spr round 7 (radius: 5) [00:37:13 -44440.528327] SLOW spr round 8 (radius: 10) [00:39:11 -44440.528285] SLOW spr round 9 (radius: 15) [00:41:48 -44440.528283] SLOW spr round 10 (radius: 20) [00:45:54 -44440.528282] SLOW spr round 11 (radius: 25) [00:51:30 -44440.528282] Model parameter optimization (eps = 0.100000) [00:51:39] [worker #0] ML tree search #1, logLikelihood: -44439.806647 [00:51:39 -265223.160494] Initial branch length optimization [00:51:43 -223391.742954] Model parameter optimization (eps = 10.000000) [00:52:23 -222401.858419] AUTODETECT spr round 1 (radius: 5) [00:53:31] [worker #1] ML tree search #2, logLikelihood: -44417.709141 [00:54:38 -129790.643670] AUTODETECT spr round 2 (radius: 10) [00:56:51 -84965.895497] AUTODETECT spr round 3 (radius: 15) [00:59:24 -67326.033770] AUTODETECT spr round 4 (radius: 20) [01:02:13 -59582.193326] AUTODETECT spr round 5 (radius: 25) [01:05:23 -54663.965029] SPR radius for FAST iterations: 25 (autodetect) [01:05:23 -54663.965029] Model parameter optimization (eps = 3.000000) [01:05:44 -54643.794438] FAST spr round 1 (radius: 25) [01:05:46] [worker #2] ML tree search #3, logLikelihood: -44472.983116 [01:07:47 -45155.353711] FAST spr round 2 (radius: 25) [01:09:34 -44569.998634] FAST spr round 3 (radius: 25) [01:11:13 -44518.847219] FAST spr round 4 (radius: 25) [01:12:43 -44515.840422] FAST spr round 5 (radius: 25) [01:14:12 -44515.840393] Model parameter optimization (eps = 1.000000) [01:14:22 -44512.594095] SLOW spr round 1 (radius: 5) [01:16:24 -44504.035670] SLOW spr round 2 (radius: 5) [01:18:21 -44503.322060] SLOW spr round 3 (radius: 5) [01:20:14 -44503.321993] SLOW spr round 4 (radius: 10) [01:22:02 -44502.110288] SLOW spr round 5 (radius: 5) [01:24:24 -44502.109764] SLOW spr round 6 (radius: 10) [01:26:26 -44502.109732] SLOW spr round 7 (radius: 15) [01:28:56 -44501.294138] SLOW spr round 8 (radius: 5) [01:31:18 -44501.294112] SLOW spr round 9 (radius: 10) [01:33:22 -44501.294111] SLOW spr round 10 (radius: 15) [01:35:54 -44501.294111] SLOW spr round 11 (radius: 20) [01:39:23 -44501.294111] SLOW spr round 12 (radius: 25) [01:43:25 -44501.294111] Model parameter optimization (eps = 0.100000) [01:43:29] [worker #0] ML tree search #4, logLikelihood: -44501.281256 [01:43:29 -263783.259747] Initial branch length optimization [01:43:35 -221703.571316] Model parameter optimization (eps = 10.000000) [01:44:32 -220604.346773] AUTODETECT spr round 1 (radius: 5) [01:46:44 -130635.413946] AUTODETECT spr round 2 (radius: 10) [01:48:56 -87496.036256] AUTODETECT spr round 3 (radius: 15) [01:51:14] [worker #2] ML tree search #6, logLikelihood: -44432.805700 [01:51:40 -69479.844838] AUTODETECT spr round 4 (radius: 20) [01:54:07] [worker #1] ML tree search #5, logLikelihood: -44434.118191 [01:54:40 -61360.089301] AUTODETECT spr round 5 (radius: 25) [01:58:12 -56621.116446] SPR radius for FAST iterations: 25 (autodetect) [01:58:12 -56621.116446] Model parameter optimization (eps = 3.000000) [01:58:30 -56607.599652] FAST spr round 1 (radius: 25) [02:00:48 -45327.429467] FAST spr round 2 (radius: 25) [02:02:35 -44517.531518] FAST spr round 3 (radius: 25) [02:04:13 -44454.808725] FAST spr round 4 (radius: 25) [02:05:46 -44453.084842] FAST spr round 5 (radius: 25) [02:07:17 -44451.878896] FAST spr round 6 (radius: 25) [02:08:47 -44451.878890] Model parameter optimization (eps = 1.000000) [02:08:59 -44445.837170] SLOW spr round 1 (radius: 5) [02:11:04 -44429.776258] SLOW spr round 2 (radius: 5) [02:12:58 -44428.282969] SLOW spr round 3 (radius: 5) [02:14:48 -44428.282902] SLOW spr round 4 (radius: 10) [02:16:37 -44424.868080] SLOW spr round 5 (radius: 5) [02:18:53 -44424.264067] SLOW spr round 6 (radius: 5) [02:20:52 -44424.057592] SLOW spr round 7 (radius: 5) [02:22:44 -44424.057579] SLOW spr round 8 (radius: 10) [02:24:30 -44424.057574] SLOW spr round 9 (radius: 15) [02:27:08 -44424.057574] SLOW spr round 10 (radius: 20) [02:31:00 -44424.057574] SLOW spr round 11 (radius: 25) [02:36:27 -44424.057574] Model parameter optimization (eps = 0.100000) [02:36:36] [worker #0] ML tree search #7, logLikelihood: -44424.035960 [02:36:36 -265374.766139] Initial branch length optimization [02:36:42 -223509.627949] Model parameter optimization (eps = 10.000000) [02:37:17 -222514.119923] AUTODETECT spr round 1 (radius: 5) [02:39:28 -125822.181788] AUTODETECT spr round 2 (radius: 10) [02:41:38 -87216.398479] AUTODETECT spr round 3 (radius: 15) [02:42:50] [worker #1] ML tree search #8, logLikelihood: -44433.097136 [02:44:07 -73035.400506] AUTODETECT spr round 4 (radius: 20) [02:47:19 -61035.308082] AUTODETECT spr round 5 (radius: 25) [02:50:17 -56283.782848] SPR radius for FAST iterations: 25 (autodetect) [02:50:17 -56283.782848] Model parameter optimization (eps = 3.000000) [02:50:38 -56249.690616] FAST spr round 1 (radius: 25) [02:52:40 -45439.690480] FAST spr round 2 (radius: 25) [02:54:22 -44566.207189] FAST spr round 3 (radius: 25) [02:55:57 -44511.422276] FAST spr round 4 (radius: 25) [02:57:31 -44497.619539] FAST spr round 5 (radius: 25) [02:58:59 -44495.897158] FAST spr round 6 (radius: 25) [03:00:35 -44495.897095] Model parameter optimization (eps = 1.000000) [03:00:47 -44489.876799] SLOW spr round 1 (radius: 5) [03:02:49 -44478.700174] SLOW spr round 2 (radius: 5) [03:03:08] [worker #2] ML tree search #9, logLikelihood: -44459.698786 [03:04:48 -44475.578293] SLOW spr round 3 (radius: 5) [03:06:43 -44475.577901] SLOW spr round 4 (radius: 10) [03:08:28 -44474.659546] SLOW spr round 5 (radius: 5) [03:10:49 -44471.183612] SLOW spr round 6 (radius: 5) [03:12:54 -44470.868835] SLOW spr round 7 (radius: 5) [03:14:49 -44470.868623] SLOW spr round 8 (radius: 10) [03:16:33 -44470.868615] SLOW spr round 9 (radius: 15) [03:19:12 -44470.533127] SLOW spr round 10 (radius: 5) [03:21:39 -44470.533123] SLOW spr round 11 (radius: 10) [03:23:39 -44467.916265] SLOW spr round 12 (radius: 5) [03:25:34] [worker #1] ML tree search #11, logLikelihood: -44442.900344 [03:25:48 -44467.916263] SLOW spr round 13 (radius: 10) [03:27:38 -44467.916263] SLOW spr round 14 (radius: 15) [03:30:08 -44467.916263] SLOW spr round 15 (radius: 20) [03:34:18 -44467.916263] SLOW spr round 16 (radius: 25) [03:40:22 -44467.916263] Model parameter optimization (eps = 0.100000) [03:40:31] [worker #0] ML tree search #10, logLikelihood: -44467.747712 [03:40:31 -265190.924707] Initial branch length optimization [03:40:36 -222701.347785] Model parameter optimization (eps = 10.000000) [03:41:23 -221535.107194] AUTODETECT spr round 1 (radius: 5) [03:43:40 -132429.465923] AUTODETECT spr round 2 (radius: 10) [03:45:58 -89064.036047] AUTODETECT spr round 3 (radius: 15) [03:46:57] [worker #2] ML tree search #12, logLikelihood: -44468.622569 [03:48:22 -71585.558818] AUTODETECT spr round 4 (radius: 20) [03:50:59 -65376.881184] AUTODETECT spr round 5 (radius: 25) [03:53:59 -61009.222128] SPR radius for FAST iterations: 25 (autodetect) [03:53:59 -61009.222128] Model parameter optimization (eps = 3.000000) [03:54:16 -60978.889843] FAST spr round 1 (radius: 25) [03:56:31 -47000.400438] FAST spr round 2 (radius: 25) [03:58:27 -45243.310119] FAST spr round 3 (radius: 25) [04:00:13 -44630.386436] FAST spr round 4 (radius: 25) [04:01:46 -44464.881306] FAST spr round 5 (radius: 25) [04:03:13 -44463.427096] FAST spr round 6 (radius: 25) [04:04:38 -44463.427020] Model parameter optimization (eps = 1.000000) [04:04:49 -44459.233902] SLOW spr round 1 (radius: 5) [04:06:43 -44444.964598] SLOW spr round 2 (radius: 5) [04:08:35 -44444.964382] SLOW spr round 3 (radius: 10) [04:10:24 -44444.606575] SLOW spr round 4 (radius: 5) [04:12:45 -44444.606508] SLOW spr round 5 (radius: 10) [04:14:49 -44442.323498] SLOW spr round 6 (radius: 5) [04:17:01 -44442.323379] SLOW spr round 7 (radius: 10) [04:18:55 -44442.323369] SLOW spr round 8 (radius: 15) [04:21:31 -44442.323369] SLOW spr round 9 (radius: 20) [04:25:49 -44442.323369] SLOW spr round 10 (radius: 25) [04:30:41] [worker #1] ML tree search #14, logLikelihood: -44424.786237 [04:31:50 -44442.323369] Model parameter optimization (eps = 0.100000) [04:31:55] [worker #0] ML tree search #13, logLikelihood: -44442.233669 [04:31:55 -267130.026992] Initial branch length optimization [04:31:58 -224401.933230] Model parameter optimization (eps = 10.000000) [04:32:42 -223160.353541] AUTODETECT spr round 1 (radius: 5) [04:34:59 -132223.026716] AUTODETECT spr round 2 (radius: 10) [04:37:11 -84669.054762] AUTODETECT spr round 3 (radius: 15) [04:39:27 -69893.108809] AUTODETECT spr round 4 (radius: 20) [04:40:43] [worker #2] ML tree search #15, logLikelihood: -44431.997142 [04:42:12 -63228.424281] AUTODETECT spr round 5 (radius: 25) [04:45:23 -60826.826968] SPR radius for FAST iterations: 25 (autodetect) [04:45:23 -60826.826968] Model parameter optimization (eps = 3.000000) [04:45:42 -60818.092043] FAST spr round 1 (radius: 25) [04:47:54 -47308.407031] FAST spr round 2 (radius: 25) [04:49:53 -44936.198090] FAST spr round 3 (radius: 25) [04:51:37 -44487.604418] FAST spr round 4 (radius: 25) [04:53:17 -44463.658431] FAST spr round 5 (radius: 25) [04:54:48 -44460.529963] FAST spr round 6 (radius: 25) [04:56:17 -44460.529836] Model parameter optimization (eps = 1.000000) [04:56:28 -44454.028480] SLOW spr round 1 (radius: 5) [04:58:29 -44441.577398] SLOW spr round 2 (radius: 5) [05:00:23 -44441.486163] SLOW spr round 3 (radius: 10) [05:02:10 -44441.486108] SLOW spr round 4 (radius: 15) [05:04:45 -44441.486104] SLOW spr round 5 (radius: 20) [05:09:05 -44441.486104] SLOW spr round 6 (radius: 25) [05:14:36 -44441.486104] Model parameter optimization (eps = 0.100000) [05:14:38] [worker #0] ML tree search #16, logLikelihood: -44441.485540 [05:14:38 -264120.714228] Initial branch length optimization [05:14:42 -221709.748143] Model parameter optimization (eps = 10.000000) [05:15:30 -220675.457268] AUTODETECT spr round 1 (radius: 5) [05:17:40 -130468.208131] AUTODETECT spr round 2 (radius: 10) [05:19:51 -88673.570137] AUTODETECT spr round 3 (radius: 15) [05:22:12 -73303.577968] AUTODETECT spr round 4 (radius: 20) [05:24:54 -61191.467564] AUTODETECT spr round 5 (radius: 25) [05:28:22 -56823.767055] SPR radius for FAST iterations: 25 (autodetect) [05:28:22 -56823.767055] Model parameter optimization (eps = 3.000000) [05:28:44 -56793.101377] FAST spr round 1 (radius: 25) [05:30:42 -45640.808289] FAST spr round 2 (radius: 25) [05:32:24 -44578.243072] FAST spr round 3 (radius: 25) [05:33:28] [worker #2] ML tree search #18, logLikelihood: -44432.169657 [05:33:58 -44509.270771] FAST spr round 4 (radius: 25) [05:34:49] [worker #1] ML tree search #17, logLikelihood: -44420.680218 [05:35:31 -44474.433436] FAST spr round 5 (radius: 25) [05:36:56 -44474.199225] FAST spr round 6 (radius: 25) [05:38:19 -44474.199024] Model parameter optimization (eps = 1.000000) [05:38:28 -44473.311417] SLOW spr round 1 (radius: 5) [05:40:21 -44455.864054] SLOW spr round 2 (radius: 5) [05:42:13 -44454.820810] SLOW spr round 3 (radius: 5) [05:44:06 -44454.436076] SLOW spr round 4 (radius: 5) [05:45:53 -44454.436046] SLOW spr round 5 (radius: 10) [05:47:36 -44452.124460] SLOW spr round 6 (radius: 5) [05:49:48 -44451.624100] SLOW spr round 7 (radius: 5) [05:51:46 -44450.699224] SLOW spr round 8 (radius: 5) [05:53:37 -44450.699198] SLOW spr round 9 (radius: 10) [05:55:21 -44450.699198] SLOW spr round 10 (radius: 15) [05:58:08 -44450.674071] SLOW spr round 11 (radius: 20) [06:02:14 -44450.674071] SLOW spr round 12 (radius: 25) [06:07:27 -44450.674071] Model parameter optimization (eps = 0.100000) [06:07:36] [worker #0] ML tree search #19, logLikelihood: -44450.579653 [06:25:04] [worker #1] ML tree search #20, logLikelihood: -44432.691745 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.208841,0.407479) (0.286729,0.727037) (0.366042,1.208347) (0.138388,1.908644) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -44417.709141 AIC score: 92845.418282 / AICc score: 8136905.418282 / BIC score: 98998.571208 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=159). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43320/3_mltree/P43320.raxml.log Analysis started: 02-Jul-2021 01:02:21 / finished: 02-Jul-2021 07:27:26 Elapsed time: 23104.489 seconds Consumed energy: 1632.227 Wh (= 8 km in an electric car, or 41 km with an e-scooter!)