RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 10:59:53 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/2_msa/P43235_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/2_msa/P43235_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 340 sites

WARNING: Sequences tr_G3RH85_G3RH85_GORGO_9595 and tr_H2N5Y2_H2N5Y2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RH85_G3RH85_GORGO_9595 and sp_P43235_CATK_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RH85_G3RH85_GORGO_9595 and tr_A0A2R9C710_A0A2R9C710_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1K2A7_G1K2A7_CANLF_9615 and sp_Q3ZKN1_CATK_CANLF_9615 are exactly identical!
WARNING: Sequences tr_H2PZX3_H2PZX3_PANTR_9598 and tr_A0A2R9ABI2_A0A2R9ABI2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QXF0_H2QXF0_PANTR_9598 and sp_P07711_CATL1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2QXF0_H2QXF0_PANTR_9598 and tr_A0A2R9ACG6_A0A2R9ACG6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_I3JTA8_I3JTA8_ORENI_8128 and tr_I3K9F7_I3K9F7_ORENI_8128 are exactly identical!
WARNING: Sequences sp_P61277_CATK_MACMU_9544 and tr_G8F4A4_G8F4A4_MACFA_9541 are exactly identical!
WARNING: Sequences tr_B8AVK3_B8AVK3_ORYSI_39946 and tr_I1PQB7_I1PQB7_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A139WAQ9_A0A139WAQ9_TRICA_7070 and tr_D6X519_D6X519_TRICA_7070 are exactly identical!
WARNING: Sequences tr_B3RJ92_B3RJ92_TRIAD_10228 and tr_A0A369RVD3_A0A369RVD3_9METZ_287889 are exactly identical!
WARNING: Sequences tr_A0A140T8A8_A0A140T8A8_BOVIN_9913 and sp_Q5E968_CATK_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A0D2VVC5_A0A0D2VVC5_GOSRA_29730 and tr_A0A1U8PLV8_A0A1U8PLV8_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A1S3YK82_A0A1S3YK82_TOBAC_4097 and tr_A0A1U7VR49_A0A1U7VR49_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4BH89_A0A1S4BH89_TOBAC_4097 and tr_A0A1U7Y4A6_A0A1U7Y4A6_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A2D0RMQ5_A0A2D0RMQ5_ICTPU_7998 and tr_W5U979_W5U979_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SDD8_A0A2D0SDD8_ICTPU_7998 and tr_A0A2D0SDE6_A0A2D0SDE6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0SDE1_A0A2D0SDE1_ICTPU_7998 and tr_A0A2D0SER4_A0A2D0SER4_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2K5MJ12_A0A2K5MJ12_CERAT_9531 and tr_A0A2K5Z597_A0A2K5Z597_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A2K5MTN4_A0A2K5MTN4_CERAT_9531 and tr_A0A2K5XQ71_A0A2K5XQ71_MANLE_9568 are exactly identical!
WARNING: Duplicate sequences found: 21

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.reduced.phy

Alignment comprises 1 partitions and 340 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 340 / 340
Gaps: 6.56 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 340 / 27200
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -539244.378980] Initial branch length optimization
[00:00:06 -466958.807782] Model parameter optimization (eps = 10.000000)
[00:01:01 -465943.193461] AUTODETECT spr round 1 (radius: 5)
[00:05:11 -375416.375233] AUTODETECT spr round 2 (radius: 10)
[00:10:03 -297212.844854] AUTODETECT spr round 3 (radius: 15)
[00:15:25 -255704.217060] AUTODETECT spr round 4 (radius: 20)
[00:22:37 -240668.759205] AUTODETECT spr round 5 (radius: 25)
[00:32:20 -240211.878373] SPR radius for FAST iterations: 25 (autodetect)
[00:32:20 -240211.878373] Model parameter optimization (eps = 3.000000)
[00:32:58 -240023.170569] FAST spr round 1 (radius: 25)
[00:40:21 -217818.793839] FAST spr round 2 (radius: 25)
[00:45:20 -216785.391970] FAST spr round 3 (radius: 25)
[00:49:35 -216713.998818] FAST spr round 4 (radius: 25)
[00:53:08 -216702.478317] FAST spr round 5 (radius: 25)
[00:56:16 -216701.052240] FAST spr round 6 (radius: 25)
[00:59:14 -216701.052239] Model parameter optimization (eps = 1.000000)
[00:59:41 -216686.830114] SLOW spr round 1 (radius: 5)
[01:04:15 -216617.760615] SLOW spr round 2 (radius: 5)
[01:08:25 -216612.275469] SLOW spr round 3 (radius: 5)
[01:12:25 -216609.635739] SLOW spr round 4 (radius: 5)
[01:16:20 -216609.635721] SLOW spr round 5 (radius: 10)
[01:20:33 -216606.022338] SLOW spr round 6 (radius: 5)
[01:25:32 -216603.012228] SLOW spr round 7 (radius: 5)
[01:29:53 -216602.477486] SLOW spr round 8 (radius: 5)
[01:33:58 -216601.212910] SLOW spr round 9 (radius: 5)
[01:37:56 -216601.212837] SLOW spr round 10 (radius: 10)
[01:42:07 -216600.215145] SLOW spr round 11 (radius: 5)
[01:47:01 -216599.215550] SLOW spr round 12 (radius: 5)
[01:51:20 -216599.215245] SLOW spr round 13 (radius: 10)
[01:55:44 -216592.985188] SLOW spr round 14 (radius: 5)
[02:00:40 -216583.553343] SLOW spr round 15 (radius: 5)
[02:04:59 -216582.854426] SLOW spr round 16 (radius: 5)
[02:09:02 -216582.854383] SLOW spr round 17 (radius: 10)
[02:13:16 -216581.216451] SLOW spr round 18 (radius: 5)
[02:18:11 -216576.828708] SLOW spr round 19 (radius: 5)
[02:22:03] [worker #4] ML tree search #5, logLikelihood: -216560.334741
[02:22:15] [worker #3] ML tree search #4, logLikelihood: -216561.231692
[02:22:32 -216572.410667] SLOW spr round 20 (radius: 5)
[02:26:36 -216572.410555] SLOW spr round 21 (radius: 10)
[02:29:11] [worker #1] ML tree search #2, logLikelihood: -216612.946255
[02:30:51 -216572.410553] SLOW spr round 22 (radius: 15)
[02:39:12 -216572.410553] SLOW spr round 23 (radius: 20)
[02:52:03 -216572.410553] SLOW spr round 24 (radius: 25)
[03:11:17 -216572.410553] Model parameter optimization (eps = 0.100000)

[03:11:47] [worker #0] ML tree search #1, logLikelihood: -216571.713964

[03:11:47 -542096.813731] Initial branch length optimization
[03:11:53 -469582.622282] Model parameter optimization (eps = 10.000000)
[03:13:01 -468537.226168] AUTODETECT spr round 1 (radius: 5)
[03:14:59] [worker #2] ML tree search #3, logLikelihood: -216603.107583
[03:18:05 -373181.956878] AUTODETECT spr round 2 (radius: 10)
[03:24:03 -288776.038777] AUTODETECT spr round 3 (radius: 15)
[03:30:10 -255122.972937] AUTODETECT spr round 4 (radius: 20)
[03:37:51 -242928.506568] AUTODETECT spr round 5 (radius: 25)
[03:46:54 -241244.026865] SPR radius for FAST iterations: 25 (autodetect)
[03:46:54 -241244.026865] Model parameter optimization (eps = 3.000000)
[03:47:32 -241032.917835] FAST spr round 1 (radius: 25)
[03:55:55 -217781.640999] FAST spr round 2 (radius: 25)
[04:01:44 -216813.295569] FAST spr round 3 (radius: 25)
[04:06:17 -216723.373507] FAST spr round 4 (radius: 25)
[04:10:04 -216709.244470] FAST spr round 5 (radius: 25)
[04:13:46 -216709.244385] Model parameter optimization (eps = 1.000000)
[04:14:27 -216708.070577] SLOW spr round 1 (radius: 5)
[04:19:52 -216653.105348] SLOW spr round 2 (radius: 5)
[04:24:53 -216647.975799] SLOW spr round 3 (radius: 5)
[04:29:03 -216647.975694] SLOW spr round 4 (radius: 10)
[04:33:19 -216647.975693] SLOW spr round 5 (radius: 15)
[04:41:39 -216642.334102] SLOW spr round 6 (radius: 5)
[04:46:56 -216639.229452] SLOW spr round 7 (radius: 5)
[04:51:39 -216631.050285] SLOW spr round 8 (radius: 5)
[04:55:55 -216630.189420] SLOW spr round 9 (radius: 5)
[05:00:02 -216630.189273] SLOW spr round 10 (radius: 10)
[05:02:11] [worker #4] ML tree search #10, logLikelihood: -216605.315072
[05:04:18 -216629.523147] SLOW spr round 11 (radius: 5)
[05:09:21 -216627.315975] SLOW spr round 12 (radius: 5)
[05:13:48 -216627.315712] SLOW spr round 13 (radius: 10)
[05:18:16 -216627.315702] SLOW spr round 14 (radius: 15)
[05:24:47] [worker #1] ML tree search #7, logLikelihood: -216616.729032
[05:26:06 -216626.998217] SLOW spr round 15 (radius: 5)
[05:31:37 -216626.997940] SLOW spr round 16 (radius: 10)
[05:37:30 -216626.997936] SLOW spr round 17 (radius: 15)
[05:44:59 -216620.535019] SLOW spr round 18 (radius: 5)
[05:50:12 -216619.357290] SLOW spr round 19 (radius: 5)
[05:54:46 -216619.356825] SLOW spr round 20 (radius: 10)
[05:56:00] [worker #2] ML tree search #8, logLikelihood: -216593.004015
[05:59:20 -216619.356823] SLOW spr round 21 (radius: 15)
[06:07:00 -216619.356823] SLOW spr round 22 (radius: 20)
[06:19:50 -216619.356823] SLOW spr round 23 (radius: 25)
[06:24:06] [worker #3] ML tree search #9, logLikelihood: -217096.029053
[06:37:28 -216619.356823] Model parameter optimization (eps = 0.100000)

[06:37:43] [worker #0] ML tree search #6, logLikelihood: -216618.936012

[06:37:43 -541760.078251] Initial branch length optimization
[06:37:49 -469198.942324] Model parameter optimization (eps = 10.000000)
[06:38:45 -468183.569182] AUTODETECT spr round 1 (radius: 5)
[06:43:08 -376791.334106] AUTODETECT spr round 2 (radius: 10)
[06:48:23 -295124.353263] AUTODETECT spr round 3 (radius: 15)
[06:53:58 -264994.686152] AUTODETECT spr round 4 (radius: 20)
[07:01:18 -245260.567280] AUTODETECT spr round 5 (radius: 25)
[07:10:06 -241066.806502] SPR radius for FAST iterations: 25 (autodetect)
[07:10:06 -241066.806502] Model parameter optimization (eps = 3.000000)
[07:10:39 -240862.417428] FAST spr round 1 (radius: 25)
[07:18:30 -217814.097942] FAST spr round 2 (radius: 25)
[07:23:44 -216840.765887] FAST spr round 3 (radius: 25)
[07:27:57 -216751.398544] FAST spr round 4 (radius: 25)
[07:31:35 -216723.137132] FAST spr round 5 (radius: 25)
[07:34:58 -216710.305588] FAST spr round 6 (radius: 25)
[07:38:20 -216704.909983] FAST spr round 7 (radius: 25)
[07:41:32 -216699.435868] FAST spr round 8 (radius: 25)
[07:44:32 -216698.679928] FAST spr round 9 (radius: 25)
[07:47:30 -216698.679880] Model parameter optimization (eps = 1.000000)
[07:47:53 -216693.572079] SLOW spr round 1 (radius: 5)
[07:52:32 -216627.671525] SLOW spr round 2 (radius: 5)
[07:56:59 -216613.414397] SLOW spr round 3 (radius: 5)
[08:01:02 -216613.414201] SLOW spr round 4 (radius: 10)
[08:04:47] [worker #4] ML tree search #15, logLikelihood: -216591.621226
[08:05:18 -216611.979882] SLOW spr round 5 (radius: 5)
[08:10:20 -216611.979555] SLOW spr round 6 (radius: 10)
[08:15:17 -216611.588405] SLOW spr round 7 (radius: 5)
[08:20:10 -216611.290272] SLOW spr round 8 (radius: 5)
[08:24:32 -216611.290090] SLOW spr round 9 (radius: 10)
[08:28:58 -216608.936775] SLOW spr round 10 (radius: 5)
[08:33:02] [worker #3] ML tree search #14, logLikelihood: -216582.707909
[08:34:11 -216595.963463] SLOW spr round 11 (radius: 5)
[08:38:36 -216595.963203] SLOW spr round 12 (radius: 10)
[08:43:01 -216595.688590] SLOW spr round 13 (radius: 5)
[08:44:12] [worker #1] ML tree search #12, logLikelihood: -216653.622279
[08:48:01 -216588.858386] SLOW spr round 14 (radius: 5)
[08:52:29 -216579.434252] SLOW spr round 15 (radius: 5)
[08:56:38 -216578.006317] SLOW spr round 16 (radius: 5)
[09:00:42 -216578.005973] SLOW spr round 17 (radius: 10)
[09:04:54 -216578.005968] SLOW spr round 18 (radius: 15)
[09:12:57 -216572.942956] SLOW spr round 19 (radius: 5)
[09:18:11 -216572.942860] SLOW spr round 20 (radius: 10)
[09:19:27] [worker #2] ML tree search #13, logLikelihood: -216588.926882
[09:23:26 -216572.942859] SLOW spr round 21 (radius: 15)
[09:30:50 -216572.942859] SLOW spr round 22 (radius: 20)
[09:42:38 -216572.942859] SLOW spr round 23 (radius: 25)
[09:57:23 -216572.942859] Model parameter optimization (eps = 0.100000)

[09:57:36] [worker #0] ML tree search #11, logLikelihood: -216572.687168

[09:57:36 -539509.119364] Initial branch length optimization
[09:57:41 -468774.755108] Model parameter optimization (eps = 10.000000)
[09:58:32 -467775.303060] AUTODETECT spr round 1 (radius: 5)
[10:02:47 -376649.432333] AUTODETECT spr round 2 (radius: 10)
[10:07:54 -295074.277354] AUTODETECT spr round 3 (radius: 15)
[10:13:26 -256744.420567] AUTODETECT spr round 4 (radius: 20)
[10:22:08 -244147.427454] AUTODETECT spr round 5 (radius: 25)
[10:34:13 -241379.997000] SPR radius for FAST iterations: 25 (autodetect)
[10:34:13 -241379.997000] Model parameter optimization (eps = 3.000000)
[10:34:53 -241200.403951] FAST spr round 1 (radius: 25)
[10:42:53 -217602.602763] FAST spr round 2 (radius: 25)
[10:43:43] [worker #3] ML tree search #19, logLikelihood: -216581.989182
[10:48:22 -216783.490673] FAST spr round 3 (radius: 25)
[10:52:39 -216738.664017] FAST spr round 4 (radius: 25)
[10:56:13 -216719.805016] FAST spr round 5 (radius: 25)
[10:59:23 -216719.804897] Model parameter optimization (eps = 1.000000)
[10:59:48 -216717.590346] SLOW spr round 1 (radius: 5)
[11:01:43] [worker #1] ML tree search #17, logLikelihood: -216591.632180
[11:04:35 -216667.776669] SLOW spr round 2 (radius: 5)
[11:06:27] [worker #4] ML tree search #20, logLikelihood: -216642.496041
[11:09:08 -216645.138630] SLOW spr round 3 (radius: 5)
[11:13:26 -216622.360232] SLOW spr round 4 (radius: 5)
[11:18:23 -216612.721035] SLOW spr round 5 (radius: 5)
[11:25:42 -216608.310211] SLOW spr round 6 (radius: 5)
[11:32:43 -216608.310205] SLOW spr round 7 (radius: 10)
[11:40:06 -216603.114432] SLOW spr round 8 (radius: 5)
[11:49:08 -216599.731499] SLOW spr round 9 (radius: 5)
[11:56:58 -216599.668950] SLOW spr round 10 (radius: 10)
[12:04:46 -216598.294331] SLOW spr round 11 (radius: 5)
[12:13:39 -216594.857265] SLOW spr round 12 (radius: 5)
[12:21:37 -216590.479564] SLOW spr round 13 (radius: 5)
[12:24:46] [worker #2] ML tree search #18, logLikelihood: -216592.354386
[12:29:01 -216590.479465] SLOW spr round 14 (radius: 10)
[12:36:32 -216590.479438] SLOW spr round 15 (radius: 15)
[12:51:12 -216585.908186] SLOW spr round 16 (radius: 5)
[13:00:13 -216583.740058] SLOW spr round 17 (radius: 5)
[13:07:52 -216583.739827] SLOW spr round 18 (radius: 10)
[13:15:27 -216583.739825] SLOW spr round 19 (radius: 15)
[13:28:34 -216583.413635] SLOW spr round 20 (radius: 5)
[13:37:14 -216579.200719] SLOW spr round 21 (radius: 5)
[13:44:40 -216578.836011] SLOW spr round 22 (radius: 5)
[13:51:34 -216578.835756] SLOW spr round 23 (radius: 10)
[13:58:28 -216578.835751] SLOW spr round 24 (radius: 15)
[14:11:44 -216578.835751] SLOW spr round 25 (radius: 20)
[14:31:49 -216578.835751] SLOW spr round 26 (radius: 25)
[14:58:26 -216578.835751] Model parameter optimization (eps = 0.100000)

[14:58:58] [worker #0] ML tree search #16, logLikelihood: -216576.392688


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.183608,0.317150) (0.208434,0.357294) (0.331498,0.973367) (0.276460,1.970004) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -216560.334741

AIC score: 437130.669482 / AICc score: 8481190.669482 / BIC score: 444807.705446
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=340).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 34 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P43235/3_mltree/P43235.raxml.log

Analysis started: 02-Jul-2021 10:59:53 / finished: 03-Jul-2021 01:58:52

Elapsed time: 53938.933 seconds

Consumed energy: 4377.298 Wh (= 22 km in an electric car, or 109 km with an e-scooter!)