RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:38:13 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/2_msa/P43034_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/3_mltree/P43034.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648293 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/2_msa/P43034_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 410 sites WARNING: Sequences sp_B4QHG6_LIS1_DROSI_7240 and sp_Q7KNS3_LIS1_DROME_7227 are exactly identical! WARNING: Sequences sp_B4QHG6_LIS1_DROSI_7240 and sp_B4HSL3_LIS1_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_U3JQ84_U3JQ84_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_U3I888_U3I888_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A091ELB1_A0A091ELB1_CORBR_85066 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A093Q9U6_A0A093Q9U6_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A091VP83_A0A091VP83_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A099ZM26_A0A099ZM26_TINGU_94827 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A091GF22_A0A091GF22_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A0A0A8X2_A0A0A0A8X2_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A2I0LYM5_A0A2I0LYM5_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A093I526_A0A093I526_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A091J2Q7_A0A091J2Q7_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A1V4K3H5_A0A1V4K3H5_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9PTR5_LIS1_CHICK_9031 and tr_A0A218ULX8_A0A218ULX8_9PASE_299123 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_M3YN51_M3YN51_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_G3HVB8_G3HVB8_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_H2NS76_H2NS76_PONAB_9601 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_E2QY31_E2QY31_CANLF_9615 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_F6PQP7_F6PQP7_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_W5Q3A5_W5Q3A5_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and sp_P63004_LIS1_RAT_10116 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A286X9T9_A0A286X9T9_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_F7HWL4_F7HWL4_CALJA_9483 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_F2Z521_F2Z521_PIG_9823 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A5D7P3_A5D7P3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_L5JRF9_L5JRF9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and sp_B0LSW3_LIS1_FELCA_9685 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A1S2ZKN5_A0A1S2ZKN5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A1S3F6L3_A0A1S3F6L3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A1U7ULY2_A0A1U7ULY2_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A3Q0CL92_A0A3Q0CL92_MESAU_10036 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A2U3W7I7_A0A2U3W7I7_ODORO_9708 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A2Y9K6B9_A0A2Y9K6B9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P63005_LIS1_MOUSE_10090 and tr_A0A384CF69_A0A384CF69_URSMA_29073 are exactly identical! WARNING: Sequences sp_B6HP56_LIS11_PENRW_500485 and tr_A0A1V6ZAH4_A0A1V6ZAH4_PENNA_60175 are exactly identical! WARNING: Sequences sp_B6QC56_LIS11_TALMQ_441960 and tr_A0A093UVU3_A0A093UVU3_TALMA_1077442 are exactly identical! WARNING: Sequences sp_B2VWG7_LIS1_PYRTR_426418 and tr_A0A2W1FY70_A0A2W1FY70_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G3QRE7_G3QRE7_GORGO_9595 and tr_A0A2I3SN67_A0A2I3SN67_PANTR_9598 are exactly identical! WARNING: Sequences sp_C0NRC6_LIS1_AJECG_447093 and sp_C6HTE8_LIS1_AJECH_544712 are exactly identical! WARNING: Sequences sp_B8P4B0_LIS11_POSPM_561896 and tr_A0A1X6MMZ5_A0A1X6MMZ5_9APHY_670580 are exactly identical! WARNING: Sequences sp_Q291L9_LIS1_DROPS_46245 and sp_B4GAJ1_LIS1_DROPE_7234 are exactly identical! WARNING: Sequences sp_B8N9H4_LIS1_ASPFN_332952 and sp_Q2UGU1_LIS1_ASPOR_510516 are exactly identical! WARNING: Sequences sp_C5JD40_LIS1_BLAGS_559298 and sp_C5GVJ9_LIS1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A158NGQ5_A0A158NGQ5_ATTCE_12957 and tr_F4WZK2_F4WZK2_ACREC_103372 are exactly identical! WARNING: Sequences tr_G9NZP8_G9NZP8_HYPAI_452589 and tr_A0A2T3ZI23_A0A2T3ZI23_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_A0A0K0JGB6_A0A0K0JGB6_BRUMA_6279 and tr_A0A0N4TQU5_A0A0N4TQU5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0JGB6_A0A0K0JGB6_BRUMA_6279 and tr_A0A0R3QPQ5_A0A0R3QPQ5_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0JGB6_A0A0K0JGB6_BRUMA_6279 and tr_A0A1I7V8Z2_A0A1I7V8Z2_LOALO_7209 are exactly identical! WARNING: Sequences sp_A2QP30_LIS1_ASPNC_425011 and tr_G3XZB8_G3XZB8_ASPNA_380704 are exactly identical! WARNING: Sequences sp_A2QP30_LIS1_ASPNC_425011 and tr_A0A319A8Q8_A0A319A8Q8_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7AE78_F7AE78_MACMU_9544 and tr_A0A2K5P275_A0A2K5P275_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7AE78_F7AE78_MACMU_9544 and tr_A0A2K5Y471_A0A2K5Y471_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XE33_G7XE33_ASPKW_1033177 and tr_A0A100ID25_A0A100ID25_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XE33_G7XE33_ASPKW_1033177 and tr_A0A146F2V1_A0A146F2V1_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XE33_G7XE33_ASPKW_1033177 and tr_A0A1L9MYW2_A0A1L9MYW2_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XE33_G7XE33_ASPKW_1033177 and tr_A0A317W325_A0A317W325_9EURO_1448314 are exactly identical! WARNING: Sequences tr_F9X6B3_F9X6B3_ZYMTI_336722 and tr_A0A1X7RPN4_A0A1X7RPN4_ZYMTR_1276538 are exactly identical! WARNING: Sequences sp_Q6NZH4_LIS1_XENTR_8364 and tr_A0A1L8H632_A0A1L8H632_XENLA_8355 are exactly identical! WARNING: Sequences tr_G2Y5X3_G2Y5X3_BOTF4_999810 and tr_M7U0H4_M7U0H4_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SID0_F2SID0_TRIRC_559305 and tr_A0A178F0U5_A0A178F0U5_TRIRU_5551 are exactly identical! WARNING: Sequences sp_D4AZ50_LIS1_ARTBC_663331 and tr_F2Q5J0_F2Q5J0_TRIEC_559882 are exactly identical! WARNING: Sequences sp_B3S4I5_LIS1_TRIAD_10228 and tr_A0A369RZB7_A0A369RZB7_9METZ_287889 are exactly identical! WARNING: Sequences tr_N4TIM3_N4TIM3_FUSC1_1229664 and tr_X0C4X2_X0C4X2_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_N4TIM3_N4TIM3_FUSC1_1229664 and tr_A0A2H3T7X2_A0A2H3T7X2_FUSOX_5507 are exactly identical! WARNING: Sequences tr_M2SM27_M2SM27_COCSN_665912 and tr_W6YYR3_W6YYR3_COCMI_930090 are exactly identical! WARNING: Sequences tr_M2V0R7_M2V0R7_COCH5_701091 and tr_W6YKD7_W6YKD7_COCCA_930089 are exactly identical! WARNING: Sequences tr_V2XXU6_V2XXU6_MONRO_1381753 and tr_A0A0W0FVW5_A0A0W0FVW5_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QFI0_W2QFI0_PHYPN_761204 and tr_W2LIX4_W2LIX4_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A044SU88_A0A044SU88_ONCVO_6282 and tr_A0A182ELQ1_A0A182ELQ1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A094E341_A0A094E341_9PEZI_1420912 and tr_A0A1B8GTU7_A0A1B8GTU7_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094EVI8_A0A094EVI8_9PEZI_1420912 and tr_A0A1B8GN68_A0A1B8GN68_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0A2VW06_A0A0A2VW06_BEABA_1245745 and tr_A0A2N6NG18_A0A2N6NG18_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A0F8V2Z3_A0A0F8V2Z3_9EURO_308745 and tr_A0A2T5M9Z3_A0A2T5M9Z3_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A151N5M3_A0A151N5M3_ALLMI_8496 and tr_A0A1U7R2D1_A0A1U7R2D1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A087R072_A0A087R072_APTFO_9233 and tr_A0A093GYW7_A0A093GYW7_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A0V0XAM0_A0A0V0XAM0_9BILA_92179 and tr_A0A0V0VXD9_A0A0V0VXD9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0XAM0_A0A0V0XAM0_9BILA_92179 and tr_A0A0V1LPS2_A0A0V1LPS2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0XAM0_A0A0V0XAM0_9BILA_92179 and tr_A0A0V1PNT4_A0A0V1PNT4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0XAM0_A0A0V0XAM0_9BILA_92179 and tr_A0A0V0UDB7_A0A0V0UDB7_9BILA_144512 are exactly identical! WARNING: Sequences sp_Q4ICM0_LIS1_GIBZE_229533 and tr_A0A2T4GP27_A0A2T4GP27_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A1S3SZD2_A0A1S3SZD2_SALSA_8030 and sp_B5X3Z6_LIS1A_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1L9WZR0_A0A1L9WZR0_ASPAC_690307 and tr_A0A319BTY6_A0A319BTY6_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WZR0_A0A1L9WZR0_ASPAC_690307 and tr_A0A2V5HUX9_A0A2V5HUX9_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WZR0_A0A1L9WZR0_ASPAC_690307 and tr_A0A2V5HDR5_A0A2V5HDR5_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V6N5Y6_A0A1V6N5Y6_9EURO_60169 and tr_A0A1V6RJL0_A0A1V6RJL0_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A2H3BU99_A0A2H3BU99_9AGAR_1076256 and tr_A0A284QYB3_A0A284QYB3_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2Y9Q314_A0A2Y9Q314_DELLE_9749 and tr_A0A2Y9FLM5_A0A2Y9FLM5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9Q314_A0A2Y9Q314_DELLE_9749 and tr_A0A383ZQX9_A0A383ZQX9_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 89 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.reduced.phy Alignment comprises 1 partitions and 410 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 410 Gaps: 7.78 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/3_mltree/P43034.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 103 / 8240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -193272.860098 [00:00:00 -193272.860098] Initial branch length optimization [00:00:01 -190669.911964] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -189959.814581 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.185609,0.498186) (0.239534,0.609032) (0.398986,1.004275) (0.175870,2.052396) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P43034/4_raxmlng_ancestral/P43034.raxml.log Analysis started: 02-Jun-2021 18:38:13 / finished: 02-Jun-2021 18:38:56 Elapsed time: 42.839 seconds Consumed energy: 3.784 Wh