RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jun-2021 19:57:47 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/2_msa/P42771_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/3_mltree/P42771.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1624121867 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/2_msa/P42771_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 156 sites WARNING: Sequences tr_B4QVC8_B4QVC8_DROSI_7240 and sp_Q9VBP3_TNKS_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QVC8_B4QVC8_DROSI_7240 and tr_B4ICC0_B4ICC0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QVC8_B4QVC8_DROSI_7240 and tr_B3LYN0_B3LYN0_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QVC8_B4QVC8_DROSI_7240 and tr_B4K4W1_B4K4W1_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QVC8_B4QVC8_DROSI_7240 and tr_A0A1W4VM02_A0A1W4VM02_DROFC_30025 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_G1N9L0_G1N9L0_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_K7F661_K7F661_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_H0Z388_H0Z388_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A151MPQ8_A0A151MPQ8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A093PN75_A0A093PN75_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A091VYZ7_A0A091VYZ7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A087R9R8_A0A087R9R8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A0A0B1U0_A0A0A0B1U0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P3S3_A0A1D5P3S3_CHICK_9031 and tr_A0A1V4JSV4_A0A1V4JSV4_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C2Z8_E1C2Z8_CHICK_9031 and tr_A0A151MQQ6_A0A151MQQ6_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1N8D6_F1N8D6_CHICK_9031 and tr_A0A0Q3UU14_A0A0Q3UU14_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1N8D6_F1N8D6_CHICK_9031 and tr_A0A093G4V1_A0A093G4V1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1N8D6_F1N8D6_CHICK_9031 and tr_A0A1V4KJ85_A0A1V4KJ85_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1N8D6_F1N8D6_CHICK_9031 and tr_A0A226MYW1_A0A226MYW1_CALSU_9009 are exactly identical! WARNING: Sequences sp_A2A690_TANC2_MOUSE_10090 and tr_A0A0G2K9J0_A0A0G2K9J0_RAT_10116 are exactly identical! WARNING: Sequences sp_A2A690_TANC2_MOUSE_10090 and tr_A0A091D9I1_A0A091D9I1_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q6PFX9_TNKS1_MOUSE_10090 and tr_D3Z8Q6_D3Z8Q6_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6PFX9_TNKS1_MOUSE_10090 and tr_A0A2Y9DY58_A0A2Y9DY58_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q91WK7_ANR54_MOUSE_10090 and sp_Q566C8_ANR54_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_J9NX64_J9NX64_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_G1MGH8_G1MGH8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_A0A2I2U8M6_A0A2I2U8M6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_A0A2U3VXR3_A0A2U3VXR3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_A0A2Y9IYD8_A0A2Y9IYD8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y6X3_M3Y6X3_MUSPF_9669 and tr_A0A384CRK5_A0A384CRK5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_G3R7R9_G3R7R9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_H2PPK7_H2PPK7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_H9G6R5_H9G6R5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_E2QU22_E2QU22_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_K7B8U9_K7B8U9_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_F7C5G6_F7C5G6_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_F7CLG0_F7CLG0_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_W5PKC3_W5PKC3_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_I3MN40_I3MN40_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_H0WW38_H0WW38_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A286XUG8_A0A286XUG8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and sp_O95271_TNKS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_F6QQJ9_F6QQJ9_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_G5AV65_G5AV65_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_G3SUY2_G3SUY2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_U3EDJ7_U3EDJ7_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A286ZY03_A0A286ZY03_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_G7PCK6_G7PCK6_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_E1B8R5_E1B8R5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_L5KE57_L5KE57_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2I2U8U2_A0A2I2U8U2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A096NPS8_A0A096NPS8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A091E1F5_A0A091E1F5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A0D9RWD5_A0A0D9RWD5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A1S2ZIU0_A0A1S2ZIU0_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2K5MTQ2_A0A2K5MTQ2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2K6DKG0_A0A2K6DKG0_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2K5Y595_A0A2K5Y595_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2R9A9V7_A0A2R9A9V7_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2U3UYI9_A0A2U3UYI9_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2U3WHV3_A0A2U3WHV3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2U3YA73_A0A2U3YA73_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2Y9J402_A0A2Y9J402_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2Y9MY83_A0A2Y9MY83_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A2Y9TAM5_A0A2Y9TAM5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A384BQD6_A0A384BQD6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YIY4_M3YIY4_MUSPF_9669 and tr_A0A383ZG30_A0A383ZG30_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YNA7_M3YNA7_MUSPF_9669 and tr_E2QSJ6_E2QSJ6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YNA7_M3YNA7_MUSPF_9669 and tr_F1SKL6_F1SKL6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YNA7_M3YNA7_MUSPF_9669 and tr_A0A2Y9KM81_A0A2Y9KM81_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YU66_M3YU66_MUSPF_9669 and tr_A0A2Y9KWV9_A0A2Y9KWV9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_G3UQZ8_G3UQZ8_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_H0ZE07_H0ZE07_TAEGU_59729 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_G7PDJ7_G7PDJ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_U3JZC6_U3JZC6_FICAL_59894 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_U3IUH3_U3IUH3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A091ECX5_A0A091ECX5_CORBR_85066 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A091JG12_A0A091JG12_EGRGA_188379 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A093STS1_A0A093STS1_9PASS_328815 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A091UK00_A0A091UK00_NIPNI_128390 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A087QZ30_A0A087QZ30_APTFO_9233 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A093HTI6_A0A093HTI6_STRCA_441894 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A091XE31_A0A091XE31_OPIHO_30419 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A091G9X8_A0A091G9X8_9AVES_55661 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A0A0AQL1_A0A0A0AQL1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A2I0LY50_A0A2I0LY50_COLLI_8932 are exactly identical! WARNING: Sequences tr_M3Z0L2_M3Z0L2_MUSPF_9669 and tr_A0A3Q0HAC7_A0A3Q0HAC7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_F6Z3C1_F6Z3C1_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_G7PV39_G7PV39_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_A0A2I3M3D2_A0A2I3M3D2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_A0A0D9QV32_A0A0D9QV32_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_A0A2K5MII5_A0A2K5MII5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_A0A2K6B590_A0A2K6B590_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HW03_A0A2I3HW03_NOMLE_61853 and tr_A0A2K5ZCJ1_A0A2K5ZCJ1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_G3S4C5_G3S4C5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_H2PE56_H2PE56_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_H2R3U2_H2R3U2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and sp_Q01484_ANK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_F7H4E0_F7H4E0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2R8MG44_A0A2R8MG44_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_G7P649_G7P649_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A096N0E1_A0A096N0E1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A0D9QUX9_A0A0D9QUX9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2K5MCB6_A0A2K5MCB6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2K5YPQ5_A0A2K5YPQ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S2U2_G1S2U2_NOMLE_61853 and tr_A0A2R9BUB3_A0A2R9BUB3_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_G3R2V0_G3R2V0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_G1T2F9_G1T2F9_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_J9P7A0_J9P7A0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_H2Q295_H2Q295_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_W5Q468_W5Q468_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_I3M092_I3M092_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_H0XKA7_H0XKA7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and sp_Q9H2K2_TNKS2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_G5BV11_G5BV11_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_G3UKE2_G3UKE2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_F7CVA7_F7CVA7_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_F1SCW9_F1SCW9_PIG_9823 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_G1M710_G1M710_AILME_9646 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_L5JS00_L5JS00_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_M3WLN7_M3WLN7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A096P5H6_A0A096P5H6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A0D9R2P6_A0A0D9R2P6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2K5MCR0_A0A2K5MCR0_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2K6CP90_A0A2K6CP90_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2R9BZG6_A0A2R9BZG6_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2U4C0X5_A0A2U4C0X5_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2U3WPN8_A0A2U3WPN8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2Y9J2G3_A0A2Y9J2G3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2Y9MRS4_A0A2Y9MRS4_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3ZAS3_M3ZAS3_NOMLE_61853 and tr_A0A2Y9SMP1_A0A2Y9SMP1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1P244_G1P244_MYOLU_59463 and tr_A0A1S2ZBK9_A0A1S2ZBK9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G3GVX9_G3GVX9_CRIGR_10029 and tr_Q8R5G4_Q8R5G4_RAT_10116 are exactly identical! WARNING: Sequences tr_G3GVX9_G3GVX9_CRIGR_10029 and tr_A0A1U7QPZ2_A0A1U7QPZ2_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3HGE2_G3HGE2_CRIGR_10029 and tr_G5BDK2_G5BDK2_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2I2Y2S4_A0A2I2Y2S4_GORGO_9595 and tr_A0A2I3RI89_A0A2I3RI89_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y2S4_A0A2I2Y2S4_GORGO_9595 and sp_Q9HCD6_TANC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Y2S4_A0A2I2Y2S4_GORGO_9595 and tr_A0A2R9AP13_A0A2R9AP13_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QPM8_G3QPM8_GORGO_9595 and tr_H2NXJ9_H2NXJ9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QZR9_G3QZR9_GORGO_9595 and tr_A0A2J8QX46_A0A2J8QX46_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZR9_G3QZR9_GORGO_9595 and sp_Q8WXK1_ASB15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QZR9_G3QZR9_GORGO_9595 and tr_A0A2R9AAB1_A0A2R9AAB1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2J8V8H6_A0A2J8V8H6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_H2PZ05_H2PZ05_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and sp_P42773_CDN2C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_F6QTJ3_F6QTJ3_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_G8F3B6_G8F3B6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2I3M0Q8_A0A2I3M0Q8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A0D9S7B4_A0A0D9S7B4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2K5L989_A0A2K5L989_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2K6BUQ3_A0A2K6BUQ3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2K5ZQJ3_A0A2K5ZQJ3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RLG5_G3RLG5_GORGO_9595 and tr_A0A2R9BLT8_A0A2R9BLT8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A091V5Y3_A0A091V5Y3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A087RJY1_A0A087RJY1_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A093JU25_A0A093JU25_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A091G422_A0A091G422_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A0A0ATJ5_A0A0A0ATJ5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A093J8C3_A0A093J8C3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A091HY46_A0A091HY46_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A1U7RGI2_A0A1U7RGI2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1NEG1_G1NEG1_MELGA_9103 and tr_A0A1V4KC98_A0A1V4KC98_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1P6P1_F1P6P1_CANLF_9615 and tr_A0A337SR04_A0A337SR04_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1P6P1_F1P6P1_CANLF_9615 and tr_A0A2U3WE70_A0A2U3WE70_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1P6P1_F1P6P1_CANLF_9615 and tr_A0A2Y9K0E1_A0A2Y9K0E1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1P6P1_F1P6P1_CANLF_9615 and tr_A0A384BYK5_A0A384BYK5_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1PAF9_F1PAF9_CANLF_9615 and tr_M3VXU8_M3VXU8_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2J8LWA9_A0A2J8LWA9_PANTR_9598 and sp_P55273_CDN2D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G2HH14_G2HH14_PANTR_9598 and sp_P42772_CDN2B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G2HH14_G2HH14_PANTR_9598 and tr_A0A2R9BIA4_A0A2R9BIA4_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7C930_K7C930_PANTR_9598 and sp_Q6NXT1_ANR54_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7C930_K7C930_PANTR_9598 and tr_A0A0D9R3L9_A0A0D9R3L9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_K7C930_K7C930_PANTR_9598 and tr_A0A2K5M662_A0A2K5M662_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7CDC2_F7CDC2_MONDO_13616 and tr_H0UY45_H0UY45_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F6SQE6_F6SQE6_HORSE_9796 and tr_A0A2U3XKW5_A0A2U3XKW5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_W5P2T1_W5P2T1_SHEEP_9940 and tr_F1S6F7_F1S6F7_PIG_9823 are exactly identical! WARNING: Sequences tr_W5P2T1_W5P2T1_SHEEP_9940 and tr_A7MBB9_A7MBB9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P2T1_W5P2T1_SHEEP_9940 and tr_A0A2U4BJQ9_A0A2U4BJQ9_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5P2T1_W5P2T1_SHEEP_9940 and tr_A0A2Y9NPW7_A0A2Y9NPW7_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P2T1_W5P2T1_SHEEP_9940 and tr_A0A383YP29_A0A383YP29_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PT71_W5PT71_SHEEP_9940 and tr_F1MSK0_F1MSK0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A0G2KBB9_A0A0G2KBB9_RAT_10116 and tr_A0A3Q0DBM0_A0A3Q0DBM0_MESAU_10036 are exactly identical! WARNING: Sequences tr_D3ZRP5_D3ZRP5_RAT_10116 and tr_A0A3Q0CIT2_A0A3Q0CIT2_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5PVF1_A0A3B5PVF1_XIPMA_8083 and tr_A0A087YE42_A0A087YE42_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A096LQB1_A0A096LQB1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJE2_M3ZJE2_XIPMA_8083 and tr_A0A2I4AQT7_A0A2I4AQT7_9TELE_52670 are exactly identical! WARNING: Sequences tr_M3ZS40_M3ZS40_XIPMA_8083 and tr_A0A087Y326_A0A087Y326_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A1D5Q2F7_A0A1D5Q2F7_MACMU_9544 and tr_A0A2K5ZIY5_A0A2K5ZIY5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5R579_A0A1D5R579_MACMU_9544 and tr_G7P0J8_G7P0J8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5R579_A0A1D5R579_MACMU_9544 and tr_A0A0D9RD22_A0A0D9RD22_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5R579_A0A1D5R579_MACMU_9544 and tr_A0A2K6DM88_A0A2K6DM88_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5R579_A0A1D5R579_MACMU_9544 and tr_A0A2K5Y9P3_A0A2K5Y9P3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6RQN6_F6RQN6_MACMU_9544 and tr_A0A2K5KNH1_A0A2K5KNH1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6RQR7_F6RQR7_MACMU_9544 and tr_G7PS86_G7PS86_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6RQR7_F6RQR7_MACMU_9544 and tr_A0A2K6DK91_A0A2K6DK91_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HID8_F7HID8_MACMU_9544 and tr_A0A0A0MWC2_A0A0A0MWC2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HID8_F7HID8_MACMU_9544 and tr_A0A0D9R418_A0A0D9R418_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HID8_F7HID8_MACMU_9544 and tr_A0A2K5LEN8_A0A2K5LEN8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HID8_F7HID8_MACMU_9544 and tr_A0A2K6C5T1_A0A2K6C5T1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G5C4G1_G5C4G1_HETGA_10181 and tr_A0A091DDM3_A0A091DDM3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3PH98_G3PH98_GASAC_69293 and tr_A0A2U9BQR2_A0A2U9BQR2_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H0YUA6_H0YUA6_TAEGU_59729 and tr_A0A218UPI7_A0A218UPI7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A287AUI5_A0A287AUI5_PIG_9823 and tr_A0A2Y9SGR1_A0A2Y9SGR1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A287AUI5_A0A287AUI5_PIG_9823 and tr_A0A384AUQ4_A0A384AUQ4_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1LCZ2_G1LCZ2_AILME_9646 and tr_A0A384DB74_A0A384DB74_URSMA_29073 are exactly identical! WARNING: Sequences tr_U3JW79_U3JW79_FICAL_59894 and tr_A0A218UMV1_A0A218UMV1_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IU51_U3IU51_ANAPL_8839 and tr_A0A091WNE0_A0A091WNE0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3J6Z0_U3J6Z0_ANAPL_8839 and tr_A0A1V4JRB5_A0A1V4JRB5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A087XJI1_A0A087XJI1_POEFO_48698 and tr_A0A096M7Q2_A0A096M7Q2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A094E3T2_A0A094E3T2_9PEZI_1420912 and tr_A0A2P2SWM4_A0A2P2SWM4_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0A1PGA0_A0A0A1PGA0_9FUNG_58291 and tr_A0A367K1J0_A0A367K1J0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1PGA0_A0A0A1PGA0_9FUNG_58291 and tr_A0A367KCF0_A0A367KCF0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091VYA3_A0A091VYA3_NIPNI_128390 and tr_A0A087RIP5_A0A087RIP5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1S3YNV5_A0A1S3YNV5_TOBAC_4097 and tr_A0A314KQE7_A0A314KQE7_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4APP5_A0A1S4APP5_TOBAC_4097 and tr_A0A1U7VUI0_A0A1U7VUI0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3NP36_A0A1S3NP36_SALSA_8030 and tr_A0A1S3PFD9_A0A1S3PFD9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NP36_A0A1S3NP36_SALSA_8030 and tr_A0A060Y0L2_A0A060Y0L2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MVG0_A0A226MVG0_CALSU_9009 and tr_A0A226PFV3_A0A226PFV3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG1_A0A2D0RLG1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG3_A0A2D0RLG3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG7_A0A2D0RLG7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RMH7_A0A2D0RMH7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RN24_A0A2D0RN24_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SA59_A0A2D0SA59_ICTPU_7998 and tr_W6A3A3_W6A3A3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2YDC8_A0A2G2YDC8_CAPAN_4072 and tr_A0A2G3B7H5_A0A2G3B7H5_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2N5T2I3_A0A2N5T2I3_9BASI_200324 and tr_A0A2N5VCP7_A0A2N5VCP7_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2U3V5J2_A0A2U3V5J2_TURTR_9739 and tr_A0A2Y9LJR1_A0A2Y9LJR1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AR11_A0A2U4AR11_TURTR_9739 and tr_A0A2Y9Q3F6_A0A2Y9Q3F6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WP12_A0A2U3WP12_ODORO_9708 and tr_A0A2U3YBB5_A0A2U3YBB5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9T4V9_A0A2Y9T4V9_PHYCD_9755 and tr_A0A383ZL83_A0A383ZL83_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 230 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.reduced.phy Alignment comprises 1 partitions and 156 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 156 Gaps: 15.35 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/3_mltree/P42771.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 39 / 3120 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -72041.109372 [00:00:00 -72041.109372] Initial branch length optimization [00:00:00 -69759.062365] Model parameter optimization (eps = 0.100000) [00:00:20] Tree #1, final logLikelihood: -69639.072121 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.070597,0.228282) (0.147540,0.312326) (0.352066,0.752785) (0.429797,1.565329) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/P42771/4_raxmlng_ancestral/P42771.raxml.log Analysis started: 19-Jun-2021 19:57:47 / finished: 19-Jun-2021 19:58:09 Elapsed time: 22.091 seconds