RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:11:41 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/2_msa/P41227_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/3_mltree/P41227.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102701 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/2_msa/P41227_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 235 sites WARNING: Sequences tr_B4QNS1_B4QNS1_DROSI_7240 and tr_Q9VT75_Q9VT75_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QNS1_B4QNS1_DROSI_7240 and tr_B4HLS4_B4HLS4_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2A6K1_E2A6K1_CAMFO_104421 and tr_A0A151XBD9_A0A151XBD9_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2A6K1_E2A6K1_CAMFO_104421 and tr_A0A195BXK3_A0A195BXK3_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2A6K1_E2A6K1_CAMFO_104421 and tr_A0A195ETS8_A0A195ETS8_9HYME_34720 are exactly identical! WARNING: Sequences tr_Q9CQX6_Q9CQX6_MOUSE_10090 and tr_M0R635_M0R635_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YC59_M3YC59_MUSPF_9669 and tr_G1MJH5_G1MJH5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YC59_M3YC59_MUSPF_9669 and tr_A0A2U3Y6T2_A0A2U3Y6T2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J3K9M8_J3K9M8_COCIM_246410 and tr_A0A0J7B372_A0A0J7B372_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q6W8_B6Q6W8_TALMQ_441960 and tr_A0A093VW99_A0A093VW99_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B2W359_B2W359_PYRTR_426418 and tr_A0A2W1FAP3_A0A2W1FAP3_9PLEO_45151 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_H2PX70_H2PX70_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_H2QZA0_H2QZA0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and sp_P41227_NAA10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_F7GKG6_F7GKG6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_A0A0D9R3B9_A0A0D9R3B9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_A0A2K5N0X9_A0A2K5N0X9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R2U7_G3R2U7_GORGO_9595 and tr_A0A2K6CBB4_A0A2K6CBB4_MACNE_9545 are exactly identical! WARNING: Sequences tr_B8N7D0_B8N7D0_ASPFN_332952 and tr_Q2UBQ5_Q2UBQ5_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N7D0_B8N7D0_ASPFN_332952 and tr_A0A1S9DRF9_A0A1S9DRF9_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8N7D0_B8N7D0_ASPFN_332952 and tr_A0A2G7G789_A0A2G7G789_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A179UFM4_A0A179UFM4_BLAGS_559298 and tr_C5GFK6_C5GFK6_AJEDR_559297 are exactly identical! WARNING: Sequences tr_Q5KG23_Q5KG23_CRYNJ_214684 and tr_E6R699_E6R699_CRYGW_367775 are exactly identical! WARNING: Sequences tr_F9FJU3_F9FJU3_FUSOF_660025 and tr_X0BET4_X0BET4_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FJU3_F9FJU3_FUSOF_660025 and tr_A0A2H3SX52_A0A2H3SX52_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FJU3_F9FJU3_FUSOF_660025 and tr_A0A2K0WEG4_A0A2K0WEG4_GIBNY_42673 are exactly identical! WARNING: Sequences tr_C6H2F1_C6H2F1_AJECH_544712 and tr_F0U552_F0U552_AJEC8_544711 are exactly identical! WARNING: Sequences tr_J4UHB4_J4UHB4_BEAB2_655819 and tr_A0A2N6NHB6_A0A2N6NHB6_BEABA_176275 are exactly identical! WARNING: Sequences tr_M4AQT0_M4AQT0_XIPMA_8083 and tr_A0A087XZ31_A0A087XZ31_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZTM2_A0A087ZTM2_APIME_7460 and tr_A0A2A3E247_A0A2A3E247_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0E0GKK8_A0A0E0GKK8_ORYNI_4536 and tr_A2XY01_A2XY01_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GKK8_A0A0E0GKK8_ORYNI_4536 and tr_I1PPN9_I1PPN9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GKK8_A0A0E0GKK8_ORYNI_4536 and tr_A0A0D3G035_A0A0D3G035_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GKK8_A0A0E0GKK8_ORYNI_4536 and tr_A0A0D9ZRB8_A0A0D9ZRB8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0K0JGL6_A0A0K0JGL6_BRUMA_6279 and tr_A0A0N4TLW3_A0A0N4TLW3_BRUPA_6280 are exactly identical! WARNING: Sequences tr_F6U9M9_F6U9M9_MACMU_9544 and tr_G7P533_G7P533_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6U9M9_F6U9M9_MACMU_9544 and tr_A0A2K6CYG4_A0A2K6CYG4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0E0PEK9_A0A0E0PEK9_ORYRU_4529 and tr_Q7XQS0_Q7XQS0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F9XP90_F9XP90_ZYMTI_336722 and tr_A0A0F4GEZ5_A0A0F4GEZ5_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9XP90_F9XP90_ZYMTI_336722 and tr_A0A1X7S9Q2_A0A1X7S9Q2_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_G2YDI8_G2YDI8_BOTF4_999810 and tr_M7U8N9_M7U8N9_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_A8WRB3_A8WRB3_CAEBR_6238 and tr_A0A2G5U7W2_A0A2G5U7W2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F2SLI8_F2SLI8_TRIRC_559305 and tr_A0A178ER43_A0A178ER43_TRIRU_5551 are exactly identical! WARNING: Sequences tr_G3YFR1_G3YFR1_ASPNA_380704 and tr_A0A319BG88_A0A319BG88_9EURO_1450533 are exactly identical! WARNING: Sequences tr_S2KEN6_S2KEN6_MUCC1_1220926 and tr_A0A0C9MTC5_A0A0C9MTC5_9FUNG_91626 are exactly identical! WARNING: Sequences tr_U5H9G6_U5H9G6_USTV1_683840 and tr_A0A2X0MCS0_A0A2X0MCS0_9BASI_796604 are exactly identical! WARNING: Sequences tr_U5H9G6_U5H9G6_USTV1_683840 and tr_A0A2X0MEV0_A0A2X0MEV0_9BASI_289078 are exactly identical! WARNING: Sequences tr_V2XKS4_V2XKS4_MONRO_1381753 and tr_A0A0W0F8H5_A0A0W0F8H5_9AGAR_221103 are exactly identical! WARNING: Sequences tr_V2YRY0_V2YRY0_MONRO_1381753 and tr_A0A0W0EZ99_A0A0W0EZ99_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2PZU5_W2PZU5_PHYPN_761204 and tr_W2N3H9_W2N3H9_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015JND7_A0A015JND7_9GLOM_1432141 and tr_U9UVY0_U9UVY0_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067GUL8_A0A067GUL8_CITSI_2711 and tr_V4TQP3_V4TQP3_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A084QBT0_A0A084QBT0_STAC4_1283841 and tr_A0A084REY8_A0A084REY8_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A094DUG6_A0A094DUG6_9PEZI_1420912 and tr_A0A1B8GGD7_A0A1B8GGD7_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A067CF96_A0A067CF96_SAPPC_695850 and tr_T0SIQ0_T0SIQ0_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0B4HHM7_A0A0B4HHM7_METMF_1276143 and tr_A0A0D9NQY5_A0A0D9NQY5_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A0D2SDR1_A0A0D2SDR1_GOSRA_29730 and tr_A0A1U8L721_A0A1U8L721_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8UNH1_A0A0F8UNH1_9EURO_308745 and tr_A0A2T5M1P6_A0A2T5M1P6_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0L1J8U5_A0A0L1J8U5_ASPNO_1509407 and tr_A0A1F7ZYK5_A0A1F7ZYK5_9EURO_109264 are exactly identical! WARNING: Sequences tr_A0A0S7E5B7_A0A0S7E5B7_9EURO_293939 and tr_A0A229WNY8_A0A229WNY8_9EURO_1245748 are exactly identical! WARNING: Sequences tr_A0A0V0UUK6_A0A0V0UUK6_9BILA_181606 and tr_A0A0V1L0N3_A0A0V1L0N3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0UUK6_A0A0V0UUK6_9BILA_181606 and tr_A0A0V1A032_A0A0V1A032_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0UUK6_A0A0V0UUK6_9BILA_181606 and tr_A0A0V1PCV5_A0A0V1PCV5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0UUK6_A0A0V0UUK6_9BILA_181606 and tr_A0A0V0TS31_A0A0V0TS31_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1N5R9_A0A0V1N5R9_9BILA_268474 and tr_A0A0V1HIV7_A0A0V1HIV7_9BILA_268475 are exactly identical! WARNING: Sequences tr_I1S0R2_I1S0R2_GIBZE_229533 and tr_A0A2T4GHJ4_A0A2T4GHJ4_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A146FWP6_A0A146FWP6_9EURO_1069201 and tr_A0A317V5C9_A0A317V5C9_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A0A164XXS1_A0A164XXS1_9HOMO_1314777 and tr_A0A166FKA3_A0A166FKA3_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S4BP62_A0A1S4BP62_TOBAC_4097 and tr_A0A1J6KME2_A0A1J6KME2_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4BP62_A0A1S4BP62_TOBAC_4097 and tr_A0A1U7VJK2_A0A1U7VJK2_NICSY_4096 are exactly identical! WARNING: Sequences tr_B9ELK7_B9ELK7_SALSA_8030 and tr_W5S0D8_W5S0D8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B7NHW2_A0A1B7NHW2_9HOMO_1314800 and tr_A0A1J8PND6_A0A1J8PND6_9HOMO_180088 are exactly identical! WARNING: Sequences tr_A0A1V6NEB5_A0A1V6NEB5_9EURO_60169 and tr_A0A1V6QZL2_A0A1V6QZL2_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A2H3DP22_A0A2H3DP22_ARMGA_47427 and tr_A0A2H3C6V0_A0A2H3C6V0_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2H3C0L7_A0A2H3C0L7_9AGAR_1076256 and tr_A0A284QZ95_A0A284QZ95_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2K5M8Q9_A0A2K5M8Q9_CERAT_9531 and tr_A0A2K5ZCS0_A0A2K5ZCS0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2P5EH12_A0A2P5EH12_TREOI_63057 and tr_A0A2P5DLY8_A0A2P5DLY8_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2Y9MKS5_A0A2Y9MKS5_DELLE_9749 and tr_A0A2Y9S1J1_A0A2Y9S1J1_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 78 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.reduced.phy Alignment comprises 1 partitions and 235 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 235 Gaps: 23.64 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/3_mltree/P41227.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 59 / 4720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -72441.813113 [00:00:00 -72441.813113] Initial branch length optimization [00:00:00 -72065.170637] Model parameter optimization (eps = 0.100000) [00:00:26] Tree #1, final logLikelihood: -71746.271527 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.242681,0.164509) (0.174481,0.257848) (0.220942,0.615875) (0.361896,2.152593) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P41227/4_raxmlng_ancestral/P41227.raxml.log Analysis started: 12-Jul-2021 18:11:41 / finished: 12-Jul-2021 18:12:09 Elapsed time: 28.622 seconds Consumed energy: 2.439 Wh