RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:20:34 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/2_msa/P40424_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626099634 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/2_msa/P40424_nogap_msa.fasta [00:00:00] Loaded alignment with 961 taxa and 430 sites WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and sp_O46339_HTH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4HIS7_B4HIS7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B3LVY3_B3LVY3_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and sp_P40427_EXD_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4IMG8_B4IMG8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A1W4VFS7_A0A1W4VFS7_DROFC_30025 are exactly identical! WARNING: Sequences tr_E2AEN3_E2AEN3_CAMFO_104421 and tr_F4X2I7_F4X2I7_ACREC_103372 are exactly identical! WARNING: Sequences sp_O35317_PBX3_MOUSE_10090 and tr_D4AB31_D4AB31_RAT_10116 are exactly identical! WARNING: Sequences sp_O35317_PBX3_MOUSE_10090 and tr_A0A3Q0D996_A0A3Q0D996_MESAU_10036 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_G3R6Q4_G3R6Q4_GORGO_9595 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_H2N4Y1_H2N4Y1_PONAB_9601 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2I3R9S9_A0A2I3R9S9_PANTR_9598 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_H0WFT4_H0WFT4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_H0V6Q2_H0V6Q2_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and sp_P40424_PBX1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A1D5QQA0_A0A1D5QQA0_MACMU_9544 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_G3TFS0_G3TFS0_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_U3CS37_U3CS37_CALJA_9483 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_F1MJ02_F1MJ02_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A1S3FN32_A0A1S3FN32_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A1U8BUL5_A0A1U8BUL5_MESAU_10036 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2K5LN45_A0A2K5LN45_CERAT_9531 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2K6CQK5_A0A2K6CQK5_MACNE_9545 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2K5YIE6_A0A2K5YIE6_MANLE_9568 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2U3UZR8_A0A2U3UZR8_TURTR_9739 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2U4B2N6_A0A2U4B2N6_TURTR_9739 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2Y9RUZ7_A0A2Y9RUZ7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2Y9MIV8_A0A2Y9MIV8_DELLE_9749 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A2Y9EH90_A0A2Y9EH90_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P41778_PBX1_MOUSE_10090 and tr_A0A384AUQ7_A0A384AUQ7_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XXE3_M3XXE3_MUSPF_9669 and tr_F1PDM8_F1PDM8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XXE3_M3XXE3_MUSPF_9669 and tr_A0A2U3W5U6_A0A2U3W5U6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXE3_M3XXE3_MUSPF_9669 and tr_A0A2Y9JV61_A0A2Y9JV61_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B4JX43_B4JX43_DROGR_7222 and tr_B4MA61_B4MA61_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JX43_B4JX43_DROGR_7222 and tr_A0A0M4ESN1_A0A0M4ESN1_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A2I3HTV9_A0A2I3HTV9_NOMLE_61853 and tr_A0A2K6A1H6_A0A2K6A1H6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HTV9_A0A2I3HTV9_NOMLE_61853 and tr_A0A2R9AEX6_A0A2R9AEX6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HKA1_G3HKA1_CRIGR_10029 and tr_A0A1U7TSN6_A0A1U7TSN6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3HKA1_G3HKA1_CRIGR_10029 and tr_A0A2U4B2N8_A0A2U4B2N8_TURTR_9739 are exactly identical! WARNING: Sequences tr_B6QI96_B6QI96_TALMQ_441960 and tr_A0A093V4F7_A0A093V4F7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G1T307_G1T307_RABIT_9986 and tr_E2RAY1_E2RAY1_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1T307_G1T307_RABIT_9986 and tr_F6W7A8_F6W7A8_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1T307_G1T307_RABIT_9986 and tr_H0Y2G4_H0Y2G4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1T307_G1T307_RABIT_9986 and tr_A0A1S3FKY0_A0A1S3FKY0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A179UTN7_A0A179UTN7_BLAGS_559298 and tr_C5GNZ4_C5GNZ4_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A286XSY0_A0A286XSY0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and sp_P40426_PBX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_G3THT8_G3THT8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_G3W623_G3W623_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_F6Z197_F6Z197_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_F1RS30_F1RS30_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2I2UE21_A0A2I2UE21_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A1S3ATA2_A0A1S3ATA2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2K5P601_A0A2K5P601_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2K6CZI1_A0A2K6CZI1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2U4CH73_A0A2U4CH73_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2U3VDG7_A0A2U3VDG7_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2Y9J730_A0A2Y9J730_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 and tr_A0A2Y9NNK0_A0A2Y9NNK0_DELLE_9749 are exactly identical! WARNING: Sequences tr_H2QSR2_H2QSR2_PANTR_9598 and sp_P40425_PBX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_D3ZJI6_D3ZJI6_RAT_10116 and tr_G3WHN8_G3WHN8_SARHA_9305 are exactly identical! WARNING: Sequences tr_D3ZJI6_D3ZJI6_RAT_10116 and tr_H1A3Y0_H1A3Y0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_C6HQZ8_C6HQZ8_AJECH_544712 and tr_F0ULS9_F0ULS9_AJEC8_544711 are exactly identical! WARNING: Sequences tr_A0A3B5QA75_A0A3B5QA75_XIPMA_8083 and tr_A0A096LPS1_A0A096LPS1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QTE9_A0A3B5QTE9_XIPMA_8083 and tr_A0A087YHE3_A0A087YHE3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QWH1_A0A3B5QWH1_XIPMA_8083 and tr_A0A096M9H6_A0A096M9H6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0N4TS79_A0A0N4TS79_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0R3R211_A0A0R3R211_9BILA_42155 are exactly identical! WARNING: Sequences tr_A2QJG0_A2QJG0_ASPNC_425011 and tr_A0A319AWR2_A0A319AWR2_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F6RF65_F6RF65_MACMU_9544 and tr_A0A2I3LEQ2_A0A2I3LEQ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6RF77_F6RF77_MACMU_9544 and tr_A0A096NHC3_A0A096NHC3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6RF77_F6RF77_MACMU_9544 and tr_A0A2K5L812_A0A2K5L812_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6RF77_F6RF77_MACMU_9544 and tr_A0A2K6CT62_A0A2K6CT62_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A100IBH0_A0A100IBH0_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A1L9MVC1_A0A1L9MVC1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A317VC38_A0A317VC38_9EURO_1448314 are exactly identical! WARNING: Sequences tr_H3BEB3_H3BEB3_LATCH_7897 and tr_F1MSP2_F1MSP2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A0Q9WPM1_A0A0Q9WPM1_DROVI_7244 and tr_B4K5K2_B4K5K2_DROMO_7230 are exactly identical! WARNING: Sequences tr_U3JZS0_U3JZS0_FICAL_59894 and tr_A0A218V5K7_A0A218V5K7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A158N8Q3_A0A158N8Q3_ONCVO_6282 and tr_A0A182EQ85_A0A182EQ85_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067EZP8_A0A067EZP8_CITSI_2711 and tr_V4URG5_V4URG5_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A074X421_A0A074X421_9PEZI_1043004 and tr_A0A074WSQ9_A0A074WSQ9_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A091CQ96_A0A091CQ96_FUKDA_885580 and tr_A0A0D9RMH5_A0A0D9RMH5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0D2TH16_A0A0D2TH16_GOSRA_29730 and tr_A0A1U8JN57_A0A1U8JN57_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091IUU0_A0A091IUU0_EGRGA_188379 and tr_A0A087R852_A0A087R852_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IWY0_A0A091IWY0_EGRGA_188379 and tr_A0A0A0AK28_A0A0A0AK28_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JN19_A0A091JN19_EGRGA_188379 and tr_A0A093PW87_A0A093PW87_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0L9UAU4_A0A0L9UAU4_PHAAN_3914 and tr_A0A1S3U4G1_A0A1S3U4G1_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V1DFU2_A0A0V1DFU2_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V0X5V8_A0A0V0X5V8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V0VZP4_A0A0V0VZP4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V1LC80_A0A0V1LC80_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V0ZRF2_A0A0V0ZRF2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V1NVL0_A0A0V1NVL0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 and tr_A0A0V0TKE7_A0A0V0TKE7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A101MM27_A0A101MM27_9EURO_48697 and tr_A0A1V6NLT7_A0A1V6NLT7_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A1S3MBU2_A0A1S3MBU2_SALSA_8030 and tr_A0A060WFP9_A0A060WFP9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0PUN1_A0A2D0PUN1_ICTPU_7998 and tr_A0A2D0PW26_A0A2D0PW26_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G4TAG9_A0A2G4TAG9_9FUNG_1340429 and tr_A0A367K9N2_A0A367K9N2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3UZQ9_A0A2U3UZQ9_TURTR_9739 and tr_A0A2U4B2Q1_A0A2U4B2Q1_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2U3X051_A0A2U3X051_ODORO_9708 and tr_A0A2U3XXW6_A0A2U3XXW6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3X051_A0A2U3X051_ODORO_9708 and tr_A0A2Y9ECZ4_A0A2Y9ECZ4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2U3X051_A0A2U3X051_ODORO_9708 and tr_A0A384B3S9_A0A384B3S9_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 103 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.reduced.phy Alignment comprises 1 partitions and 430 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 430 Gaps: 33.99 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 108 / 8640 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -246912.947464 [00:00:00 -246912.947464] Initial branch length optimization [00:00:01 -140261.642315] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -139646.611037 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.179237,0.439138) (0.135686,0.658468) (0.332740,0.661065) (0.352337,1.736925) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/4_raxmlng_ancestral/P40424.raxml.log Analysis started: 12-Jul-2021 17:20:34 / finished: 12-Jul-2021 17:21:21 Elapsed time: 46.481 seconds Consumed energy: 3.791 Wh