RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 06-Jul-2021 03:55:38 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/2_msa/P40424_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/2_msa/P40424_trimmed_msa.fasta [00:00:00] Loaded alignment with 961 taxa and 56 sites WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and sp_P48000_KNAT3_ARATH_3702 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2K1WUN8_A0A2K1WUN8_POPTR_3694 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2K2A8G8_A0A2K2A8G8_POPTR_3694 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_D7M3V6_D7M3V6_ARALL_81972 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_I1JU99_I1JU99_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_I1MWX1_I1MWX1_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_R0HAQ0_R0HAQ0_9BRAS_81985 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_R0HAZ4_R0HAZ4_9BRAS_81985 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_V4MKY2_V4MKY2_EUTSA_72664 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A0D3AXQ7_A0A0D3AXQ7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A161XAU7_A0A161XAU7_DAUCA_79200 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A1S4CVS9_A0A1S4CVS9_TOBAC_4097 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A1S3U697_A0A1S3U697_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A1J6IDZ7_A0A1J6IDZ7_NICAT_49451 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A1R3GU48_A0A1R3GU48_COCAP_210143 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2I4ES89_A0A2I4ES89_JUGRE_51240 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2I4GIR7_A0A2I4GIR7_JUGRE_51240 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2P5F1C8_A0A2P5F1C8_TREOI_63057 are exactly identical! WARNING: Sequences tr_V7ATS5_V7ATS5_PHAVU_3885 and tr_A0A2P6PXM6_A0A2P6PXM6_ROSCH_74649 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A0R0GC11_A0A0R0GC11_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_I1L2B3_I1L2B3_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A0L9UAU4_A0A0L9UAU4_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A1S3U4G1_A0A1S3U4G1_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A1R3G2G0_A0A1R3G2G0_COCAP_210143 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A1U8ADV5_A0A1U8ADV5_NELNU_4432 are exactly identical! WARNING: Sequences tr_V7B0N4_V7B0N4_PHAVU_3885 and tr_A0A2R6QHS3_A0A2R6QHS3_ACTCH_1590841 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_E9GWR8_E9GWR8_DAPPU_6669 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and sp_O46339_HTH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4JIJ5_B4JIJ5_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4HIS7_B4HIS7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_I5ANA3_I5ANA3_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_K7J253_K7J253_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A088AB67_A0A088AB67_APIME_7460 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A158NCR4_A0A158NCR4_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_Q7QK70_Q7QK70_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_D6WTI5_D6WTI5_TRICA_7070 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A0Q9WUH6_A0A0Q9WUH6_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B3LVY3_B3LVY3_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_J9K747_J9K747_ACYPI_7029 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4G681_B4G681_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A0Q9WPM1_A0A0Q9WPM1_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4K5K2_B4K5K2_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_T1H986_T1H986_RHOPR_13249 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A084VRF8_A0A084VRF8_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A0L0C0P1_A0A0L0C0P1_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A165AHX8_A0A165AHX8_9CRUS_35525 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A0M4EKF7_A0A0M4EKF7_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_A0A1W4U7A3_A0A1W4U7A3_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_E9I0B7_E9I0B7_DAPPU_6669 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_E2AEN3_E2AEN3_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_W5JRT7_W5JRT7_ANODA_43151 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and sp_P40427_EXD_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4JX43_B4JX43_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4IMG8_B4IMG8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and sp_Q29CT2_EXD_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B0WN28_B0WN28_CULQU_7176 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_K7IRC5_K7IRC5_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A088AK26_A0A088AK26_APIME_7460 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A158NV84_A0A158NV84_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and sp_Q7PMT1_EXD_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A212F8S4_A0A212F8S4_DANPL_278856 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_D6X3W6_D6X3W6_TRICA_7070 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_F4X2I7_F4X2I7_ACREC_103372 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4MT87_B4MT87_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B3MPX5_B3MPX5_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_E2C583_E2C583_HARSA_610380 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4HCU0_B4HCU0_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4MA61_B4MA61_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4MAH8_B4MAH8_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_Q16KU0_Q16KU0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_E0VHM4_E0VHM4_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_B4L6Y9_B4L6Y9_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A067QLA2_A0A067QLA2_ZOONE_136037 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_N6TV45_N6TV45_DENPD_77166 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A084W198_A0A084W198_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0L0BU05_A0A0L0BU05_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A026X1D6_A0A026X1D6_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0N0U7A5_A0A0N0U7A5_9HYME_166423 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0N1PHL6_A0A0N1PHL6_PAPMA_76193 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A194PPZ0_A0A194PPZ0_PAPXU_66420 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0L7R570_A0A0L7R570_9HYME_597456 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A151WFX3_A0A151WFX3_9HYME_64791 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A154P8H5_A0A154P8H5_9HYME_178035 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0P5I7T6_A0A0P5I7T6_9CRUS_35525 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A151J104_A0A151J104_9HYME_471704 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A195BTA3_A0A195BTA3_9HYME_520822 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A195FXZ7_A0A195FXZ7_9HYME_34720 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A0M4ESN1_A0A0M4ESN1_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A1D2N088_A0A1D2N088_ORCCI_48709 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A1J1IXL4_A0A1J1IXL4_9DIPT_568069 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A1W4VFS7_A0A1W4VFS7_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A1W4WWC7_A0A1W4WWC7_AGRPL_224129 are exactly identical! WARNING: Sequences tr_B4R5K9_B4R5K9_DROSI_7240 and tr_A0A2J7PC71_A0A2J7PC71_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A3B3I8T8_A0A3B3I8T8_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_G1NI55_G1NI55_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_I3IZL7_I3IZL7_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_K1QSB6_K1QSB6_CRAGI_29159 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_G3NQ36_G3NQ36_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A3B1JZH4_A0A3B1JZH4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_W5KQ52_W5KQ52_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_W5NGI2_W5NGI2_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A091IWY0_A0A091IWY0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A091WFP3_A0A091WFP3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A091X0B2_A0A091X0B2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A0A0AHC1_A0A0A0AHC1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A0A0AK28_A0A0A0AK28_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A093GXS6_A0A093GXS6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3W9S3_A0A1S3W9S3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3H7N4_A0A1S3H7N4_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3MBU2_A0A1S3MBU2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3R9X5_A0A1S3R9X5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3SAQ0_A0A1S3SAQ0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3SQ22_A0A1S3SQ22_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1S3T6B1_A0A1S3T6B1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A1L8EZS3_A0A1L8EZS3_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A060WFP9_A0A060WFP9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2D0PX81_A0A2D0PX81_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2D0QPW2_A0A2D0QPW2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A210QXA1_A0A210QXA1_MIZYE_6573 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2U4BCC4_A0A2U4BCC4_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2U4BZ52_A0A2U4BZ52_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2U9BL21_A0A2U9BL21_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2R8QIZ3_A0A2R8QIZ3_DANRE_7955 and tr_A0A2Y9JKE3_A0A2Y9JKE3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F1P3W1_F1P3W1_CHICK_9031 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and sp_O35317_PBX3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_M3YR14_M3YR14_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A3B3HR19_A0A3B3HR19_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I3HTV9_A0A2I3HTV9_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G1PBN4_G1PBN4_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G3I2E1_G3I2E1_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G3R0X6_G3R0X6_GORGO_9595 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H2PTE8_H2PTE8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G1T307_G1T307_RABIT_9986 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_E2RAY1_E2RAY1_CANLF_9615 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I3RS88_A0A2I3RS88_PANTR_9598 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F6TCE3_F6TCE3_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F6W7A8_F6W7A8_MONDO_13616 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_W5PSY2_W5PSY2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_D4AB31_D4AB31_RAT_10116 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A3B5QTE9_A0A3B5QTE9_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_I3JXW6_I3JXW6_ORENI_8128 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A287D513_A0A287D513_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H0Y2G4_H0Y2G4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H2TBE3_H2TBE3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A286XSY0_A0A286XSY0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and sp_P40426_PBX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F6RF65_F6RF65_MACMU_9544 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G5B6V4_G5B6V4_HETGA_10181 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_K7G9R2_K7G9R2_PELSI_13735 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H3CFE8_H3CFE8_TETNG_99883 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G3PE55_G3PE55_GASAC_69293 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G3THT8_G3THT8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G3W623_G3W623_SARHA_9305 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H0ZAJ7_H0ZAJ7_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F7EHX3_F7EHX3_XENTR_8364 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F6Z197_F6Z197_CALJA_9483 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F1RS30_F1RS30_PIG_9823 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_H3BEB3_H3BEB3_LATCH_7897 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G1MDY6_G1MDY6_AILME_9646 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_G8F3R1_G8F3R1_MACFA_9541 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_F1MSP2_F1MSP2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_L5K9L0_L5K9L0_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I2UE21_A0A2I2UE21_FELCA_9685 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_U3JHP5_U3JHP5_FICAL_59894 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_U3I4P1_U3I4P1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A3B1KE02_A0A3B1KE02_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_W5LZC3_W5LZC3_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A087YHE3_A0A087YHE3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I3LEQ2_A0A2I3LEQ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A091CQ96_A0A091CQ96_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A0D9RMH5_A0A0D9RMH5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A0N8JXM9_A0A0N8JXM9_9TELE_113540 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A0P7VPT5_A0A0P7VPT5_9TELE_113540 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A151MZT5_A0A151MZT5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A0Q3TJK0_A0A0Q3TJK0_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A091IN80_A0A091IN80_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A091UQU4_A0A091UQU4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A093HT86_A0A093HT86_STRCA_441894 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A099ZA60_A0A099ZA60_TINGU_94827 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A091GJL0_A0A091GJL0_9AVES_55661 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I0M401_A0A2I0M401_COLLI_8932 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1S3ATA2_A0A1S3ATA2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1S3FKY0_A0A1S3FKY0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1S3MBU3_A0A1S3MBU3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1S3NJX2_A0A1S3NJX2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1S3PI70_A0A1S3PI70_SALSA_8030 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1L8F6G6_A0A1L8F6G6_XENLA_8355 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A3Q0E1T9_A0A3Q0E1T9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1U7R467_A0A1U7R467_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A3Q0D996_A0A3Q0D996_MESAU_10036 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A1V4J637_A0A1V4J637_PATFA_372326 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2I4B4E8_A0A2I4B4E8_9TELE_52670 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A218V5J1_A0A218V5J1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A226NI24_A0A226NI24_CALSU_9009 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A226P2L2_A0A226P2L2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2D0R0M1_A0A2D0R0M1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2D0R0M6_A0A2D0R0M6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2D0R2C7_A0A2D0R2C7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2K5P601_A0A2K5P601_CERAT_9531 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2K6CZI1_A0A2K6CZI1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2K6A1H6_A0A2K6A1H6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2R9AEX6_A0A2R9AEX6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2U4CH73_A0A2U4CH73_TURTR_9739 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2U3VDG7_A0A2U3VDG7_ODORO_9708 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2U3YQY9_A0A2U3YQY9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2U9BRF9_A0A2U9BRF9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2Y9DJA3_A0A2Y9DJA3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2Y9J730_A0A2Y9J730_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2Y9NNK0_A0A2Y9NNK0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A2Y9T050_A0A2Y9T050_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A4UU10_A4UU10_DANRE_7955 and tr_A0A384CQ85_A0A384CQ85_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_Q9I9B7_Q9I9B7_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_G3PJE8_G3PJE8_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A3B1KD46_A0A3B1KD46_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_W5LJ61_W5LJ61_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A0P7YNF6_A0A0P7YNF6_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A1S3KJ40_A0A1S3KJ40_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A1S3PAL5_A0A1S3PAL5_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A060XZK4_A0A060XZK4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A2D0S0Z4_A0A2D0S0Z4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1QSY5_F1QSY5_DANRE_7955 and tr_A0A2D0TAJ5_A0A2D0TAJ5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_H2LX64_H2LX64_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_M3ZK21_M3ZK21_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_I3KII2_I3KII2_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_A0A087XC90_A0A087XC90_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_A0A0P7ZAL3_A0A0P7ZAL3_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q90ZE3_Q90ZE3_DANRE_7955 and tr_A0A2D0T6N9_A0A2D0T6N9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9I9B4_Q9I9B4_DANRE_7955 and tr_W5LCH0_W5LCH0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A3B3HFI9_A0A3B3HFI9_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A3B5QA75_A0A3B5QA75_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_I3J0F5_I3J0F5_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A3B5KBQ9_A0A3B5KBQ9_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_Q4RHF6_Q4RHF6_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_G3P708_G3P708_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_W5LE22_W5LE22_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A096LPS1_A0A096LPS1_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A0P7UD41_A0A0P7UD41_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A2I4CK29_A0A2I4CK29_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A2D0PUN1_A0A2D0PUN1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A2D0PW26_A0A2D0PW26_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A2D0PYR0_A0A2D0PYR0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9PW77_Q9PW77_DANRE_7955 and tr_A0A2U9CSE2_A0A2U9CSE2_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_G1NFZ5_G1NFZ5_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_R4GA03_R4GA03_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_F6WGN9_F6WGN9_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_K7FY55_K7FY55_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_G3WD13_G3WD13_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_R0LKN5_R0LKN5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A151NVT3_A0A151NVT3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A0Q3X912_A0A0Q3X912_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A091F319_A0A091F319_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A091IUU0_A0A091IUU0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A093Q4E9_A0A093Q4E9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A087R852_A0A087R852_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A093H0G7_A0A093H0G7_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A091WIY6_A0A091WIY6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A091G7U1_A0A091G7U1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A0A0A3U1_A0A0A0A3U1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A2I0LLK0_A0A2I0LLK0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A091HQH8_A0A091HQH8_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PCW7_A0A1D5PCW7_CHICK_9031 and tr_A0A1U7RT54_A0A1U7RT54_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and sp_P41778_PBX1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_M3XXE3_M3XXE3_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H2MQ75_H2MQ75_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2I3GGU4_A0A2I3GGU4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G1P861_G1P861_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G3HKA1_G3HKA1_CRIGR_10029 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G3R6Q4_G3R6Q4_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H2N4Y1_H2N4Y1_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G1MX82_G1MX82_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H9GAP0_H9GAP0_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G1STE9_G1STE9_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_F1PDM8_F1PDM8_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2I3R9S9_A0A2I3R9S9_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_F6RQZ7_F6RQZ7_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_F6ZVQ3_F6ZVQ3_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_W5PNU0_W5PNU0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_D3ZJI6_D3ZJI6_RAT_10116 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A3B5QWH1_A0A3B5QWH1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_I3JTW3_I3JTW3_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A287CYB8_A0A287CYB8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H0WFT4_H0WFT4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H0V6Q2_H0V6Q2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and sp_P40424_PBX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1D5QQA0_A0A1D5QQA0_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G5AQ27_G5AQ27_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_K7GJN3_K7GJN3_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G3TFS0_G3TFS0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G3WHN8_G3WHN8_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H1A3Y0_H1A3Y0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_U3CS37_U3CS37_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_F1S218_F1S218_PIG_9823 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_H3AX64_H3AX64_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G1LJ10_G1LJ10_AILME_9646 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_G7NU25_G7NU25_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_F1MJ02_F1MJ02_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_L5KZV4_L5KZV4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2I2UH73_A0A2I2UH73_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_U3JZS0_U3JZS0_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_U3I8L9_U3I8L9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A096M9H6_A0A096M9H6_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A096MXS5_A0A096MXS5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091DDD9_A0A091DDD9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A0D9RE61_A0A0D9RE61_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A151MIJ8_A0A151MIJ8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A0Q3T1Y3_A0A0Q3T1Y3_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091EH65_A0A091EH65_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091JN19_A0A091JN19_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A093PW87_A0A093PW87_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091UWA7_A0A091UWA7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A087QQG4_A0A087QQG4_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A093HM84_A0A093HM84_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091XN56_A0A091XN56_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A099YXA9_A0A099YXA9_TINGU_94827 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091FYY1_A0A091FYY1_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A0A0B1B3_A0A0A0B1B3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2I0MCA0_A0A2I0MCA0_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A091I4N7_A0A091I4N7_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1S3AHR4_A0A1S3AHR4_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1S3FN32_A0A1S3FN32_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1U7TSN6_A0A1U7TSN6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A3Q0FYU2_A0A3Q0FYU2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1U8BUL5_A0A1U8BUL5_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A1V4JXI5_A0A1V4JXI5_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2I4D2I0_A0A2I4D2I0_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A218V5K7_A0A218V5K7_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A226N0U6_A0A226N0U6_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A226PVW9_A0A226PVW9_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2K5LN45_A0A2K5LN45_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2K6CQK5_A0A2K6CQK5_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2K5YIE6_A0A2K5YIE6_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2R8ZJV1_A0A2R8ZJV1_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U3UZQ9_A0A2U3UZQ9_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U3UZR8_A0A2U3UZR8_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U4B2N6_A0A2U4B2N6_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U4B2N8_A0A2U4B2N8_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U4B2Q1_A0A2U4B2Q1_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U3W5U6_A0A2U3W5U6_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2U3YWJ1_A0A2U3YWJ1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2Y9RUZ7_A0A2Y9RUZ7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2Y9JV61_A0A2Y9JV61_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2Y9MIV8_A0A2Y9MIV8_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A2Y9EH90_A0A2Y9EH90_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A384BNX1_A0A384BNX1_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q9IB15_Q9IB15_CHICK_9031 and tr_A0A384AUQ7_A0A384AUQ7_BALAS_310752 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_M3YFE8_M3YFE8_MUSPF_9669 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G1R4E7_G1R4E7_NOMLE_61853 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G1NTK4_G1NTK4_MYOLU_59463 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G3HZC2_G3HZC2_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G3QIS2_G3QIS2_GORGO_9595 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_H2PIN4_H2PIN4_PONAB_9601 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G1KMK3_G1KMK3_ANOCA_28377 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G1TBM4_G1TBM4_RABIT_9986 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F1PLX7_F1PLX7_CANLF_9615 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_H2QSR2_H2QSR2_PANTR_9598 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F6YKT7_F6YKT7_MONDO_13616 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F6QRL2_F6QRL2_HORSE_9796 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_W5NPM7_W5NPM7_SHEEP_9940 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_Q6MG87_Q6MG87_RAT_10116 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_I3MNH8_I3MNH8_ICTTR_43179 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_H0XF27_H0XF27_OTOGA_30611 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_H0W9R9_H0W9R9_CAVPO_10141 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and sp_P40425_PBX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F6RF77_F6RF77_MACMU_9544 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G5C3I6_G5C3I6_HETGA_10181 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G3TJN0_G3TJN0_LOXAF_9785 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G3W9W7_G3W9W7_SARHA_9305 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and sp_B3DM47_PBX2_XENTR_8364 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F7H4W5_F7H4W5_CALJA_9483 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A286ZJI9_A0A286ZJI9_PIG_9823 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G1L6Y5_G1L6Y5_AILME_9646 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_G7P2Q9_G7P2Q9_MACFA_9541 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_F1MQ55_F1MQ55_BOVIN_9913 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_L5L6L8_L5L6L8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_M3W2C9_M3W2C9_FELCA_9685 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A096NHC3_A0A096NHC3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A091CPR5_A0A091CPR5_FUKDA_885580 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A0D9RAD2_A0A0D9RAD2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A1S3A0J0_A0A1S3A0J0_ERIEU_9365 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A1S3GP72_A0A1S3GP72_DIPOR_10020 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A1L8F3K5_A0A1L8F3K5_XENLA_8355 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A3Q0EHN4_A0A3Q0EHN4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A1U7R680_A0A1U7R680_MESAU_10036 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2K5L812_A0A2K5L812_CERAT_9531 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2K6CT62_A0A2K6CT62_MACNE_9545 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2K5Z6E8_A0A2K5Z6E8_MANLE_9568 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2R9C042_A0A2R9C042_PANPA_9597 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2U3X051_A0A2U3X051_ODORO_9708 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2U3XXW6_A0A2U3XXW6_LEPWE_9713 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2Y9ECZ4_A0A2Y9ECZ4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2Y9JYP3_A0A2Y9JYP3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2Y9MJW5_A0A2Y9MJW5_DELLE_9749 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A2Y9SH16_A0A2Y9SH16_PHYCD_9755 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A384DTG4_A0A384DTG4_URSMA_29073 are exactly identical! WARNING: Sequences sp_O35984_PBX2_MOUSE_10090 and tr_A0A384B3S9_A0A384B3S9_BALAS_310752 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_M3Y071_M3Y071_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_G1QS04_G1QS04_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_G1U420_G1U420_RABIT_9986 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2I3S5F2_A0A2I3S5F2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_F6WXP2_F6WXP2_HORSE_9796 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_W5PN90_W5PN90_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_D4A9U2_D4A9U2_RAT_10116 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_I3NCN2_I3NCN2_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_H0WJY6_H0WJY6_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_H0WAU1_H0WAU1_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and sp_A6NDR6_ME3L1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and sp_Q99687_MEIS3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A1D5QGG3_A0A1D5QGG3_MACMU_9544 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and sp_Q6DIF3_MEIS3_XENTR_8364 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_F6T789_F6T789_CALJA_9483 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_F1RLY8_F1RLY8_PIG_9823 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_H3B4V1_H3B4V1_LATCH_7897 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_F1MZE3_F1MZE3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A0A0MU56_A0A0A0MU56_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A0D9S2K0_A0A0D9S2K0_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_V4AF73_V4AF73_LOTGI_225164 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A0R3X6Y8_A0A0R3X6Y8_HYDTA_6205 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A0R3VTM7_A0A0R3VTM7_TAEAS_60517 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A151M7C9_A0A151M7C9_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A1S3GIM6_A0A1S3GIM6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A1L8F3Y6_A0A1L8F3Y6_XENLA_8355 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A1L8F904_A0A1L8F904_XENLA_8355 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A3Q0CFI2_A0A3Q0CFI2_MESAU_10036 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2K5P3A7_A0A2K5P3A7_CERAT_9531 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2K6ECI3_A0A2K6ECI3_MACNE_9545 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2U3VZB8_A0A2U3VZB8_ODORO_9708 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2U3Y714_A0A2U3Y714_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2Y9DV63_A0A2Y9DV63_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A2Y9L7Y4_A0A2Y9L7Y4_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P97368_MEIS3_MOUSE_10090 and tr_A0A384BJT1_A0A384BJT1_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_F1PQ28_F1PQ28_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_H0WWB8_H0WWB8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_I3LCL1_I3LCL1_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_A0A2U3W8Z8_A0A2U3W8Z8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_A0A2U3YLM2_A0A2U3YLM2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YV95_M3YV95_MUSPF_9669 and tr_A0A2Y9IZM0_A0A2Y9IZM0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_S7ZFG0_S7ZFG0_PENO1_933388 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A0A2KJ53_A0A0A2KJ53_PENIT_40296 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A0A2JN99_A0A0A2JN99_PENEN_27334 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_W6QMT1_W6QMT1_PENRF_1365484 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A0M8PAT7_A0A0M8PAT7_9EURO_229535 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A0F7TXY6_A0A0F7TXY6_9EURO_104259 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A0G4PNT5_A0A0G4PNT5_PENCA_1429867 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A101MM27_A0A101MM27_9EURO_48697 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A135LG37_A0A135LG37_PENPA_5078 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1F5LE78_A0A1F5LE78_9EURO_1835702 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1V6NLT7_A0A1V6NLT7_9EURO_60169 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1V6RFQ7_A0A1V6RFQ7_9EURO_29845 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1V6RBU7_A0A1V6RBU7_9EURO_60172 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1V6PVX8_A0A1V6PVX8_9EURO_416450 are exactly identical! WARNING: Sequences tr_B6HRH0_B6HRH0_PENRW_500485 and tr_A0A1V6YKP3_A0A1V6YKP3_PENNA_60175 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A3B5PVE3_A0A3B5PVE3_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_I3JPT2_I3JPT2_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A096M2Y3_A0A096M2Y3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A2I4BVQ5_A0A2I4BVQ5_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A2D0PPR7_A0A2D0PPR7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A2D0PRD2_A0A2D0PRD2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A2D0PRE3_A0A2D0PRE3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3I668_A0A3B3I668_ORYLA_8090 and tr_A0A2D0PT27_A0A2D0PT27_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_M4ABH1_M4ABH1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_I3IY70_I3IY70_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_H2U093_H2U093_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_A0A087XCL2_A0A087XCL2_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_A0A1S3L748_A0A1S3L748_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_A0A1S3PKK5_A0A1S3PKK5_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2LAT2_H2LAT2_ORYLA_8090 and tr_A0A2I4CG79_A0A2I4CG79_9TELE_52670 are exactly identical! WARNING: Sequences tr_G3H463_G3H463_CRIGR_10029 and tr_D4AA41_D4AA41_RAT_10116 are exactly identical! WARNING: Sequences tr_B6QI96_B6QI96_TALMQ_441960 and tr_A0A093V4F7_A0A093V4F7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_B6QI96_B6QI96_TALMQ_441960 and tr_A0A364L455_A0A364L455_9EURO_1196081 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A1D5R3C1_A0A1D5R3C1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_G7PX20_G7PX20_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A0A0MVA3_A0A0A0MVA3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A0D9QYF3_A0A0D9QYF3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A2K5MED6_A0A2K5MED6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A2K6DMA4_A0A2K6DMA4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QT64_G3QT64_GORGO_9595 and tr_A0A2K5XX65_A0A2K5XX65_MANLE_9568 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_E5S9T5_E5S9T5_TRISP_6334 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0N5E3Q1_A0A0N5E3Q1_TRIMR_70415 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0S7N5_A0A0V0S7N5_9BILA_6336 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V1DFU2_A0A0V1DFU2_TRIBR_45882 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0X5V8_A0A0V0X5V8_9BILA_92179 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0VZP4_A0A0V0VZP4_9BILA_181606 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V1LC80_A0A0V1LC80_9BILA_6335 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0ZRF2_A0A0V0ZRF2_9BILA_990121 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0YJP9_A0A0V0YJP9_TRIPS_6337 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V1N3P9_A0A0V1N3P9_9BILA_268474 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V1NVL0_A0A0V1NVL0_9BILA_92180 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V1I1W8_A0A0V1I1W8_9BILA_268475 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A0V0TKE7_A0A0V0TKE7_9BILA_144512 are exactly identical! WARNING: Sequences tr_C3ZCQ2_C3ZCQ2_BRAFL_7739 and tr_A0A210PH56_A0A210PH56_MIZYE_6573 are exactly identical! WARNING: Sequences tr_B7QJ91_B7QJ91_IXOSC_6945 and tr_T1J7R3_T1J7R3_STRMM_126957 are exactly identical! WARNING: Sequences tr_B7QJ91_B7QJ91_IXOSC_6945 and tr_T1K8Q3_T1K8Q3_TETUR_32264 are exactly identical! WARNING: Sequences tr_B7QJ91_B7QJ91_IXOSC_6945 and tr_A0A0L8IDR9_A0A0L8IDR9_OCTBM_37653 are exactly identical! WARNING: Sequences tr_B7QJ91_B7QJ91_IXOSC_6945 and tr_A0A087TYD0_A0A087TYD0_9ARAC_407821 are exactly identical! WARNING: Sequences tr_B7QJ91_B7QJ91_IXOSC_6945 and tr_A0A1V9XMF3_A0A1V9XMF3_9ACAR_418985 are exactly identical! WARNING: Sequences tr_A7SIN3_A7SIN3_NEMVE_45351 and tr_A0A2B4STI4_A0A2B4STI4_STYPI_50429 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_C0NY27_C0NY27_AJECG_447093 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A179UTN7_A0A179UTN7_BLAGS_559298 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_C5GNZ4_C5GNZ4_AJEDR_559297 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_C1HBV1_C1HBV1_PARBA_502779 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_C6HQZ8_C6HQZ8_AJECH_544712 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_F0ULS9_F0ULS9_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A1B7NSG7_A0A1B7NSG7_9EURO_1658172 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A1J9PL84_A0A1J9PL84_9EURO_1447872 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A2B7X853_A0A2B7X853_9EURO_1447875 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A2B7XDE0_A0A2B7XDE0_9EURO_2060905 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A2B7Z690_A0A2B7Z690_9EURO_73230 are exactly identical! WARNING: Sequences tr_C1G4Z6_C1G4Z6_PARBD_502780 and tr_A0A1J9QG52_A0A1J9QG52_9EURO_1658174 are exactly identical! WARNING: Sequences tr_H9GFP0_H9GFP0_ANOCA_28377 and tr_A0A151I8U7_A0A151I8U7_9HYME_456900 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_Q4WPQ7_Q4WPQ7_ASPFU_330879 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A1CHV6_A1CHV6_ASPCL_344612 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A1CWV4_A1CWV4_NEOFI_331117 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A2QJG0_A2QJG0_ASPNC_425011 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_G7XXN8_G7XXN8_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_Q0D006_Q0D006_ASPTN_341663 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_G3Y9N6_G3Y9N6_ASPNA_380704 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A0F0IFD2_A0A0F0IFD2_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A0F8XGH4_A0A0F8XGH4_9EURO_308745 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A0K8L5J1_A0A0K8L5J1_9EURO_91492 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A0L1IR81_A0A0L1IR81_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A0S7DW57_A0A0S7DW57_9EURO_293939 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A100IBH0_A0A100IBH0_ASPNG_5061 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1F7ZUF5_A0A1F7ZUF5_9EURO_109264 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1L9MVC1_A0A1L9MVC1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1L9UGV0_A0A1L9UGV0_9EURO_767769 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1L9X6X7_A0A1L9X6X7_ASPAC_690307 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1R3RUS2_A0A1R3RUS2_ASPC5_602072 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A1S9DLA3_A0A1S9DLA3_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A229X862_A0A229X862_9EURO_1245748 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A397HVI3_A0A397HVI3_9EURO_41047 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2G7FZD0_A0A2G7FZD0_9EURO_656916 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2I2GPP8_A0A2I2GPP8_9EURO_1392250 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2I1C583_A0A2I1C583_9EURO_1392255 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2I2FC38_A0A2I2FC38_9EURO_41067 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2J5HH66_A0A2J5HH66_9EURO_482145 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2T5M6U0_A0A2T5M6U0_9EURO_1392256 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A317VC38_A0A317VC38_9EURO_1448314 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A317WQJ4_A0A317WQJ4_9EURO_1450535 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A317WU22_A0A317WU22_9EURO_1448321 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A319AWR2_A0A319AWR2_9EURO_1450533 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A319DZC9_A0A319DZC9_9EURO_1448320 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A319CZ05_A0A319CZ05_9EURO_1448315 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A318Z049_A0A318Z049_9EURO_1450539 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A319FBC5_A0A319FBC5_9EURO_1448318 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2V5ICX1_A0A2V5ICX1_9EURO_1450541 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A395HA78_A0A395HA78_9EURO_1448316 are exactly identical! WARNING: Sequences tr_B8N0S5_B8N0S5_ASPFN_332952 and tr_A0A2V5HH56_A0A2V5HH56_9EURO_1450538 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_A0A2H2IGY4_A0A2H2IGY4_CAEJA_281687 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_G0MER7_G0MER7_CAEBE_135651 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_E3N9A2_E3N9A2_CAERE_31234 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_A8XPC3_A8XPC3_CAEBR_6238 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_A0A1I7U3A6_A0A1I7U3A6_9PELO_1561998 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_A0A261AV84_A0A261AV84_9PELO_1503980 are exactly identical! WARNING: Sequences sp_P41779_HM20_CAEEL_6239 and tr_A0A2G5SBA1_A0A2G5SBA1_9PELO_1611254 are exactly identical! WARNING: Sequences tr_H2R687_H2R687_PANTR_9598 and tr_A0A2R9B7F2_A0A2R9B7F2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6Y371_F6Y371_ORNAN_9258 and tr_W4XPU8_W4XPU8_STRPU_7668 are exactly identical! WARNING: Sequences tr_F6Y371_F6Y371_ORNAN_9258 and tr_A0A1V4KRJ2_A0A1V4KRJ2_PATFA_372326 are exactly identical! WARNING: Sequences tr_F6Y371_F6Y371_ORNAN_9258 and tr_A0A060Z5H5_A0A060Z5H5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B5PV38_A0A3B5PV38_XIPMA_8083 and tr_I3KSV5_I3KSV5_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5PV38_A0A3B5PV38_XIPMA_8083 and tr_G3NIP3_G3NIP3_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5PV38_A0A3B5PV38_XIPMA_8083 and tr_A0A2U9C5Q1_A0A2U9C5Q1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2SZ82_H2SZ82_TAKRU_31033 and tr_H3CM41_H3CM41_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2TZR7_H2TZR7_TAKRU_31033 and tr_H3CE35_H3CE35_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2UFE0_H2UFE0_TAKRU_31033 and tr_H3DIN3_H3DIN3_TETNG_99883 are exactly identical! WARNING: Sequences tr_G9NPP6_G9NPP6_HYPAI_452589 and tr_A0A2P4ZKH6_A0A2P4ZKH6_9HYPO_398673 are exactly identical! WARNING: Sequences sp_P48002_KNAT5_ARATH_3702 and tr_D7MAS6_D7MAS6_ARALL_81972 are exactly identical! WARNING: Sequences sp_P48002_KNAT5_ARATH_3702 and tr_R0GWW7_R0GWW7_9BRAS_81985 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A158N8Q3_A0A158N8Q3_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0B2W6A9_A0A0B2W6A9_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0K0EZA4_A0A0K0EZA4_STRVS_75913 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0K0DW83_A0A0K0DW83_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A090LFB5_A0A090LFB5_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0N4TS79_A0A0N4TS79_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0N4ZEV0_A0A0N4ZEV0_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0N5BTD2_A0A0N5BTD2_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0R3R211_A0A0R3R211_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A0R3S0M3_A0A0R3S0M3_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A183H3G1_A0A183H3G1_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A182EHU5_A0A182EHU5_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A182EQ85_A0A182EQ85_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0J9Y760_A0A0J9Y760_BRUMA_6279 and tr_A0A1I7W5K2_A0A1I7W5K2_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A251NGW3_A0A251NGW3_PRUPE_3760 and tr_A0A022QSN1_A0A022QSN1_ERYGU_4155 are exactly identical! WARNING: Sequences tr_A0A251NGW3_A0A251NGW3_PRUPE_3760 and tr_A0A022QTE1_A0A022QTE1_ERYGU_4155 are exactly identical! WARNING: Sequences tr_W4Y654_W4Y654_STRPU_7668 and tr_A0A2G8K1C5_A0A2G8K1C5_STIJA_307972 are exactly identical! WARNING: Sequences tr_H6C3F6_H6C3F6_EXODN_858893 and tr_W9ZLU6_W9ZLU6_9EURO_1182541 are exactly identical! WARNING: Sequences tr_H6C981_H6C981_EXODN_858893 and tr_W9Z8G1_W9Z8G1_9EURO_1182541 are exactly identical! WARNING: Sequences tr_J9K835_J9K835_ACYPI_7029 and tr_T1HJG9_T1HJG9_RHOPR_13249 are exactly identical! WARNING: Sequences tr_H2YC37_H2YC37_CIOSA_51511 and tr_F6QIL3_F6QIL3_CIOIN_7719 are exactly identical! WARNING: Sequences sp_B4F6V6_PBX1_XENTR_8364 and tr_W5MA69_W5MA69_LEPOC_7918 are exactly identical! WARNING: Sequences sp_B4F6V6_PBX1_XENTR_8364 and tr_A0A1L8GGE5_A0A1L8GGE5_XENLA_8355 are exactly identical! WARNING: Sequences sp_B4F6V6_PBX1_XENTR_8364 and tr_A0A1L8GN15_A0A1L8GN15_XENLA_8355 are exactly identical! WARNING: Sequences tr_E3LDG4_E3LDG4_CAERE_31234 and tr_A0A261CRS2_A0A261CRS2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3MJK8_E3MJK8_CAERE_31234 and tr_A0A261CNE8_A0A261CNE8_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8XC37_A8XC37_CAEBR_6238 and tr_A0A2G5SUJ7_A0A2G5SUJ7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_A0A3Q0KL02_A0A3Q0KL02_SCHMA_6183 and tr_A0A158REU6_A0A158REU6_HYDTA_6205 are exactly identical! WARNING: Sequences tr_A0A3Q0KL02_A0A3Q0KL02_SCHMA_6183 and tr_A0A0R3W338_A0A0R3W338_TAEAS_60517 are exactly identical! WARNING: Sequences tr_G1LZN0_G1LZN0_AILME_9646 and tr_F1MTS2_F1MTS2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1LZN0_G1LZN0_AILME_9646 and tr_A0A384D5Y8_A0A384D5Y8_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3RP70_B3RP70_TRIAD_10228 and tr_A0A369SF92_A0A369SF92_9METZ_287889 are exactly identical! WARNING: Sequences tr_F6H3V2_F6H3V2_VITVI_29760 and tr_A0A0D2TEL0_A0A0D2TEL0_GOSRA_29730 are exactly identical! WARNING: Sequences tr_F6H3V2_F6H3V2_VITVI_29760 and tr_A0A1U8JGU0_A0A1U8JGU0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_M4E5B1_M4E5B1_BRARP_51351 and tr_A0A078FKE9_A0A078FKE9_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E5B1_M4E5B1_BRARP_51351 and tr_A0A0D3DHB2_A0A0D3DHB2_BRAOL_109376 are exactly identical! WARNING: Sequences tr_W5K7I2_W5K7I2_ASTMX_7994 and tr_W5UD97_W5UD97_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A017SSE7_A0A017SSE7_9EURO_1388766 and tr_A0A1E3BQD0_A0A1E3BQD0_9EURO_573508 are exactly identical! WARNING: Sequences tr_A0A017SSE7_A0A017SSE7_9EURO_1388766 and tr_A0A1L9VYS4_A0A1L9VYS4_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A016TFT8_A0A016TFT8_9BILA_53326 and tr_W6NFV5_W6NFV5_HAECO_6289 are exactly identical! WARNING: Sequences tr_A0A016TFT8_A0A016TFT8_9BILA_53326 and tr_A0A0K0D279_A0A0K0D279_ANGCA_6313 are exactly identical! WARNING: Sequences tr_A0A067EZP8_A0A067EZP8_CITSI_2711 and tr_V4URG5_V4URG5_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A074X421_A0A074X421_9PEZI_1043004 and tr_A0A074YRM1_A0A074YRM1_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A074X421_A0A074X421_9PEZI_1043004 and tr_A0A074WSQ9_A0A074WSQ9_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A074X421_A0A074X421_9PEZI_1043004 and tr_A0A074YGY7_A0A074YGY7_AURPU_1043002 are exactly identical! WARNING: Sequences tr_A0A084QTX2_A0A084QTX2_STAC4_1283841 and tr_A0A084RFL1_A0A084RFL1_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A0D2SRA6_A0A0D2SRA6_GOSRA_29730 and tr_A0A1U8N100_A0A1U8N100_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2TH16_A0A0D2TH16_GOSRA_29730 and tr_A0A1U8JN57_A0A1U8JN57_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2U6X2_A0A0D2U6X2_GOSRA_29730 and tr_A0A1U8IXM4_A0A1U8IXM4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F4H059_A0A0F4H059_9PEZI_1047168 and tr_A0A1X7RN83_A0A1X7RN83_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0K0FXY6_A0A0K0FXY6_STRVS_75913 and tr_A0A0K0EJ83_A0A0K0EJ83_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FXY6_A0A0K0FXY6_STRVS_75913 and tr_A0A090LFS8_A0A090LFS8_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0FXY6_A0A0K0FXY6_STRVS_75913 and tr_A0A0N4ZG18_A0A0N4ZG18_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0FXY6_A0A0K0FXY6_STRVS_75913 and tr_A0A0N5B7W4_A0A0N5B7W4_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1TSI6_A0A0A1TSI6_9HYPO_1531966 and tr_A0A167RSA2_A0A167RSA2_9HYPO_1081104 are exactly identical! WARNING: Sequences tr_A0A0N5DYJ3_A0A0N5DYJ3_TRIMR_70415 and tr_A0A0V0RX11_A0A0V0RX11_9BILA_6336 are exactly identical! WARNING: Sequences tr_A0A0N5DYJ3_A0A0N5DYJ3_TRIMR_70415 and tr_A0A0V1CY77_A0A0V1CY77_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0N5DYJ3_A0A0N5DYJ3_TRIMR_70415 and tr_A0A0V0ZWZ8_A0A0V0ZWZ8_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0N5DYJ3_A0A0N5DYJ3_TRIMR_70415 and tr_A0A0V0YHZ3_A0A0V0YHZ3_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0N5DYJ3_A0A0N5DYJ3_TRIMR_70415 and tr_A0A0V1MS97_A0A0V1MS97_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0R3X7V9_A0A0R3X7V9_HYDTA_6205 and tr_A0A158R775_A0A158R775_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A0D2K8E3_A0A0D2K8E3_9EURO_1442371 and tr_A0A0D2CLN8_A0A0D2CLN8_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A1S3L5D6_A0A1S3L5D6_SALSA_8030 and tr_A0A1S3R8L1_A0A1S3R8L1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3L5D6_A0A1S3L5D6_SALSA_8030 and tr_A0A1S3S650_A0A1S3S650_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3L5D6_A0A1S3L5D6_SALSA_8030 and tr_A0A060X5L7_A0A060X5L7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3L5D6_A0A1S3L5D6_SALSA_8030 and tr_A0A060XDW8_A0A060XDW8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NQV1_A0A1S3NQV1_SALSA_8030 and tr_A0A1S3SYJ4_A0A1S3SYJ4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NXR9_A0A1S3NXR9_SALSA_8030 and tr_B5DGB1_B5DGB1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NXR9_A0A1S3NXR9_SALSA_8030 and tr_A0A061A761_A0A061A761_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R157_A0A1S3R157_SALSA_8030 and tr_A0A060VT67_A0A060VT67_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L9PAM3_A0A1L9PAM3_ASPVE_1036611 and tr_A0A1L9TYI6_A0A1L9TYI6_9EURO_1036612 are exactly identical! WARNING: Sequences tr_A0A1L9SAA3_A0A1L9SAA3_9EURO_1073090 and tr_A0A1L9S0M0_A0A1L9S0M0_ASPWE_1073089 are exactly identical! WARNING: Sequences tr_A0A1L8F1R5_A0A1L8F1R5_XENLA_8355 and tr_A0A1L8F8E1_A0A1L8F8E1_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D1VAP0_A0A1D1VAP0_RAMVA_947166 and tr_A0A1D1VCT6_A0A1D1VCT6_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1U8PGF6_A0A1U8PGF6_GOSHI_3635 and tr_A0A1U8PGW6_A0A1U8PGW6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A060VN80_A0A060VN80_ONCMY_8022 and tr_A0A060VPI9_A0A060VPI9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A060VNG1_A0A060VNG1_ONCMY_8022 and tr_A0A060VPB5_A0A060VPB5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1Z5T994_A0A1Z5T994_HORWE_1157616 and tr_A0A1Z5TB20_A0A1Z5TB20_HORWE_1157616 are exactly identical! WARNING: Sequences tr_A0A251SS35_A0A251SS35_HELAN_4232 and tr_A0A2J6JLQ9_A0A2J6JLQ9_LACSA_4236 are exactly identical! WARNING: Sequences tr_A0A251SS35_A0A251SS35_HELAN_4232 and tr_A0A103XGI5_A0A103XGI5_CYNCS_59895 are exactly identical! WARNING: Sequences tr_A0A251SS35_A0A251SS35_HELAN_4232 and tr_A0A2U1LA71_A0A2U1LA71_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A251SS35_A0A251SS35_HELAN_4232 and tr_A0A2U1M0Q3_A0A2U1M0Q3_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2D0R0Y2_A0A2D0R0Y2_ICTPU_7998 and tr_A0A2D0R308_A0A2D0R308_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R0Y2_A0A2D0R0Y2_ICTPU_7998 and tr_A0A2D0R314_A0A2D0R314_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G8JNY9_A0A2G8JNY9_STIJA_307972 and tr_A0A2G8L3P8_A0A2G8L3P8_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2G4TAG9_A0A2G4TAG9_9FUNG_1340429 and tr_A0A367K9N2_A0A367K9N2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2Y9P1M9_A0A2Y9P1M9_DELLE_9749 and tr_A0A383YZM2_A0A383YZM2_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A369GD05_A0A369GD05_9HYPO_2039875 and tr_A0A369GML3_A0A369GML3_9HYPO_2039874 are exactly identical! WARNING: Duplicate sequences found: 655 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.reduced.phy Alignment comprises 1 partitions and 56 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 56 / 56 Gaps: 1.97 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 961 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 56 / 4480 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -62317.518680] Initial branch length optimization [00:00:01 -44623.761268] Model parameter optimization (eps = 10.000000) [00:00:17 -44199.234547] AUTODETECT spr round 1 (radius: 5) [00:01:30 -24584.425327] AUTODETECT spr round 2 (radius: 10) [00:02:48 -15978.951935] AUTODETECT spr round 3 (radius: 15) [00:04:12 -12395.179725] AUTODETECT spr round 4 (radius: 20) [00:05:41 -10421.419897] AUTODETECT spr round 5 (radius: 25) [00:07:15 -9313.537197] SPR radius for FAST iterations: 25 (autodetect) [00:07:15 -9313.537197] Model parameter optimization (eps = 3.000000) [00:07:34 -9297.668844] FAST spr round 1 (radius: 25) [00:08:59 -8118.100350] FAST spr round 2 (radius: 25) [00:10:17 -7910.485234] FAST spr round 3 (radius: 25) [00:11:36 -7887.602416] FAST spr round 4 (radius: 25) [00:12:52 -7886.221214] FAST spr round 5 (radius: 25) [00:14:06 -7886.221011] Model parameter optimization (eps = 1.000000) [00:14:12 -7885.767719] SLOW spr round 1 (radius: 5) [00:15:24 -7884.872272] SLOW spr round 2 (radius: 5) [00:16:38 -7884.705819] SLOW spr round 3 (radius: 5) [00:17:51 -7884.704970] SLOW spr round 4 (radius: 10) [00:19:11 -7881.303709] SLOW spr round 5 (radius: 5) [00:20:29 -7881.228792] SLOW spr round 6 (radius: 10) [00:21:50 -7881.228514] SLOW spr round 7 (radius: 15) [00:23:16 -7878.551422] SLOW spr round 8 (radius: 5) [00:24:38 -7872.567127] SLOW spr round 9 (radius: 5) [00:25:53 -7872.567047] SLOW spr round 10 (radius: 10) [00:27:13 -7872.567000] SLOW spr round 11 (radius: 15) [00:28:39 -7872.566872] SLOW spr round 12 (radius: 20) [00:30:26 -7752.222963] SLOW spr round 13 (radius: 5) [00:31:50 -7750.352913] SLOW spr round 14 (radius: 5) [00:33:05 -7748.760919] SLOW spr round 15 (radius: 5) [00:34:21 -7748.758604] SLOW spr round 16 (radius: 10) [00:35:40 -7748.565428] SLOW spr round 17 (radius: 5) [00:36:58 -7747.915075] SLOW spr round 18 (radius: 5) [00:38:11 -7747.914963] SLOW spr round 19 (radius: 10) [00:39:28 -7747.914951] SLOW spr round 20 (radius: 15) [00:40:51 -7747.913214] SLOW spr round 21 (radius: 20) [00:42:43 -7738.834938] SLOW spr round 22 (radius: 5) [00:44:06 -7738.263235] SLOW spr round 23 (radius: 5) [00:45:20 -7738.263127] SLOW spr round 24 (radius: 10) [00:46:37 -7737.742169] SLOW spr round 25 (radius: 5) [00:47:51 -7737.729976] SLOW spr round 26 (radius: 10) [00:49:09 -7737.729203] SLOW spr round 27 (radius: 15) [00:50:33 -7737.729075] SLOW spr round 28 (radius: 20) [00:52:26 -7725.894247] SLOW spr round 29 (radius: 5) [00:53:49 -7725.797728] SLOW spr round 30 (radius: 10) [00:55:06 -7725.797671] SLOW spr round 31 (radius: 15) [00:56:32 -7725.797645] SLOW spr round 32 (radius: 20) [00:58:27 -7725.797623] SLOW spr round 33 (radius: 25) [01:00:38 -7724.138621] SLOW spr round 34 (radius: 5) [01:01:59 -7724.138570] SLOW spr round 35 (radius: 10) [01:03:18 -7724.138561] SLOW spr round 36 (radius: 15) [01:04:41 -7724.138553] SLOW spr round 37 (radius: 20) [01:06:32 -7724.138547] SLOW spr round 38 (radius: 25) [01:08:39 -7724.137163] Model parameter optimization (eps = 0.100000) [01:08:46] ML tree search #1, logLikelihood: -7723.804218 [01:08:46 -62094.516051] Initial branch length optimization [01:08:47 -44328.178528] Model parameter optimization (eps = 10.000000) [01:09:08 -43834.691185] AUTODETECT spr round 1 (radius: 5) [01:10:25 -23581.969290] AUTODETECT spr round 2 (radius: 10) [01:11:43 -16019.878843] AUTODETECT spr round 3 (radius: 15) [01:13:09 -12984.386887] AUTODETECT spr round 4 (radius: 20) [01:14:40 -10758.858475] AUTODETECT spr round 5 (radius: 25) [01:16:18 -10299.710842] SPR radius for FAST iterations: 25 (autodetect) [01:16:18 -10299.710842] Model parameter optimization (eps = 3.000000) [01:16:35 -10280.929053] FAST spr round 1 (radius: 25) [01:18:00 -8887.894346] FAST spr round 2 (radius: 25) [01:19:19 -8357.064982] FAST spr round 3 (radius: 25) [01:20:38 -8156.721489] FAST spr round 4 (radius: 25) [01:21:54 -8144.697407] FAST spr round 5 (radius: 25) [01:23:07 -8144.696038] Model parameter optimization (eps = 1.000000) [01:23:18 -8142.945801] SLOW spr round 1 (radius: 5) [01:24:35 -8139.740713] SLOW spr round 2 (radius: 5) [01:25:52 -8139.595290] SLOW spr round 3 (radius: 5) [01:27:03 -8139.595085] SLOW spr round 4 (radius: 10) [01:28:22 -7899.518337] SLOW spr round 5 (radius: 5) [01:29:38 -7753.082389] SLOW spr round 6 (radius: 5) [01:30:50 -7753.082110] SLOW spr round 7 (radius: 10) [01:32:10 -7724.400699] SLOW spr round 8 (radius: 5) [01:33:23 -7720.719818] SLOW spr round 9 (radius: 5) [01:34:34 -7720.718959] SLOW spr round 10 (radius: 10) [01:35:52 -7720.670276] SLOW spr round 11 (radius: 15) [01:37:19 -7659.790818] SLOW spr round 12 (radius: 5) [01:38:41 -7611.119991] SLOW spr round 13 (radius: 5) [01:39:56 -7611.117193] SLOW spr round 14 (radius: 10) [01:41:14 -7610.638023] SLOW spr round 15 (radius: 5) [01:42:28 -7610.637993] SLOW spr round 16 (radius: 10) [01:43:37 -7610.637972] SLOW spr round 17 (radius: 15) [01:44:56 -7610.073193] SLOW spr round 18 (radius: 5) [01:46:17 -7610.072949] SLOW spr round 19 (radius: 10) [01:47:35 -7608.595828] SLOW spr round 20 (radius: 5) [01:48:51 -7608.595762] SLOW spr round 21 (radius: 10) [01:50:10 -7608.595705] SLOW spr round 22 (radius: 15) [01:51:34 -7608.595635] SLOW spr round 23 (radius: 20) [01:53:34 -7601.922697] SLOW spr round 24 (radius: 5) [01:54:55 -7601.922642] SLOW spr round 25 (radius: 10) [01:56:13 -7601.922588] SLOW spr round 26 (radius: 15) [01:57:36 -7601.922517] SLOW spr round 27 (radius: 20) [01:59:36 -7601.699124] SLOW spr round 28 (radius: 5) [02:00:58 -7601.699111] SLOW spr round 29 (radius: 10) [02:02:17 -7601.699099] SLOW spr round 30 (radius: 15) [02:03:39 -7601.699087] SLOW spr round 31 (radius: 20) [02:05:37 -7601.699076] SLOW spr round 32 (radius: 25) [02:07:54 -7591.475417] SLOW spr round 33 (radius: 5) [02:09:18 -7589.911566] SLOW spr round 34 (radius: 5) [02:10:32 -7589.911543] SLOW spr round 35 (radius: 10) [02:11:51 -7589.017452] SLOW spr round 36 (radius: 5) [02:13:05 -7589.017420] SLOW spr round 37 (radius: 10) [02:14:23 -7589.017410] SLOW spr round 38 (radius: 15) [02:15:45 -7589.017400] SLOW spr round 39 (radius: 20) [02:17:45 -7589.017390] SLOW spr round 40 (radius: 25) [02:20:05 -7589.017381] Model parameter optimization (eps = 0.100000) [02:20:16] ML tree search #2, logLikelihood: -7588.519956 [02:20:16 -61712.872683] Initial branch length optimization [02:20:17 -43951.145699] Model parameter optimization (eps = 10.000000) [02:20:45 -43488.765698] AUTODETECT spr round 1 (radius: 5) [02:22:00 -24389.041893] AUTODETECT spr round 2 (radius: 10) [02:23:17 -15976.399856] AUTODETECT spr round 3 (radius: 15) [02:24:41 -12491.557174] AUTODETECT spr round 4 (radius: 20) [02:26:10 -10192.328767] AUTODETECT spr round 5 (radius: 25) [02:27:51 -8923.829310] SPR radius for FAST iterations: 25 (autodetect) [02:27:51 -8923.829310] Model parameter optimization (eps = 3.000000) [02:28:06 -8907.208799] FAST spr round 1 (radius: 25) [02:29:33 -7681.943230] FAST spr round 2 (radius: 25) [02:30:50 -7580.651136] FAST spr round 3 (radius: 25) [02:32:07 -7546.509065] FAST spr round 4 (radius: 25) [02:33:22 -7543.814973] FAST spr round 5 (radius: 25) [02:34:35 -7543.814781] Model parameter optimization (eps = 1.000000) [02:34:52 -7542.091622] SLOW spr round 1 (radius: 5) [02:36:08 -7539.576562] SLOW spr round 2 (radius: 5) [02:37:23 -7539.573788] SLOW spr round 3 (radius: 10) [02:38:43 -7535.670227] SLOW spr round 4 (radius: 5) [02:40:01 -7535.012093] SLOW spr round 5 (radius: 5) [02:41:14 -7535.010066] SLOW spr round 6 (radius: 10) [02:42:33 -7531.797580] SLOW spr round 7 (radius: 5) [02:43:48 -7529.169777] SLOW spr round 8 (radius: 5) [02:45:03 -7529.169690] SLOW spr round 9 (radius: 10) [02:46:21 -7529.169648] SLOW spr round 10 (radius: 15) [02:47:47 -7518.178319] SLOW spr round 11 (radius: 5) [02:49:12 -7513.929644] SLOW spr round 12 (radius: 5) [02:50:26 -7513.922848] SLOW spr round 13 (radius: 10) [02:51:45 -7513.922272] SLOW spr round 14 (radius: 15) [02:53:08 -7512.799175] SLOW spr round 15 (radius: 5) [02:54:30 -7512.798792] SLOW spr round 16 (radius: 10) [02:55:51 -7512.797812] SLOW spr round 17 (radius: 15) [02:57:15 -7512.759033] SLOW spr round 18 (radius: 20) [02:58:57 -7511.042162] SLOW spr round 19 (radius: 5) [03:00:21 -7511.025680] SLOW spr round 20 (radius: 10) [03:01:39 -7511.025108] SLOW spr round 21 (radius: 15) [03:03:04 -7511.024941] SLOW spr round 22 (radius: 20) [03:04:47 -7511.024857] SLOW spr round 23 (radius: 25) [03:06:47 -7510.714079] SLOW spr round 24 (radius: 5) [03:08:10 -7510.675460] SLOW spr round 25 (radius: 10) [03:09:29 -7510.673642] SLOW spr round 26 (radius: 15) [03:10:54 -7505.111970] SLOW spr round 27 (radius: 5) [03:12:17 -7505.110279] SLOW spr round 28 (radius: 10) [03:13:37 -7505.110167] SLOW spr round 29 (radius: 15) [03:15:01 -7503.707669] SLOW spr round 30 (radius: 5) [03:16:23 -7503.705736] SLOW spr round 31 (radius: 10) [03:17:43 -7503.705606] SLOW spr round 32 (radius: 15) [03:19:05 -7503.705566] SLOW spr round 33 (radius: 20) [03:20:49 -7488.503638] SLOW spr round 34 (radius: 5) [03:22:14 -7488.503538] SLOW spr round 35 (radius: 10) [03:23:33 -7488.503503] SLOW spr round 36 (radius: 15) [03:24:56 -7488.503465] SLOW spr round 37 (radius: 20) [03:26:38 -7488.503428] SLOW spr round 38 (radius: 25) [03:28:36 -7488.503391] Model parameter optimization (eps = 0.100000) [03:28:47] ML tree search #3, logLikelihood: -7487.761014 [03:28:47 -61768.565560] Initial branch length optimization [03:28:48 -44439.717498] Model parameter optimization (eps = 10.000000) [03:29:14 -43983.726740] AUTODETECT spr round 1 (radius: 5) [03:30:29 -24288.211893] AUTODETECT spr round 2 (radius: 10) [03:31:47 -16018.322865] AUTODETECT spr round 3 (radius: 15) [03:33:12 -11296.696789] AUTODETECT spr round 4 (radius: 20) [03:34:42 -9611.667253] AUTODETECT spr round 5 (radius: 25) [03:36:11 -9105.941835] SPR radius for FAST iterations: 25 (autodetect) [03:36:12 -9105.941835] Model parameter optimization (eps = 3.000000) [03:36:25 -9097.050708] FAST spr round 1 (radius: 25) [03:37:50 -8125.449888] FAST spr round 2 (radius: 25) [03:39:10 -8088.314664] FAST spr round 3 (radius: 25) [03:40:28 -8087.004946] FAST spr round 4 (radius: 25) [03:41:42 -8082.433509] FAST spr round 5 (radius: 25) [03:42:57 -8082.433333] Model parameter optimization (eps = 1.000000) [03:43:09 -8076.902531] SLOW spr round 1 (radius: 5) [03:44:23 -8075.205984] SLOW spr round 2 (radius: 5) [03:45:38 -8075.205348] SLOW spr round 3 (radius: 10) [03:46:58 -8066.838359] SLOW spr round 4 (radius: 5) [03:48:18 -8062.765602] SLOW spr round 5 (radius: 5) [03:49:31 -8062.765573] SLOW spr round 6 (radius: 10) [03:50:48 -8062.765567] SLOW spr round 7 (radius: 15) [03:52:16 -8062.765554] SLOW spr round 8 (radius: 20) [03:54:04 -8061.004350] SLOW spr round 9 (radius: 5) [03:55:26 -8061.004344] SLOW spr round 10 (radius: 10) [03:56:45 -8061.004343] SLOW spr round 11 (radius: 15) [03:58:13 -8061.004342] SLOW spr round 12 (radius: 20) [04:00:01 -8061.004342] SLOW spr round 13 (radius: 25) [04:02:04 -8061.004341] Model parameter optimization (eps = 0.100000) [04:02:11] ML tree search #4, logLikelihood: -8060.895261 [04:02:11 -62840.265231] Initial branch length optimization [04:02:12 -44394.136405] Model parameter optimization (eps = 10.000000) [04:02:30 -43941.667851] AUTODETECT spr round 1 (radius: 5) [04:03:45 -23755.989516] AUTODETECT spr round 2 (radius: 10) [04:05:02 -16461.994975] AUTODETECT spr round 3 (radius: 15) [04:06:24 -12603.546167] AUTODETECT spr round 4 (radius: 20) [04:07:54 -10859.629961] AUTODETECT spr round 5 (radius: 25) [04:09:29 -10446.618931] SPR radius for FAST iterations: 25 (autodetect) [04:09:29 -10446.618931] Model parameter optimization (eps = 3.000000) [04:09:43 -10422.213560] FAST spr round 1 (radius: 25) [04:11:07 -9198.351335] FAST spr round 2 (radius: 25) [04:12:25 -9120.966365] FAST spr round 3 (radius: 25) [04:13:42 -9065.404185] FAST spr round 4 (radius: 25) [04:14:54 -9065.402940] Model parameter optimization (eps = 1.000000) [04:14:59 -9064.962698] SLOW spr round 1 (radius: 5) [04:16:13 -9064.313038] SLOW spr round 2 (radius: 5) [04:17:25 -9064.312596] SLOW spr round 3 (radius: 10) [04:18:41 -9064.212021] SLOW spr round 4 (radius: 5) [04:19:59 -9063.962325] SLOW spr round 5 (radius: 5) [04:21:12 -9063.962314] SLOW spr round 6 (radius: 10) [04:22:28 -9063.946696] SLOW spr round 7 (radius: 15) [04:23:55 -9061.421630] SLOW spr round 8 (radius: 5) [04:25:15 -9060.941763] SLOW spr round 9 (radius: 5) [04:26:29 -9060.941761] SLOW spr round 10 (radius: 10) [04:27:46 -9056.502161] SLOW spr round 11 (radius: 5) [04:29:03 -9056.502158] SLOW spr round 12 (radius: 10) [04:30:20 -9056.502157] SLOW spr round 13 (radius: 15) [04:31:47 -9056.502157] SLOW spr round 14 (radius: 20) [04:33:43 -9050.482845] SLOW spr round 15 (radius: 5) [04:35:10 -9033.263061] SLOW spr round 16 (radius: 5) [04:36:28 -9031.876559] SLOW spr round 17 (radius: 5) [04:37:41 -9031.854278] SLOW spr round 18 (radius: 10) [04:38:58 -9031.743660] SLOW spr round 19 (radius: 5) [04:40:14 -9031.502868] SLOW spr round 20 (radius: 5) [04:41:27 -9031.502865] SLOW spr round 21 (radius: 10) [04:42:42 -9031.502865] SLOW spr round 22 (radius: 15) [04:44:11 -9031.502865] SLOW spr round 23 (radius: 20) [04:46:03 -9027.024741] SLOW spr round 24 (radius: 5) [04:47:27 -9027.022084] SLOW spr round 25 (radius: 10) [04:48:44 -9027.021647] SLOW spr round 26 (radius: 15) [04:50:12 -9027.021557] SLOW spr round 27 (radius: 20) [04:52:03 -9027.021540] SLOW spr round 28 (radius: 25) [04:54:24 -9021.511970] SLOW spr round 29 (radius: 5) [04:55:48 -9021.401081] SLOW spr round 30 (radius: 5) [04:57:02 -9021.401020] SLOW spr round 31 (radius: 10) [04:58:18 -9021.401018] SLOW spr round 32 (radius: 15) [04:59:45 -9021.401018] SLOW spr round 33 (radius: 20) [05:01:37 -9021.401018] SLOW spr round 34 (radius: 25) [05:03:54 -9021.401017] Model parameter optimization (eps = 0.100000) [05:04:02] ML tree search #5, logLikelihood: -9021.003700 [05:04:02 -61494.940961] Initial branch length optimization [05:04:03 -43922.245905] Model parameter optimization (eps = 10.000000) [05:04:23 -43478.776445] AUTODETECT spr round 1 (radius: 5) [05:05:38 -24583.519159] AUTODETECT spr round 2 (radius: 10) [05:06:55 -16155.011190] AUTODETECT spr round 3 (radius: 15) [05:08:21 -12676.426473] AUTODETECT spr round 4 (radius: 20) [05:09:49 -11001.782354] AUTODETECT spr round 5 (radius: 25) [05:11:26 -10305.597177] SPR radius for FAST iterations: 25 (autodetect) [05:11:26 -10305.597177] Model parameter optimization (eps = 3.000000) [05:11:42 -10290.660069] FAST spr round 1 (radius: 25) [05:13:11 -8809.654003] FAST spr round 2 (radius: 25) [05:14:30 -8640.839579] FAST spr round 3 (radius: 25) [05:15:49 -8630.560398] FAST spr round 4 (radius: 25) [05:17:06 -8627.014041] FAST spr round 5 (radius: 25) [05:18:21 -8627.013623] Model parameter optimization (eps = 1.000000) [05:18:34 -8624.223000] SLOW spr round 1 (radius: 5) [05:19:48 -8620.163006] SLOW spr round 2 (radius: 5) [05:21:02 -8617.118412] SLOW spr round 3 (radius: 5) [05:22:17 -8616.918593] SLOW spr round 4 (radius: 5) [05:23:33 -8616.917313] SLOW spr round 5 (radius: 10) [05:24:56 -8308.372587] SLOW spr round 6 (radius: 5) [05:26:14 -8266.253365] SLOW spr round 7 (radius: 5) [05:27:30 -8263.191694] SLOW spr round 8 (radius: 5) [05:28:45 -8263.191390] SLOW spr round 9 (radius: 10) [05:30:07 -8122.799743] SLOW spr round 10 (radius: 5) [05:31:26 -8050.713695] SLOW spr round 11 (radius: 5) [05:32:42 -8019.923769] SLOW spr round 12 (radius: 5) [05:33:56 -8019.923178] SLOW spr round 13 (radius: 10) [05:35:17 -8012.649062] SLOW spr round 14 (radius: 5) [05:36:33 -8012.600561] SLOW spr round 15 (radius: 10) [05:37:55 -8011.353711] SLOW spr round 16 (radius: 5) [05:39:12 -8011.353685] SLOW spr round 17 (radius: 10) [05:40:31 -8011.353663] SLOW spr round 18 (radius: 15) [05:42:00 -7979.026254] SLOW spr round 19 (radius: 5) [05:43:22 -7949.551378] SLOW spr round 20 (radius: 5) [05:44:39 -7948.924612] SLOW spr round 21 (radius: 5) [05:45:54 -7948.924538] SLOW spr round 22 (radius: 10) [05:47:13 -7948.924491] SLOW spr round 23 (radius: 15) [05:48:37 -7947.351680] SLOW spr round 24 (radius: 5) [05:49:57 -7947.351666] SLOW spr round 25 (radius: 10) [05:51:17 -7945.470495] SLOW spr round 26 (radius: 5) [05:52:33 -7945.469627] SLOW spr round 27 (radius: 10) [05:53:51 -7945.469599] SLOW spr round 28 (radius: 15) [05:55:15 -7945.469597] SLOW spr round 29 (radius: 20) [05:57:03 -7933.156672] SLOW spr round 30 (radius: 5) [05:58:28 -7924.384832] SLOW spr round 31 (radius: 5) [05:59:45 -7923.311164] SLOW spr round 32 (radius: 5) [06:00:59 -7923.305809] SLOW spr round 33 (radius: 10) [06:02:17 -7923.305731] SLOW spr round 34 (radius: 15) [06:03:42 -7912.659350] SLOW spr round 35 (radius: 5) [06:05:03 -7912.659320] SLOW spr round 36 (radius: 10) [06:06:23 -7912.518498] SLOW spr round 37 (radius: 5) [06:07:37 -7912.506775] SLOW spr round 38 (radius: 10) [06:08:56 -7912.505168] SLOW spr round 39 (radius: 15) [06:10:20 -7912.504326] SLOW spr round 40 (radius: 20) [06:12:14 -7897.457555] SLOW spr round 41 (radius: 5) [06:13:37 -7656.038450] SLOW spr round 42 (radius: 5) [06:14:54 -7601.039839] SLOW spr round 43 (radius: 5) [06:16:08 -7600.365539] SLOW spr round 44 (radius: 5) [06:17:23 -7600.354095] SLOW spr round 45 (radius: 10) [06:18:43 -7519.021936] SLOW spr round 46 (radius: 5) [06:20:00 -7509.559385] SLOW spr round 47 (radius: 5) [06:21:14 -7509.558176] SLOW spr round 48 (radius: 10) [06:22:31 -7505.979045] SLOW spr round 49 (radius: 5) [06:23:46 -7505.977829] SLOW spr round 50 (radius: 10) [06:25:05 -7505.977394] SLOW spr round 51 (radius: 15) [06:26:30 -7491.089567] SLOW spr round 52 (radius: 5) [06:27:50 -7491.089321] SLOW spr round 53 (radius: 10) [06:29:08 -7491.089312] SLOW spr round 54 (radius: 15) [06:30:33 -7491.089307] SLOW spr round 55 (radius: 20) [06:32:25 -7490.440786] SLOW spr round 56 (radius: 5) [06:33:46 -7488.194975] SLOW spr round 57 (radius: 5) [06:35:01 -7488.194928] SLOW spr round 58 (radius: 10) [06:36:17 -7488.194924] SLOW spr round 59 (radius: 15) [06:37:43 -7488.194919] SLOW spr round 60 (radius: 20) [06:39:34 -7488.194915] SLOW spr round 61 (radius: 25) [06:41:47 -7486.813996] SLOW spr round 62 (radius: 5) [06:43:09 -7483.027050] SLOW spr round 63 (radius: 5) [06:44:25 -7483.027023] SLOW spr round 64 (radius: 10) [06:45:42 -7483.027019] SLOW spr round 65 (radius: 15) [06:47:07 -7483.027015] SLOW spr round 66 (radius: 20) [06:48:58 -7483.027010] SLOW spr round 67 (radius: 25) [06:51:12 -7483.027006] Model parameter optimization (eps = 0.100000) [06:51:22] ML tree search #6, logLikelihood: -7481.954227 [06:51:22 -62580.457507] Initial branch length optimization [06:51:23 -44850.941586] Model parameter optimization (eps = 10.000000) [06:51:49 -44364.936724] AUTODETECT spr round 1 (radius: 5) [06:53:02 -23793.431037] AUTODETECT spr round 2 (radius: 10) [06:54:19 -16002.233435] AUTODETECT spr round 3 (radius: 15) [06:55:45 -12386.445864] AUTODETECT spr round 4 (radius: 20) [06:57:16 -10611.855231] AUTODETECT spr round 5 (radius: 25) [06:58:51 -9713.466687] SPR radius for FAST iterations: 25 (autodetect) [06:58:51 -9713.466687] Model parameter optimization (eps = 3.000000) [06:59:11 -9697.508607] FAST spr round 1 (radius: 25) [07:00:39 -8574.915084] FAST spr round 2 (radius: 25) [07:02:00 -8484.465862] FAST spr round 3 (radius: 25) [07:03:21 -8481.123973] FAST spr round 4 (radius: 25) [07:04:39 -8481.121146] Model parameter optimization (eps = 1.000000) [07:04:50 -8479.819880] SLOW spr round 1 (radius: 5) [07:06:07 -8479.653023] SLOW spr round 2 (radius: 5) [07:07:24 -8469.097908] SLOW spr round 3 (radius: 5) [07:08:39 -8469.097173] SLOW spr round 4 (radius: 10) [07:10:00 -8458.380289] SLOW spr round 5 (radius: 5) [07:11:19 -8449.218894] SLOW spr round 6 (radius: 5) [07:12:35 -8447.340482] SLOW spr round 7 (radius: 5) [07:13:52 -8421.903594] SLOW spr round 8 (radius: 5) [07:15:05 -8421.903386] SLOW spr round 9 (radius: 10) [07:16:26 -8420.983516] SLOW spr round 10 (radius: 5) [07:17:45 -8420.982861] SLOW spr round 11 (radius: 10) [07:19:07 -8401.460071] SLOW spr round 12 (radius: 5) [07:20:25 -8401.459625] SLOW spr round 13 (radius: 10) [07:21:46 -8401.459324] SLOW spr round 14 (radius: 15) [07:23:12 -8401.459055] SLOW spr round 15 (radius: 20) [07:24:59 -8398.791869] SLOW spr round 16 (radius: 5) [07:26:25 -8323.695732] SLOW spr round 17 (radius: 5) [07:27:43 -8307.490372] SLOW spr round 18 (radius: 5) [07:28:56 -8307.490303] SLOW spr round 19 (radius: 10) [07:30:14 -8306.163660] SLOW spr round 20 (radius: 5) [07:31:30 -8306.163524] SLOW spr round 21 (radius: 10) [07:32:48 -8306.163442] SLOW spr round 22 (radius: 15) [07:34:10 -8306.163382] SLOW spr round 23 (radius: 20) [07:35:55 -8274.118459] SLOW spr round 24 (radius: 5) [07:37:19 -8245.543088] SLOW spr round 25 (radius: 5) [07:38:34 -8245.542916] SLOW spr round 26 (radius: 10) [07:39:53 -8245.542851] SLOW spr round 27 (radius: 15) [07:41:18 -8245.542788] SLOW spr round 28 (radius: 20) [07:43:05 -8245.542726] SLOW spr round 29 (radius: 25) [07:45:01 -8240.472907] SLOW spr round 30 (radius: 5) [07:46:16 -8236.459070] SLOW spr round 31 (radius: 5) [07:47:39 -8236.458943] SLOW spr round 32 (radius: 10) [07:49:17 -8232.089174] SLOW spr round 33 (radius: 5) [07:50:52 -8229.453740] SLOW spr round 34 (radius: 5) [07:52:22 -8229.452842] SLOW spr round 35 (radius: 10) [07:53:57 -8229.452606] SLOW spr round 36 (radius: 15) [07:55:41 -8184.684954] SLOW spr round 37 (radius: 5) [07:57:21 -8184.675717] SLOW spr round 38 (radius: 10) [07:58:57 -8184.600647] SLOW spr round 39 (radius: 15) [08:00:41 -8184.600446] SLOW spr round 40 (radius: 20) [08:02:50 -8184.600252] SLOW spr round 41 (radius: 25) [08:05:14 -8184.600066] Model parameter optimization (eps = 0.100000) [08:05:34] ML tree search #7, logLikelihood: -8183.329309 [08:05:34 -62340.829412] Initial branch length optimization [08:05:35 -44435.871781] Model parameter optimization (eps = 10.000000) [08:05:58 -43962.622406] AUTODETECT spr round 1 (radius: 5) [08:07:29 -23769.266321] AUTODETECT spr round 2 (radius: 10) [08:09:02 -16937.543702] AUTODETECT spr round 3 (radius: 15) [08:10:44 -14156.501300] AUTODETECT spr round 4 (radius: 20) [08:12:39 -12214.031415] AUTODETECT spr round 5 (radius: 25) [08:14:37 -10611.976691] SPR radius for FAST iterations: 25 (autodetect) [08:14:37 -10611.976691] Model parameter optimization (eps = 3.000000) [08:14:55 -10580.524606] FAST spr round 1 (radius: 25) [08:16:37 -8873.237445] FAST spr round 2 (radius: 25) [08:18:11 -8750.006311] FAST spr round 3 (radius: 25) [08:19:43 -8701.927122] FAST spr round 4 (radius: 25) [08:21:12 -8700.459398] FAST spr round 5 (radius: 25) [08:22:40 -8699.374249] FAST spr round 6 (radius: 25) [08:24:08 -8699.373517] Model parameter optimization (eps = 1.000000) [08:24:23 -8697.698029] SLOW spr round 1 (radius: 5) [08:25:52 -8696.228219] SLOW spr round 2 (radius: 5) [08:27:23 -8691.564206] SLOW spr round 3 (radius: 5) [08:28:52 -8686.884134] SLOW spr round 4 (radius: 5) [08:30:22 -8686.880892] SLOW spr round 5 (radius: 10) [08:31:57 -8685.697066] SLOW spr round 6 (radius: 5) [08:33:32 -8682.100839] SLOW spr round 7 (radius: 5) [08:35:02 -8682.100748] SLOW spr round 8 (radius: 10) [08:36:38 -8682.100554] SLOW spr round 9 (radius: 15) [08:38:27 -8681.500460] SLOW spr round 10 (radius: 5) [08:40:07 -8681.500227] SLOW spr round 11 (radius: 10) [08:41:44 -8681.500103] SLOW spr round 12 (radius: 15) [08:43:29 -8681.500059] SLOW spr round 13 (radius: 20) [08:45:38 -8672.266057] SLOW spr round 14 (radius: 5) [08:47:19 -8664.924389] SLOW spr round 15 (radius: 5) [08:48:51 -8661.944939] SLOW spr round 16 (radius: 5) [08:50:22 -8660.150357] SLOW spr round 17 (radius: 5) [08:51:52 -8660.045422] SLOW spr round 18 (radius: 5) [08:53:23 -8660.044679] SLOW spr round 19 (radius: 10) [08:55:02 -8660.044511] SLOW spr round 20 (radius: 15) [08:56:50 -8660.044444] SLOW spr round 21 (radius: 20) [08:58:56 -8653.192972] SLOW spr round 22 (radius: 5) [09:00:37 -8653.192786] SLOW spr round 23 (radius: 10) [09:02:15 -8652.968677] SLOW spr round 24 (radius: 5) [09:03:52 -8652.968509] SLOW spr round 25 (radius: 10) [09:05:28 -8652.968436] SLOW spr round 26 (radius: 15) [09:07:15 -8652.968401] SLOW spr round 27 (radius: 20) [09:09:17 -8652.968384] SLOW spr round 28 (radius: 25) [09:11:38 -8649.265757] SLOW spr round 29 (radius: 5) [09:13:17 -8649.265747] SLOW spr round 30 (radius: 10) [09:14:53 -8649.265742] SLOW spr round 31 (radius: 15) [09:16:35 -8649.265740] SLOW spr round 32 (radius: 20) [09:18:22 -8649.265738] SLOW spr round 33 (radius: 25) [09:20:26 -8649.265738] Model parameter optimization (eps = 0.100000) [09:20:34] ML tree search #8, logLikelihood: -8649.045763 [09:20:35 -62178.246221] Initial branch length optimization [09:20:36 -44338.266146] Model parameter optimization (eps = 10.000000) [09:20:56 -43904.790754] AUTODETECT spr round 1 (radius: 5) [09:22:17 -25034.512418] AUTODETECT spr round 2 (radius: 10) [09:23:42 -15430.001473] AUTODETECT spr round 3 (radius: 15) [09:24:42 -12110.134291] AUTODETECT spr round 4 (radius: 20) [09:25:49 -11209.086121] AUTODETECT spr round 5 (radius: 25) [09:27:28 -10221.775243] SPR radius for FAST iterations: 25 (autodetect) [09:27:28 -10221.775243] Model parameter optimization (eps = 3.000000) [09:27:42 -10198.683163] FAST spr round 1 (radius: 25) [09:29:07 -8807.063144] FAST spr round 2 (radius: 25) [09:30:31 -8326.649800] FAST spr round 3 (radius: 25) [09:31:53 -8151.182930] FAST spr round 4 (radius: 25) [09:33:14 -8008.315799] FAST spr round 5 (radius: 25) [09:34:34 -7978.435032] FAST spr round 6 (radius: 25) [09:35:51 -7957.814120] FAST spr round 7 (radius: 25) [09:37:08 -7955.709154] FAST spr round 8 (radius: 25) [09:38:24 -7955.672713] Model parameter optimization (eps = 1.000000) [09:38:34 -7954.616996] SLOW spr round 1 (radius: 5) [09:39:50 -7952.694436] SLOW spr round 2 (radius: 5) [09:41:06 -7947.834746] SLOW spr round 3 (radius: 5) [09:42:21 -7947.834425] SLOW spr round 4 (radius: 10) [09:43:43 -7816.509771] SLOW spr round 5 (radius: 5) [09:45:02 -7811.019576] SLOW spr round 6 (radius: 5) [09:46:17 -7810.701133] SLOW spr round 7 (radius: 5) [09:47:30 -7810.700892] SLOW spr round 8 (radius: 10) [09:48:49 -7810.186573] SLOW spr round 9 (radius: 5) [09:50:06 -7810.186035] SLOW spr round 10 (radius: 10) [09:51:27 -7809.818552] SLOW spr round 11 (radius: 5) [09:52:46 -7792.380305] SLOW spr round 12 (radius: 5) [09:54:00 -7792.380133] SLOW spr round 13 (radius: 10) [09:55:18 -7791.931065] SLOW spr round 14 (radius: 5) [09:56:34 -7791.930894] SLOW spr round 15 (radius: 10) [09:57:52 -7791.930725] SLOW spr round 16 (radius: 15) [09:59:22 -7774.384877] SLOW spr round 17 (radius: 5) [10:00:45 -7768.808492] SLOW spr round 18 (radius: 5) [10:02:01 -7768.808321] SLOW spr round 19 (radius: 10) [10:03:20 -7768.808148] SLOW spr round 20 (radius: 15) [10:04:46 -7768.807979] SLOW spr round 21 (radius: 20) [10:06:35 -7766.149498] SLOW spr round 22 (radius: 5) [10:07:58 -7766.149285] SLOW spr round 23 (radius: 10) [10:09:19 -7755.048500] SLOW spr round 24 (radius: 5) [10:10:35 -7755.048334] SLOW spr round 25 (radius: 10) [10:11:55 -7755.048169] SLOW spr round 26 (radius: 15) [10:13:20 -7755.048004] SLOW spr round 27 (radius: 20) [10:15:08 -7755.047840] SLOW spr round 28 (radius: 25) [10:17:09 -7754.456406] SLOW spr round 29 (radius: 5) [10:18:34 -7754.456031] SLOW spr round 30 (radius: 10) [10:19:55 -7753.975832] SLOW spr round 31 (radius: 5) [10:21:11 -7753.975669] SLOW spr round 32 (radius: 10) [10:22:30 -7753.975508] SLOW spr round 33 (radius: 15) [10:23:55 -7753.975348] SLOW spr round 34 (radius: 20) [10:25:42 -7753.975188] SLOW spr round 35 (radius: 25) [10:27:45 -7753.975029] Model parameter optimization (eps = 0.100000) [10:27:58] ML tree search #9, logLikelihood: -7752.374914 [10:27:58 -61269.285448] Initial branch length optimization [10:27:59 -44124.175705] Model parameter optimization (eps = 10.000000) [10:28:19 -43608.101599] AUTODETECT spr round 1 (radius: 5) [10:29:36 -24494.233981] AUTODETECT spr round 2 (radius: 10) [10:30:53 -16227.869536] AUTODETECT spr round 3 (radius: 15) [10:32:16 -12081.353229] AUTODETECT spr round 4 (radius: 20) [10:33:47 -10363.045164] AUTODETECT spr round 5 (radius: 25) [10:35:21 -9856.443615] SPR radius for FAST iterations: 25 (autodetect) [10:35:21 -9856.443615] Model parameter optimization (eps = 3.000000) [10:35:37 -9830.263752] FAST spr round 1 (radius: 25) [10:37:04 -8873.695117] FAST spr round 2 (radius: 25) [10:38:24 -8829.343373] FAST spr round 3 (radius: 25) [10:39:39 -8828.187840] FAST spr round 4 (radius: 25) [10:40:53 -8828.129141] Model parameter optimization (eps = 1.000000) [10:41:02 -8827.544284] SLOW spr round 1 (radius: 5) [10:42:17 -8824.070265] SLOW spr round 2 (radius: 5) [10:43:30 -8820.949196] SLOW spr round 3 (radius: 5) [10:44:45 -8820.835603] SLOW spr round 4 (radius: 5) [10:46:01 -8820.835142] SLOW spr round 5 (radius: 10) [10:47:21 -8811.262316] SLOW spr round 6 (radius: 5) [10:48:40 -8805.223980] SLOW spr round 7 (radius: 5) [10:49:55 -8804.448667] SLOW spr round 8 (radius: 5) [10:51:10 -8803.594078] SLOW spr round 9 (radius: 5) [10:52:24 -8803.593811] SLOW spr round 10 (radius: 10) [10:53:43 -8800.498923] SLOW spr round 11 (radius: 5) [10:55:05 -8799.427062] SLOW spr round 12 (radius: 5) [10:56:22 -8799.426914] SLOW spr round 13 (radius: 10) [10:57:40 -8799.290127] SLOW spr round 14 (radius: 5) [10:58:59 -8799.289991] SLOW spr round 15 (radius: 10) [11:00:17 -8799.289922] SLOW spr round 16 (radius: 15) [11:01:46 -8796.919720] SLOW spr round 17 (radius: 5) [11:03:09 -8796.919488] SLOW spr round 18 (radius: 10) [11:04:28 -8796.919465] SLOW spr round 19 (radius: 15) [11:05:56 -8796.919435] SLOW spr round 20 (radius: 20) [11:07:39 -8795.014524] SLOW spr round 21 (radius: 5) [11:09:03 -8793.314079] SLOW spr round 22 (radius: 5) [11:10:18 -8793.305174] SLOW spr round 23 (radius: 10) [11:11:35 -8793.305157] SLOW spr round 24 (radius: 15) [11:13:01 -8793.305153] SLOW spr round 25 (radius: 20) [11:14:44 -8793.305150] SLOW spr round 26 (radius: 25) [11:16:46 -8769.732571] SLOW spr round 27 (radius: 5) [11:18:10 -8721.819132] SLOW spr round 28 (radius: 5) [11:19:29 -8714.043575] SLOW spr round 29 (radius: 5) [11:20:45 -8713.618733] SLOW spr round 30 (radius: 5) [11:21:58 -8713.617410] SLOW spr round 31 (radius: 10) [11:23:16 -8702.627371] SLOW spr round 32 (radius: 5) [11:24:34 -8701.829158] SLOW spr round 33 (radius: 5) [11:25:48 -8701.828739] SLOW spr round 34 (radius: 10) [11:27:05 -8701.828690] SLOW spr round 35 (radius: 15) [11:28:33 -8683.711951] SLOW spr round 36 (radius: 5) [11:29:56 -8679.655884] SLOW spr round 37 (radius: 5) [11:31:11 -8679.655882] SLOW spr round 38 (radius: 10) [11:32:27 -8679.655881] SLOW spr round 39 (radius: 15) [11:33:53 -8679.655880] SLOW spr round 40 (radius: 20) [11:35:37 -8678.595621] SLOW spr round 41 (radius: 5) [11:37:01 -8678.595562] SLOW spr round 42 (radius: 10) [11:38:20 -8678.595561] SLOW spr round 43 (radius: 15) [11:39:46 -8678.595560] SLOW spr round 44 (radius: 20) [11:41:30 -8662.568719] SLOW spr round 45 (radius: 5) [11:42:52 -8662.568718] SLOW spr round 46 (radius: 10) [11:44:11 -8662.568717] SLOW spr round 47 (radius: 15) [11:45:37 -8662.568716] SLOW spr round 48 (radius: 20) [11:47:22 -8662.568715] SLOW spr round 49 (radius: 25) [11:49:26 -8662.386336] SLOW spr round 50 (radius: 5) [11:50:48 -8662.386334] SLOW spr round 51 (radius: 10) [11:52:06 -8662.386333] SLOW spr round 52 (radius: 15) [11:53:33 -8662.386332] SLOW spr round 53 (radius: 20) [11:55:18 -8662.386331] SLOW spr round 54 (radius: 25) [11:57:20 -8662.386330] Model parameter optimization (eps = 0.100000) [11:57:31] ML tree search #10, logLikelihood: -8661.562209 [11:57:31 -61615.735481] Initial branch length optimization [11:57:32 -44160.897232] Model parameter optimization (eps = 10.000000) [11:57:52 -43650.095540] AUTODETECT spr round 1 (radius: 5) [11:59:06 -23867.772655] AUTODETECT spr round 2 (radius: 10) [12:00:23 -15459.630077] AUTODETECT spr round 3 (radius: 15) [12:01:46 -11600.532100] AUTODETECT spr round 4 (radius: 20) [12:03:19 -10058.801440] AUTODETECT spr round 5 (radius: 25) [12:04:55 -9691.837745] SPR radius for FAST iterations: 25 (autodetect) [12:04:55 -9691.837745] Model parameter optimization (eps = 3.000000) [12:05:11 -9667.200407] FAST spr round 1 (radius: 25) [12:06:41 -8119.770665] FAST spr round 2 (radius: 25) [12:07:57 -7689.551511] FAST spr round 3 (radius: 25) [12:09:14 -7658.647773] FAST spr round 4 (radius: 25) [12:10:29 -7652.561571] FAST spr round 5 (radius: 25) [12:11:42 -7646.838253] FAST spr round 6 (radius: 25) [12:12:54 -7646.838097] Model parameter optimization (eps = 1.000000) [12:13:00 -7646.432545] SLOW spr round 1 (radius: 5) [12:14:13 -7643.855699] SLOW spr round 2 (radius: 5) [12:15:26 -7637.825423] SLOW spr round 3 (radius: 5) [12:16:37 -7637.825275] SLOW spr round 4 (radius: 10) [12:17:57 -7578.534110] SLOW spr round 5 (radius: 5) [12:19:14 -7565.896518] SLOW spr round 6 (radius: 5) [12:20:27 -7565.895378] SLOW spr round 7 (radius: 10) [12:21:44 -7562.131633] SLOW spr round 8 (radius: 5) [12:23:00 -7560.431622] SLOW spr round 9 (radius: 5) [12:24:13 -7560.430822] SLOW spr round 10 (radius: 10) [12:25:32 -7560.430345] SLOW spr round 11 (radius: 15) [12:26:58 -7547.691816] SLOW spr round 12 (radius: 5) [12:28:20 -7529.261076] SLOW spr round 13 (radius: 5) [12:29:36 -7528.342361] SLOW spr round 14 (radius: 5) [12:30:48 -7528.342094] SLOW spr round 15 (radius: 10) [12:32:08 -7528.153567] SLOW spr round 16 (radius: 5) [12:33:21 -7528.152636] SLOW spr round 17 (radius: 10) [12:34:40 -7528.151962] SLOW spr round 18 (radius: 15) [12:36:05 -7521.562567] SLOW spr round 19 (radius: 5) [12:37:26 -7521.562263] SLOW spr round 20 (radius: 10) [12:38:44 -7521.562042] SLOW spr round 21 (radius: 15) [12:40:08 -7521.561878] SLOW spr round 22 (radius: 20) [12:41:59 -7459.162318] SLOW spr round 23 (radius: 5) [12:43:23 -7458.398939] SLOW spr round 24 (radius: 5) [12:44:37 -7458.397032] SLOW spr round 25 (radius: 10) [12:45:56 -7458.087742] SLOW spr round 26 (radius: 5) [12:47:11 -7458.086834] SLOW spr round 27 (radius: 10) [12:48:30 -7454.769680] SLOW spr round 28 (radius: 5) [12:49:45 -7454.769228] SLOW spr round 29 (radius: 10) [12:51:05 -7454.768886] SLOW spr round 30 (radius: 15) [12:52:32 -7451.409310] SLOW spr round 31 (radius: 5) [12:53:53 -7451.217515] SLOW spr round 32 (radius: 5) [12:55:07 -7451.217258] SLOW spr round 33 (radius: 10) [12:56:25 -7451.217190] SLOW spr round 34 (radius: 15) [12:57:51 -7449.982356] SLOW spr round 35 (radius: 5) [12:59:13 -7449.981967] SLOW spr round 36 (radius: 10) [13:00:33 -7449.981899] SLOW spr round 37 (radius: 15) [13:01:57 -7449.981839] SLOW spr round 38 (radius: 20) [13:03:45 -7432.564043] SLOW spr round 39 (radius: 5) [13:05:07 -7432.562805] SLOW spr round 40 (radius: 10) [13:06:27 -7432.562493] SLOW spr round 41 (radius: 15) [13:07:52 -7431.370378] SLOW spr round 42 (radius: 5) [13:09:12 -7431.370306] SLOW spr round 43 (radius: 10) [13:10:31 -7431.370210] SLOW spr round 44 (radius: 15) [13:11:55 -7430.930551] SLOW spr round 45 (radius: 5) [13:13:18 -7429.498664] SLOW spr round 46 (radius: 5) [13:14:33 -7428.487823] SLOW spr round 47 (radius: 5) [13:15:45 -7428.486008] SLOW spr round 48 (radius: 10) [13:17:04 -7428.486004] SLOW spr round 49 (radius: 15) [13:18:28 -7428.486002] SLOW spr round 50 (radius: 20) [13:20:17 -7428.486001] SLOW spr round 51 (radius: 25) [13:22:22 -7420.491530] SLOW spr round 52 (radius: 5) [13:23:44 -7420.491519] SLOW spr round 53 (radius: 10) [13:25:03 -7413.722223] SLOW spr round 54 (radius: 5) [13:26:17 -7413.722223] SLOW spr round 55 (radius: 10) [13:27:36 -7413.722223] SLOW spr round 56 (radius: 15) [13:29:02 -7413.404662] SLOW spr round 57 (radius: 5) [13:30:22 -7413.404642] SLOW spr round 58 (radius: 10) [13:31:40 -7413.404642] SLOW spr round 59 (radius: 15) [13:33:05 -7413.404642] SLOW spr round 60 (radius: 20) [13:34:57 -7406.620879] SLOW spr round 61 (radius: 5) [13:36:19 -7406.606821] SLOW spr round 62 (radius: 10) [13:37:38 -7406.606735] SLOW spr round 63 (radius: 15) [13:39:01 -7406.606716] SLOW spr round 64 (radius: 20) [13:40:50 -7406.606711] SLOW spr round 65 (radius: 25) [13:42:57 -7398.761997] SLOW spr round 66 (radius: 5) [13:44:18 -7398.761996] SLOW spr round 67 (radius: 10) [13:45:36 -7398.761996] SLOW spr round 68 (radius: 15) [13:47:01 -7398.761996] SLOW spr round 69 (radius: 20) [13:48:50 -7398.761996] SLOW spr round 70 (radius: 25) [13:50:55 -7398.761996] Model parameter optimization (eps = 0.100000) [13:51:00] ML tree search #11, logLikelihood: -7398.718538 [13:51:00 -62026.912391] Initial branch length optimization [13:51:01 -44467.927326] Model parameter optimization (eps = 10.000000) [13:51:23 -43956.934386] AUTODETECT spr round 1 (radius: 5) [13:52:37 -23392.134261] AUTODETECT spr round 2 (radius: 10) [13:53:55 -16170.592222] AUTODETECT spr round 3 (radius: 15) [13:55:19 -12853.627941] AUTODETECT spr round 4 (radius: 20) [13:56:48 -11578.438279] AUTODETECT spr round 5 (radius: 25) [13:58:17 -10560.384909] SPR radius for FAST iterations: 25 (autodetect) [13:58:17 -10560.384909] Model parameter optimization (eps = 3.000000) [13:58:37 -10538.313265] FAST spr round 1 (radius: 25) [14:00:03 -9336.727114] FAST spr round 2 (radius: 25) [14:01:23 -9253.587438] FAST spr round 3 (radius: 25) [14:02:40 -9245.110017] FAST spr round 4 (radius: 25) [14:03:55 -9245.108898] Model parameter optimization (eps = 1.000000) [14:04:12 -9243.160958] SLOW spr round 1 (radius: 5) [14:05:27 -9241.601047] SLOW spr round 2 (radius: 5) [14:06:43 -9241.599884] SLOW spr round 3 (radius: 10) [14:08:03 -9240.399084] SLOW spr round 4 (radius: 5) [14:09:22 -9240.398784] SLOW spr round 5 (radius: 10) [14:10:41 -9240.398559] SLOW spr round 6 (radius: 15) [14:12:11 -9240.311174] SLOW spr round 7 (radius: 20) [14:13:57 -9239.094257] SLOW spr round 8 (radius: 5) [14:15:20 -9238.027003] SLOW spr round 9 (radius: 5) [14:16:36 -9238.024660] SLOW spr round 10 (radius: 10) [14:17:54 -9236.840109] SLOW spr round 11 (radius: 5) [14:19:14 -9235.020008] SLOW spr round 12 (radius: 5) [14:20:31 -9234.157160] SLOW spr round 13 (radius: 5) [14:21:45 -9234.156112] SLOW spr round 14 (radius: 10) [14:23:03 -9234.155776] SLOW spr round 15 (radius: 15) [14:24:33 -9234.006269] SLOW spr round 16 (radius: 5) [14:25:56 -9234.005952] SLOW spr round 17 (radius: 10) [14:27:16 -9234.005690] SLOW spr round 18 (radius: 15) [14:28:46 -9234.005430] SLOW spr round 19 (radius: 20) [14:30:30 -9233.829852] SLOW spr round 20 (radius: 5) [14:31:52 -9233.829593] SLOW spr round 21 (radius: 10) [14:33:13 -9233.829334] SLOW spr round 22 (radius: 15) [14:34:42 -9233.829075] SLOW spr round 23 (radius: 20) [14:36:25 -9233.828816] SLOW spr round 24 (radius: 25) [14:38:29 -9233.325141] SLOW spr round 25 (radius: 5) [14:39:54 -9233.324989] SLOW spr round 26 (radius: 10) [14:41:14 -9232.781016] SLOW spr round 27 (radius: 5) [14:42:32 -9232.741574] SLOW spr round 28 (radius: 10) [14:43:49 -9232.741234] SLOW spr round 29 (radius: 15) [14:45:20 -9232.740937] SLOW spr round 30 (radius: 20) [14:47:05 -9232.740641] SLOW spr round 31 (radius: 25) [14:49:09 -9232.740345] Model parameter optimization (eps = 0.100000) [14:49:19] ML tree search #12, logLikelihood: -9232.259209 [14:49:19 -62042.730911] Initial branch length optimization [14:49:20 -44312.073990] Model parameter optimization (eps = 10.000000) [14:49:41 -43815.668854] AUTODETECT spr round 1 (radius: 5) [14:50:55 -23605.516807] AUTODETECT spr round 2 (radius: 10) [14:52:13 -15336.446046] AUTODETECT spr round 3 (radius: 15) [14:53:33 -12697.580448] AUTODETECT spr round 4 (radius: 20) [14:55:02 -10982.617643] AUTODETECT spr round 5 (radius: 25) [14:56:37 -10070.139558] SPR radius for FAST iterations: 25 (autodetect) [14:56:37 -10070.139558] Model parameter optimization (eps = 3.000000) [14:56:55 -10041.526339] FAST spr round 1 (radius: 25) [14:58:25 -8387.158385] FAST spr round 2 (radius: 25) [14:59:48 -8269.002091] FAST spr round 3 (radius: 25) [15:01:05 -8263.216292] FAST spr round 4 (radius: 25) [15:02:21 -8263.211964] Model parameter optimization (eps = 1.000000) [15:02:33 -8258.777503] SLOW spr round 1 (radius: 5) [15:03:49 -8254.095861] SLOW spr round 2 (radius: 5) [15:05:03 -8253.045907] SLOW spr round 3 (radius: 5) [15:06:17 -8253.041708] SLOW spr round 4 (radius: 10) [15:07:35 -8240.001474] SLOW spr round 5 (radius: 5) [15:08:55 -8232.982565] SLOW spr round 6 (radius: 5) [15:10:09 -8232.982115] SLOW spr round 7 (radius: 10) [15:11:26 -8232.142568] SLOW spr round 8 (radius: 5) [15:12:42 -8230.538647] SLOW spr round 9 (radius: 5) [15:13:54 -8230.358511] SLOW spr round 10 (radius: 5) [15:15:05 -8230.358126] SLOW spr round 11 (radius: 10) [15:16:21 -8230.357904] SLOW spr round 12 (radius: 15) [15:17:45 -8225.050737] SLOW spr round 13 (radius: 5) [15:19:06 -8224.938044] SLOW spr round 14 (radius: 5) [15:20:19 -8224.908717] SLOW spr round 15 (radius: 10) [15:21:37 -8224.907924] SLOW spr round 16 (radius: 15) [15:23:02 -8224.907607] SLOW spr round 17 (radius: 20) [15:24:50 -8218.860011] SLOW spr round 18 (radius: 5) [15:26:13 -8218.853034] SLOW spr round 19 (radius: 10) [15:27:31 -8216.164474] SLOW spr round 20 (radius: 5) [15:28:32 -8216.164404] SLOW spr round 21 (radius: 10) [15:29:27 -8216.164350] SLOW spr round 22 (radius: 15) [15:30:27 -8216.164297] SLOW spr round 23 (radius: 20) [15:31:42 -8216.144140] SLOW spr round 24 (radius: 25) [15:33:09 -8207.809953] SLOW spr round 25 (radius: 5) [15:34:09 -8199.038416] SLOW spr round 26 (radius: 5) [15:35:03 -8197.155794] SLOW spr round 27 (radius: 5) [15:35:55 -8197.154954] SLOW spr round 28 (radius: 10) [15:37:12 -8197.154709] SLOW spr round 29 (radius: 15) [15:38:37 -8196.922022] SLOW spr round 30 (radius: 5) [15:39:59 -8196.921896] SLOW spr round 31 (radius: 10) [15:41:19 -8196.921801] SLOW spr round 32 (radius: 15) [15:42:45 -8196.921727] SLOW spr round 33 (radius: 20) [15:44:32 -8195.362114] SLOW spr round 34 (radius: 5) [15:45:57 -8071.400657] SLOW spr round 35 (radius: 5) [15:47:12 -8046.673653] SLOW spr round 36 (radius: 5) [15:48:28 -8046.672591] SLOW spr round 37 (radius: 10) [15:49:47 -8046.149413] SLOW spr round 38 (radius: 5) [15:51:06 -8044.608440] SLOW spr round 39 (radius: 5) [15:52:22 -8042.967207] SLOW spr round 40 (radius: 5) [15:53:36 -8041.578952] SLOW spr round 41 (radius: 5) [15:54:50 -8041.543995] SLOW spr round 42 (radius: 10) [15:56:07 -8041.543908] SLOW spr round 43 (radius: 15) [15:57:33 -8040.820135] SLOW spr round 44 (radius: 5) [15:58:56 -8040.820060] SLOW spr round 45 (radius: 10) [16:00:15 -8040.819986] SLOW spr round 46 (radius: 15) [16:01:38 -8040.819914] SLOW spr round 47 (radius: 20) [16:03:25 -8039.530948] SLOW spr round 48 (radius: 5) [16:04:47 -8039.530231] SLOW spr round 49 (radius: 10) [16:06:07 -8039.530156] SLOW spr round 50 (radius: 15) [16:07:31 -8039.530082] SLOW spr round 51 (radius: 20) [16:09:13 -8039.530008] SLOW spr round 52 (radius: 25) [16:11:08 -8039.104036] SLOW spr round 53 (radius: 5) [16:12:30 -8039.103957] SLOW spr round 54 (radius: 10) [16:13:50 -8039.103883] SLOW spr round 55 (radius: 15) [16:15:14 -8039.103808] SLOW spr round 56 (radius: 20) [16:16:57 -8039.103732] SLOW spr round 57 (radius: 25) [16:18:52 -8039.103656] Model parameter optimization (eps = 0.100000) [16:18:59] ML tree search #13, logLikelihood: -8038.983855 [16:18:59 -62103.044019] Initial branch length optimization [16:19:01 -44457.478353] Model parameter optimization (eps = 10.000000) [16:19:25 -43950.843578] AUTODETECT spr round 1 (radius: 5) [16:20:39 -23715.741012] AUTODETECT spr round 2 (radius: 10) [16:21:56 -16324.922757] AUTODETECT spr round 3 (radius: 15) [16:23:24 -12095.553999] AUTODETECT spr round 4 (radius: 20) [16:24:55 -9726.652517] AUTODETECT spr round 5 (radius: 25) [16:26:35 -9182.956372] SPR radius for FAST iterations: 25 (autodetect) [16:26:35 -9182.956372] Model parameter optimization (eps = 3.000000) [16:26:53 -9159.467725] FAST spr round 1 (radius: 25) [16:28:14 -8282.782364] FAST spr round 2 (radius: 25) [16:29:32 -8243.296376] FAST spr round 3 (radius: 25) [16:30:49 -8234.684937] FAST spr round 4 (radius: 25) [16:32:02 -8234.290580] FAST spr round 5 (radius: 25) [16:33:15 -8234.289817] Model parameter optimization (eps = 1.000000) [16:33:22 -8233.773104] SLOW spr round 1 (radius: 5) [16:34:37 -8233.024007] SLOW spr round 2 (radius: 5) [16:35:51 -8233.002202] SLOW spr round 3 (radius: 10) [16:37:10 -8230.532181] SLOW spr round 4 (radius: 5) [16:38:30 -8228.934759] SLOW spr round 5 (radius: 5) [16:39:44 -8228.378719] SLOW spr round 6 (radius: 5) [16:41:00 -8227.421719] SLOW spr round 7 (radius: 5) [16:42:13 -8227.421500] SLOW spr round 8 (radius: 10) [16:43:31 -8227.421461] SLOW spr round 9 (radius: 15) [16:45:02 -8204.439923] SLOW spr round 10 (radius: 5) [16:46:26 -8200.358958] SLOW spr round 11 (radius: 5) [16:47:42 -8200.349376] SLOW spr round 12 (radius: 10) [16:48:58 -8200.101625] SLOW spr round 13 (radius: 5) [16:50:15 -8200.101579] SLOW spr round 14 (radius: 10) [16:51:33 -8200.101536] SLOW spr round 15 (radius: 15) [16:53:04 -7919.375746] SLOW spr round 16 (radius: 5) [16:54:27 -7822.753032] SLOW spr round 17 (radius: 5) [16:55:44 -7765.552943] SLOW spr round 18 (radius: 5) [16:56:59 -7763.303600] SLOW spr round 19 (radius: 5) [16:58:15 -7763.303019] SLOW spr round 20 (radius: 10) [16:59:35 -7759.355990] SLOW spr round 21 (radius: 5) [17:00:52 -7757.278585] SLOW spr round 22 (radius: 5) [17:02:06 -7757.278532] SLOW spr round 23 (radius: 10) [17:03:22 -7757.278485] SLOW spr round 24 (radius: 15) [17:04:48 -7738.295433] SLOW spr round 25 (radius: 5) [17:06:12 -7711.390601] SLOW spr round 26 (radius: 5) [17:07:26 -7711.390527] SLOW spr round 27 (radius: 10) [17:08:43 -7711.143055] SLOW spr round 28 (radius: 5) [17:10:00 -7711.143005] SLOW spr round 29 (radius: 10) [17:11:17 -7711.142956] SLOW spr round 30 (radius: 15) [17:12:44 -7711.142874] SLOW spr round 31 (radius: 20) [17:14:35 -7610.945891] SLOW spr round 32 (radius: 5) [17:15:59 -7595.046810] SLOW spr round 33 (radius: 5) [17:17:14 -7594.208676] SLOW spr round 34 (radius: 5) [17:18:28 -7594.208675] SLOW spr round 35 (radius: 10) [17:19:47 -7583.757852] SLOW spr round 36 (radius: 5) [17:21:04 -7579.367951] SLOW spr round 37 (radius: 5) [17:22:19 -7579.367911] SLOW spr round 38 (radius: 10) [17:23:35 -7575.602057] SLOW spr round 39 (radius: 5) [17:24:54 -7564.328378] SLOW spr round 40 (radius: 5) [17:26:08 -7564.328370] SLOW spr round 41 (radius: 10) [17:27:25 -7564.328331] SLOW spr round 42 (radius: 15) [17:28:51 -7561.217522] SLOW spr round 43 (radius: 5) [17:30:13 -7561.107790] SLOW spr round 44 (radius: 5) [17:31:28 -7561.107735] SLOW spr round 45 (radius: 10) [17:32:46 -7561.107732] SLOW spr round 46 (radius: 15) [17:34:08 -7561.016183] SLOW spr round 47 (radius: 20) [17:35:52 -7552.140260] SLOW spr round 48 (radius: 5) [17:37:16 -7552.140210] SLOW spr round 49 (radius: 10) [17:38:37 -7550.503944] SLOW spr round 50 (radius: 5) [17:39:53 -7550.502631] SLOW spr round 51 (radius: 10) [17:41:12 -7550.502606] SLOW spr round 52 (radius: 15) [17:42:34 -7550.502599] SLOW spr round 53 (radius: 20) [17:44:20 -7549.318540] SLOW spr round 54 (radius: 5) [17:45:43 -7549.318076] SLOW spr round 55 (radius: 10) [17:47:01 -7549.318073] SLOW spr round 56 (radius: 15) [17:48:23 -7549.318068] SLOW spr round 57 (radius: 20) [17:50:10 -7549.318065] SLOW spr round 58 (radius: 25) [17:52:12 -7541.898524] SLOW spr round 59 (radius: 5) [17:53:34 -7535.886606] SLOW spr round 60 (radius: 5) [17:54:49 -7535.886558] SLOW spr round 61 (radius: 10) [17:56:07 -7535.886556] SLOW spr round 62 (radius: 15) [17:57:29 -7535.886554] SLOW spr round 63 (radius: 20) [17:59:14 -7535.886553] SLOW spr round 64 (radius: 25) [18:01:16 -7533.903172] SLOW spr round 65 (radius: 5) [18:02:40 -7533.902420] SLOW spr round 66 (radius: 10) [18:03:59 -7533.902411] SLOW spr round 67 (radius: 15) [18:05:20 -7531.633074] SLOW spr round 68 (radius: 5) [18:06:43 -7504.554923] SLOW spr round 69 (radius: 5) [18:07:56 -7504.554734] SLOW spr round 70 (radius: 10) [18:09:13 -7504.554729] SLOW spr round 71 (radius: 15) [18:10:37 -7504.554728] SLOW spr round 72 (radius: 20) [18:12:22 -7504.554727] SLOW spr round 73 (radius: 25) [18:14:23 -7504.554726] Model parameter optimization (eps = 0.100000) [18:14:34] ML tree search #14, logLikelihood: -7503.812385 [18:14:34 -62050.899185] Initial branch length optimization [18:14:35 -43892.796914] Model parameter optimization (eps = 10.000000) [18:14:57 -43456.761289] AUTODETECT spr round 1 (radius: 5) [18:16:12 -24713.941582] AUTODETECT spr round 2 (radius: 10) [18:17:31 -16047.578779] AUTODETECT spr round 3 (radius: 15) [18:18:54 -12063.754081] AUTODETECT spr round 4 (radius: 20) [18:20:20 -10852.504040] AUTODETECT spr round 5 (radius: 25) [18:21:59 -9949.034394] SPR radius for FAST iterations: 25 (autodetect) [18:21:59 -9949.034394] Model parameter optimization (eps = 3.000000) [18:22:14 -9921.661385] FAST spr round 1 (radius: 25) [18:23:44 -8302.655755] FAST spr round 2 (radius: 25) [18:25:01 -7842.655299] FAST spr round 3 (radius: 25) [18:26:18 -7782.412368] FAST spr round 4 (radius: 25) [18:27:33 -7775.061862] FAST spr round 5 (radius: 25) [18:28:46 -7775.006150] Model parameter optimization (eps = 1.000000) [18:28:57 -7773.535333] SLOW spr round 1 (radius: 5) [18:30:09 -7772.529716] SLOW spr round 2 (radius: 5) [18:31:22 -7764.633161] SLOW spr round 3 (radius: 5) [18:32:36 -7760.137127] SLOW spr round 4 (radius: 5) [18:33:50 -7760.136289] SLOW spr round 5 (radius: 10) [18:35:09 -7726.711219] SLOW spr round 6 (radius: 5) [18:36:27 -7681.205946] SLOW spr round 7 (radius: 5) [18:37:41 -7681.193291] SLOW spr round 8 (radius: 10) [18:38:57 -7681.099714] SLOW spr round 9 (radius: 15) [18:40:10 -7592.462184] SLOW spr round 10 (radius: 5) [18:41:33 -7528.596166] SLOW spr round 11 (radius: 5) [18:42:51 -7521.165316] SLOW spr round 12 (radius: 5) [18:44:07 -7521.048967] SLOW spr round 13 (radius: 5) [18:45:22 -7521.042308] SLOW spr round 14 (radius: 10) [18:46:42 -7520.438542] SLOW spr round 15 (radius: 5) [18:48:00 -7519.808938] SLOW spr round 16 (radius: 5) [18:49:14 -7519.808667] SLOW spr round 17 (radius: 10) [18:50:32 -7519.808487] SLOW spr round 18 (radius: 15) [18:51:59 -7515.019922] SLOW spr round 19 (radius: 5) [18:53:23 -7507.700286] SLOW spr round 20 (radius: 5) [18:54:40 -7507.618046] SLOW spr round 21 (radius: 10) [18:55:59 -7507.617723] SLOW spr round 22 (radius: 15) [18:57:23 -7505.662124] SLOW spr round 23 (radius: 5) [18:58:44 -7505.662059] SLOW spr round 24 (radius: 10) [19:00:02 -7505.328062] SLOW spr round 25 (radius: 5) [19:01:21 -7503.760124] SLOW spr round 26 (radius: 5) [19:02:36 -7503.759964] SLOW spr round 27 (radius: 10) [19:03:55 -7503.759908] SLOW spr round 28 (radius: 15) [19:05:18 -7503.759856] SLOW spr round 29 (radius: 20) [19:07:10 -7503.759802] SLOW spr round 30 (radius: 25) [19:09:16 -7503.759750] Model parameter optimization (eps = 0.100000) [19:09:26] ML tree search #15, logLikelihood: -7503.209320 [19:09:26 -61073.391903] Initial branch length optimization [19:09:27 -43892.081108] Model parameter optimization (eps = 10.000000) [19:09:45 -43427.369968] AUTODETECT spr round 1 (radius: 5) [19:11:01 -23974.829293] AUTODETECT spr round 2 (radius: 10) [19:12:18 -15958.353405] AUTODETECT spr round 3 (radius: 15) [19:13:43 -12074.078177] AUTODETECT spr round 4 (radius: 20) [19:15:12 -11088.020123] AUTODETECT spr round 5 (radius: 25) [19:16:52 -10667.978780] SPR radius for FAST iterations: 25 (autodetect) [19:16:52 -10667.978780] Model parameter optimization (eps = 3.000000) [19:17:08 -10644.627765] FAST spr round 1 (radius: 25) [19:18:35 -9080.171109] FAST spr round 2 (radius: 25) [19:19:54 -8841.625441] FAST spr round 3 (radius: 25) [19:21:12 -8743.054753] FAST spr round 4 (radius: 25) [19:22:28 -8742.159793] FAST spr round 5 (radius: 25) [19:23:41 -8740.721695] FAST spr round 6 (radius: 25) [19:24:55 -8740.720811] Model parameter optimization (eps = 1.000000) [19:25:06 -8738.420454] SLOW spr round 1 (radius: 5) [19:26:22 -8734.832178] SLOW spr round 2 (radius: 5) [19:27:38 -8722.250341] SLOW spr round 3 (radius: 5) [19:28:51 -8722.248437] SLOW spr round 4 (radius: 10) [19:30:11 -8713.095782] SLOW spr round 5 (radius: 5) [19:31:31 -8701.620663] SLOW spr round 6 (radius: 5) [19:32:47 -8700.715509] SLOW spr round 7 (radius: 5) [19:34:02 -8700.713896] SLOW spr round 8 (radius: 10) [19:35:21 -8573.304065] SLOW spr round 9 (radius: 5) [19:36:40 -8559.235018] SLOW spr round 10 (radius: 5) [19:37:53 -8559.226329] SLOW spr round 11 (radius: 10) [19:39:09 -8559.226063] SLOW spr round 12 (radius: 15) [19:40:39 -8559.225981] SLOW spr round 13 (radius: 20) [19:42:27 -8548.261806] SLOW spr round 14 (radius: 5) [19:43:51 -8487.162562] SLOW spr round 15 (radius: 5) [19:45:08 -8478.073651] SLOW spr round 16 (radius: 5) [19:46:20 -8476.508658] SLOW spr round 17 (radius: 5) [19:47:33 -8476.508405] SLOW spr round 18 (radius: 10) [19:48:50 -8476.508348] SLOW spr round 19 (radius: 15) [19:50:19 -8476.508291] SLOW spr round 20 (radius: 20) [19:52:05 -8476.508233] SLOW spr round 21 (radius: 25) [19:54:15 -8467.387909] SLOW spr round 22 (radius: 5) [19:55:38 -8467.386612] SLOW spr round 23 (radius: 10) [19:56:57 -8467.190442] SLOW spr round 24 (radius: 5) [19:58:13 -8467.190363] SLOW spr round 25 (radius: 10) [19:59:29 -8467.190303] SLOW spr round 26 (radius: 15) [20:00:58 -8467.190244] SLOW spr round 27 (radius: 20) [20:02:46 -8467.190185] SLOW spr round 28 (radius: 25) [20:04:55 -8467.190125] Model parameter optimization (eps = 0.100000) [20:05:02] ML tree search #16, logLikelihood: -8467.081223 [20:05:02 -61552.758342] Initial branch length optimization [20:05:03 -43995.564224] Model parameter optimization (eps = 10.000000) [20:05:24 -43499.624966] AUTODETECT spr round 1 (radius: 5) [20:06:39 -24010.615581] AUTODETECT spr round 2 (radius: 10) [20:07:56 -15336.111329] AUTODETECT spr round 3 (radius: 15) [20:09:20 -12090.217342] AUTODETECT spr round 4 (radius: 20) [20:10:50 -10916.183988] AUTODETECT spr round 5 (radius: 25) [20:12:23 -9584.709525] SPR radius for FAST iterations: 25 (autodetect) [20:12:23 -9584.709525] Model parameter optimization (eps = 3.000000) [20:12:39 -9567.888828] FAST spr round 1 (radius: 25) [20:14:07 -8068.676192] FAST spr round 2 (radius: 25) [20:15:27 -7724.451175] FAST spr round 3 (radius: 25) [20:16:47 -7710.946374] FAST spr round 4 (radius: 25) [20:18:03 -7710.945331] Model parameter optimization (eps = 1.000000) [20:18:14 -7708.224869] SLOW spr round 1 (radius: 5) [20:19:29 -7703.857438] SLOW spr round 2 (radius: 5) [20:20:44 -7702.408529] SLOW spr round 3 (radius: 5) [20:22:00 -7702.185297] SLOW spr round 4 (radius: 5) [20:23:16 -7702.183927] SLOW spr round 5 (radius: 10) [20:24:36 -7626.521796] SLOW spr round 6 (radius: 5) [20:25:54 -7603.759719] SLOW spr round 7 (radius: 5) [20:27:09 -7603.013428] SLOW spr round 8 (radius: 5) [20:28:25 -7602.891239] SLOW spr round 9 (radius: 5) [20:29:41 -7602.889137] SLOW spr round 10 (radius: 10) [20:31:02 -7602.887891] SLOW spr round 11 (radius: 15) [20:32:28 -7598.390844] SLOW spr round 12 (radius: 5) [20:33:50 -7598.389190] SLOW spr round 13 (radius: 10) [20:35:13 -7587.303535] SLOW spr round 14 (radius: 5) [20:36:29 -7587.303414] SLOW spr round 15 (radius: 10) [20:37:49 -7587.303326] SLOW spr round 16 (radius: 15) [20:39:14 -7586.805796] SLOW spr round 17 (radius: 5) [20:40:36 -7586.805686] SLOW spr round 18 (radius: 10) [20:41:59 -7586.805585] SLOW spr round 19 (radius: 15) [20:43:23 -7586.480464] SLOW spr round 20 (radius: 5) [20:44:43 -7586.480439] SLOW spr round 21 (radius: 10) [20:46:04 -7586.304770] SLOW spr round 22 (radius: 5) [20:47:20 -7586.304138] SLOW spr round 23 (radius: 10) [20:48:39 -7586.303991] SLOW spr round 24 (radius: 15) [20:50:01 -7586.303953] SLOW spr round 25 (radius: 20) [20:51:45 -7518.563095] SLOW spr round 26 (radius: 5) [20:53:09 -7430.886321] SLOW spr round 27 (radius: 5) [20:54:25 -7413.089870] SLOW spr round 28 (radius: 5) [20:55:38 -7413.070420] SLOW spr round 29 (radius: 10) [20:56:56 -7413.070346] SLOW spr round 30 (radius: 15) [20:58:19 -7411.556639] SLOW spr round 31 (radius: 5) [20:59:42 -7406.171766] SLOW spr round 32 (radius: 5) [21:00:58 -7405.597678] SLOW spr round 33 (radius: 5) [21:02:11 -7405.596888] SLOW spr round 34 (radius: 10) [21:03:28 -7405.596830] SLOW spr round 35 (radius: 15) [21:04:50 -7405.596780] SLOW spr round 36 (radius: 20) [21:06:38 -7397.156677] SLOW spr round 37 (radius: 5) [21:07:59 -7397.156626] SLOW spr round 38 (radius: 10) [21:09:19 -7397.156571] SLOW spr round 39 (radius: 15) [21:10:41 -7397.156520] SLOW spr round 40 (radius: 20) [21:12:28 -7397.156469] SLOW spr round 41 (radius: 25) [21:14:40 -7396.282114] SLOW spr round 42 (radius: 5) [21:16:02 -7396.282057] SLOW spr round 43 (radius: 10) [21:17:21 -7396.282001] SLOW spr round 44 (radius: 15) [21:18:43 -7396.281949] SLOW spr round 45 (radius: 20) [21:20:32 -7396.281897] SLOW spr round 46 (radius: 25) [21:22:43 -7396.281845] Model parameter optimization (eps = 0.100000) [21:22:52] ML tree search #17, logLikelihood: -7396.082921 [21:22:52 -62018.822477] Initial branch length optimization [21:22:53 -43986.207619] Model parameter optimization (eps = 10.000000) [21:23:13 -43575.665146] AUTODETECT spr round 1 (radius: 5) [21:24:25 -23612.423177] AUTODETECT spr round 2 (radius: 10) [21:25:43 -15635.835819] AUTODETECT spr round 3 (radius: 15) [21:27:07 -12238.003423] AUTODETECT spr round 4 (radius: 20) [21:28:39 -10664.914178] AUTODETECT spr round 5 (radius: 25) [21:30:10 -9960.721331] SPR radius for FAST iterations: 25 (autodetect) [21:30:10 -9960.721331] Model parameter optimization (eps = 3.000000) [21:30:28 -9940.626114] FAST spr round 1 (radius: 25) [21:31:53 -8844.195051] FAST spr round 2 (radius: 25) [21:33:08 -8466.502393] FAST spr round 3 (radius: 25) [21:34:18 -8132.001207] FAST spr round 4 (radius: 25) [21:35:30 -7981.111475] FAST spr round 5 (radius: 25) [21:36:43 -7961.290196] FAST spr round 6 (radius: 25) [21:37:55 -7951.169176] FAST spr round 7 (radius: 25) [21:39:07 -7942.323579] FAST spr round 8 (radius: 25) [21:40:17 -7942.311954] Model parameter optimization (eps = 1.000000) [21:40:22 -7941.694099] SLOW spr round 1 (radius: 5) [21:41:35 -7938.033389] SLOW spr round 2 (radius: 5) [21:42:47 -7937.855133] SLOW spr round 3 (radius: 5) [21:43:58 -7937.854920] SLOW spr round 4 (radius: 10) [21:45:16 -7913.659955] SLOW spr round 5 (radius: 5) [21:46:32 -7907.268335] SLOW spr round 6 (radius: 5) [21:47:44 -7907.268187] SLOW spr round 7 (radius: 10) [21:48:50 -7904.383303] SLOW spr round 8 (radius: 5) [21:50:01 -7904.379893] SLOW spr round 9 (radius: 10) [21:51:18 -7904.364165] SLOW spr round 10 (radius: 15) [21:52:44 -7899.259881] SLOW spr round 11 (radius: 5) [21:54:07 -7862.877007] SLOW spr round 12 (radius: 5) [21:55:25 -7853.614504] SLOW spr round 13 (radius: 5) [21:56:40 -7850.852407] SLOW spr round 14 (radius: 5) [21:57:53 -7850.851667] SLOW spr round 15 (radius: 10) [21:59:11 -7850.344493] SLOW spr round 16 (radius: 5) [22:00:28 -7849.292405] SLOW spr round 17 (radius: 5) [22:01:42 -7849.292327] SLOW spr round 18 (radius: 10) [22:03:02 -7849.292266] SLOW spr round 19 (radius: 15) [22:04:28 -7821.766126] SLOW spr round 20 (radius: 5) [22:05:48 -7821.765977] SLOW spr round 21 (radius: 10) [22:07:07 -7821.450724] SLOW spr round 22 (radius: 5) [22:08:20 -7821.450667] SLOW spr round 23 (radius: 10) [22:09:38 -7821.450613] SLOW spr round 24 (radius: 15) [22:11:03 -7821.450558] SLOW spr round 25 (radius: 20) [22:12:57 -7762.059046] SLOW spr round 26 (radius: 5) [22:14:20 -7681.582044] SLOW spr round 27 (radius: 5) [22:15:35 -7681.579684] SLOW spr round 28 (radius: 10) [22:16:50 -7681.579013] SLOW spr round 29 (radius: 15) [22:18:15 -7680.608438] SLOW spr round 30 (radius: 5) [22:19:38 -7675.171335] SLOW spr round 31 (radius: 5) [22:20:52 -7674.632326] SLOW spr round 32 (radius: 5) [22:22:04 -7674.621914] SLOW spr round 33 (radius: 10) [22:23:20 -7674.621904] SLOW spr round 34 (radius: 15) [22:24:43 -7674.621903] SLOW spr round 35 (radius: 20) [22:26:38 -7673.530180] SLOW spr round 36 (radius: 5) [22:28:00 -7673.530122] SLOW spr round 37 (radius: 10) [22:29:19 -7673.530120] SLOW spr round 38 (radius: 15) [22:30:42 -7673.530120] SLOW spr round 39 (radius: 20) [22:32:33 -7673.530120] SLOW spr round 40 (radius: 25) [22:34:45 -7672.545036] SLOW spr round 41 (radius: 5) [22:36:08 -7661.930855] SLOW spr round 42 (radius: 5) [22:37:21 -7661.930855] SLOW spr round 43 (radius: 10) [22:38:38 -7658.457772] SLOW spr round 44 (radius: 5) [22:39:52 -7658.457772] SLOW spr round 45 (radius: 10) [22:41:08 -7658.457772] SLOW spr round 46 (radius: 15) [22:42:33 -7658.457772] SLOW spr round 47 (radius: 20) [22:44:26 -7658.457772] SLOW spr round 48 (radius: 25) [22:46:37 -7658.457772] Model parameter optimization (eps = 0.100000) [22:46:41] ML tree search #18, logLikelihood: -7658.395286 [22:46:41 -63327.339251] Initial branch length optimization [22:46:43 -44926.704356] Model parameter optimization (eps = 10.000000) [22:47:06 -44475.019235] AUTODETECT spr round 1 (radius: 5) [22:48:20 -23618.785953] AUTODETECT spr round 2 (radius: 10) [22:49:38 -16535.456720] AUTODETECT spr round 3 (radius: 15) [22:51:03 -12705.511057] AUTODETECT spr round 4 (radius: 20) [22:52:30 -11410.490535] AUTODETECT spr round 5 (radius: 25) [22:54:01 -10797.221917] SPR radius for FAST iterations: 25 (autodetect) [22:54:01 -10797.221917] Model parameter optimization (eps = 3.000000) [22:54:19 -10772.209102] FAST spr round 1 (radius: 25) [22:55:45 -9264.223556] FAST spr round 2 (radius: 25) [22:57:05 -9053.825333] FAST spr round 3 (radius: 25) [22:58:24 -9018.900099] FAST spr round 4 (radius: 25) [22:59:40 -9015.725775] FAST spr round 5 (radius: 25) [23:00:54 -9015.723919] Model parameter optimization (eps = 1.000000) [23:01:01 -9015.143500] SLOW spr round 1 (radius: 5) [23:02:16 -9013.167329] SLOW spr round 2 (radius: 5) [23:03:30 -9013.164531] SLOW spr round 3 (radius: 10) [23:04:51 -9011.295339] SLOW spr round 4 (radius: 5) [23:06:09 -9011.295227] SLOW spr round 5 (radius: 10) [23:07:27 -9010.833699] SLOW spr round 6 (radius: 5) [23:08:45 -9010.830860] SLOW spr round 7 (radius: 10) [23:10:03 -9010.830491] SLOW spr round 8 (radius: 15) [23:11:36 -9009.539114] SLOW spr round 9 (radius: 5) [23:12:59 -9009.538973] SLOW spr round 10 (radius: 10) [23:14:18 -9008.276383] SLOW spr round 11 (radius: 5) [23:15:35 -9008.274277] SLOW spr round 12 (radius: 10) [23:16:52 -9008.273036] SLOW spr round 13 (radius: 15) [23:18:25 -8989.404477] SLOW spr round 14 (radius: 5) [23:19:47 -8985.091826] SLOW spr round 15 (radius: 5) [23:21:01 -8984.377904] SLOW spr round 16 (radius: 5) [23:22:14 -8984.377742] SLOW spr round 17 (radius: 10) [23:23:31 -8984.377720] SLOW spr round 18 (radius: 15) [23:25:03 -8980.265754] SLOW spr round 19 (radius: 5) [23:26:24 -8980.265746] SLOW spr round 20 (radius: 10) [23:27:42 -8980.265742] SLOW spr round 21 (radius: 15) [23:29:13 -8980.265739] SLOW spr round 22 (radius: 20) [23:31:13 -8977.157853] SLOW spr round 23 (radius: 5) [23:32:38 -8975.925970] SLOW spr round 24 (radius: 5) [23:33:53 -8975.925520] SLOW spr round 25 (radius: 10) [23:35:12 -8975.925496] SLOW spr round 26 (radius: 15) [23:36:41 -8975.925461] SLOW spr round 27 (radius: 20) [23:38:43 -8975.925456] SLOW spr round 28 (radius: 25) [23:41:08 -8972.301294] SLOW spr round 29 (radius: 5) [23:42:30 -8972.268184] SLOW spr round 30 (radius: 10) [23:43:50 -8964.973232] SLOW spr round 31 (radius: 5) [23:45:08 -8964.973025] SLOW spr round 32 (radius: 10) [23:46:26 -8964.973024] SLOW spr round 33 (radius: 15) [23:47:59 -8961.533148] SLOW spr round 34 (radius: 5) [23:49:19 -8961.522820] SLOW spr round 35 (radius: 10) [23:50:39 -8961.522820] SLOW spr round 36 (radius: 15) [23:52:10 -8961.522814] SLOW spr round 37 (radius: 20) [23:54:11 -8961.522813] SLOW spr round 38 (radius: 25) [23:56:42 -8961.522812] Model parameter optimization (eps = 0.100000) [23:56:51] ML tree search #19, logLikelihood: -8961.292518 [23:56:51 -61909.425023] Initial branch length optimization [23:56:53 -44443.897006] Model parameter optimization (eps = 10.000000) [23:57:13 -43944.129547] AUTODETECT spr round 1 (radius: 5) [23:58:28 -23839.931359] AUTODETECT spr round 2 (radius: 10) [23:59:45 -16018.857365] AUTODETECT spr round 3 (radius: 15) [24:01:08 -13149.595004] AUTODETECT spr round 4 (radius: 20) [24:02:39 -11659.946768] AUTODETECT spr round 5 (radius: 25) [24:04:18 -9765.209157] SPR radius for FAST iterations: 25 (autodetect) [24:04:18 -9765.209157] Model parameter optimization (eps = 3.000000) [24:04:34 -9751.281154] FAST spr round 1 (radius: 25) [24:05:58 -8140.659991] FAST spr round 2 (radius: 25) [24:07:15 -7857.691100] FAST spr round 3 (radius: 25) [24:08:35 -7822.433514] FAST spr round 4 (radius: 25) [24:09:50 -7822.273356] FAST spr round 5 (radius: 25) [24:11:04 -7822.273052] Model parameter optimization (eps = 1.000000) [24:11:15 -7820.444981] SLOW spr round 1 (radius: 5) [24:12:29 -7817.411270] SLOW spr round 2 (radius: 5) [24:13:42 -7816.623511] SLOW spr round 3 (radius: 5) [24:14:55 -7816.623153] SLOW spr round 4 (radius: 10) [24:16:15 -7719.416003] SLOW spr round 5 (radius: 5) [24:17:33 -7707.816480] SLOW spr round 6 (radius: 5) [24:18:46 -7707.814606] SLOW spr round 7 (radius: 10) [24:20:03 -7707.813275] SLOW spr round 8 (radius: 15) [24:21:27 -7696.839499] SLOW spr round 9 (radius: 5) [24:22:48 -7696.838001] SLOW spr round 10 (radius: 10) [24:24:07 -7696.837572] SLOW spr round 11 (radius: 15) [24:25:30 -7693.019203] SLOW spr round 12 (radius: 5) [24:26:50 -7693.019041] SLOW spr round 13 (radius: 10) [24:28:08 -7693.018911] SLOW spr round 14 (radius: 15) [24:29:32 -7693.018810] SLOW spr round 15 (radius: 20) [24:31:21 -7688.518179] SLOW spr round 16 (radius: 5) [24:32:43 -7597.909222] SLOW spr round 17 (radius: 5) [24:33:58 -7594.493612] SLOW spr round 18 (radius: 5) [24:35:14 -7594.237644] SLOW spr round 19 (radius: 5) [24:36:27 -7594.236737] SLOW spr round 20 (radius: 10) [24:37:43 -7590.798953] SLOW spr round 21 (radius: 5) [24:38:58 -7589.365231] SLOW spr round 22 (radius: 5) [24:40:10 -7589.292574] SLOW spr round 23 (radius: 10) [24:41:26 -7589.292306] SLOW spr round 24 (radius: 15) [24:42:47 -7587.969596] SLOW spr round 25 (radius: 5) [24:44:05 -7587.969540] SLOW spr round 26 (radius: 10) [24:45:22 -7587.969488] SLOW spr round 27 (radius: 15) [24:46:44 -7587.969436] SLOW spr round 28 (radius: 20) [24:48:35 -7522.871426] SLOW spr round 29 (radius: 5) [24:49:57 -7509.238561] SLOW spr round 30 (radius: 5) [24:51:11 -7509.238176] SLOW spr round 31 (radius: 10) [24:52:20 -7509.238092] SLOW spr round 32 (radius: 15) [24:53:39 -7509.238090] SLOW spr round 33 (radius: 20) [24:55:27 -7509.082778] SLOW spr round 34 (radius: 5) [24:56:48 -7509.082777] SLOW spr round 35 (radius: 10) [24:58:07 -7509.082777] SLOW spr round 36 (radius: 15) [24:59:30 -7509.082777] SLOW spr round 37 (radius: 20) [25:01:18 -7509.082777] SLOW spr round 38 (radius: 25) [25:03:25 -7500.526413] SLOW spr round 39 (radius: 5) [25:04:46 -7500.525770] SLOW spr round 40 (radius: 10) [25:06:05 -7497.743485] SLOW spr round 41 (radius: 5) [25:07:19 -7497.743413] SLOW spr round 42 (radius: 10) [25:08:36 -7497.743413] SLOW spr round 43 (radius: 15) [25:09:58 -7497.743413] SLOW spr round 44 (radius: 20) [25:11:47 -7497.743413] SLOW spr round 45 (radius: 25) [25:13:56 -7497.743413] Model parameter optimization (eps = 0.100000) [25:14:17] ML tree search #20, logLikelihood: -7496.961241 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.196415,0.460139) (0.183027,0.897160) (0.423812,0.678925) (0.196746,2.326255) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -7396.082921 AIC score: 18642.165841 / AICc score: 7433742.165841 / BIC score: 22540.967846 Free parameters (model + branch lengths): 1925 WARNING: Number of free parameters (K=1925) is larger than alignment size (n=56). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P40424/3_mltree/P40424.raxml.log Analysis started: 06-Jul-2021 03:55:38 / finished: 07-Jul-2021 05:09:56 Elapsed time: 90857.730 seconds Consumed energy: 7527.450 Wh (= 38 km in an electric car, or 188 km with an e-scooter!)