RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 14:52:24 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/2_msa/P39210_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/3_mltree/P39210.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622634744 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/2_msa/P39210_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 176 sites WARNING: Sequences tr_A0A2I3G7I2_A0A2I3G7I2_NOMLE_61853 and tr_A0A2J8VMZ1_A0A2J8VMZ1_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3G7I2_A0A2I3G7I2_NOMLE_61853 and sp_P39210_MPV17_HUMAN_9606 are exactly identical! WARNING: Sequences tr_J3K4T0_J3K4T0_COCIM_246410 and tr_A0A0J7B910_A0A0J7B910_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6Q7V2_B6Q7V2_TALMQ_441960 and tr_A0A093V738_A0A093V738_TALMA_1077442 are exactly identical! WARNING: Sequences sp_Q7SCY7_SYM1_NEUCR_367110 and tr_G4U848_G4U848_NEUT9_510952 are exactly identical! WARNING: Sequences tr_A0A179V0M6_A0A179V0M6_BLAGS_559298 and tr_C5GRX1_C5GRX1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_K7CVN4_K7CVN4_PANTR_9598 and tr_A0A2R9AZ76_A0A2R9AZ76_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9F1V2_F9F1V2_FUSOF_660025 and tr_A0A0D2XAZ6_A0A0D2XAZ6_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F1V2_F9F1V2_FUSOF_660025 and tr_N4TQS6_N4TQS6_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F1V2_F9F1V2_FUSOF_660025 and tr_X0CZL4_X0CZL4_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F1V2_F9F1V2_FUSOF_660025 and tr_A0A2H3T810_A0A2H3T810_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F1V2_F9F1V2_FUSOF_660025 and tr_A0A2H3HVD0_A0A2H3HVD0_FUSOX_327505 are exactly identical! WARNING: Sequences tr_E9ELW3_E9ELW3_METRA_655844 and tr_A0A0B4HVB7_A0A0B4HVB7_METMF_1276143 are exactly identical! WARNING: Sequences tr_E4V3D0_E4V3D0_ARTGP_535722 and tr_F2Q3V3_F2Q3V3_TRIEC_559882 are exactly identical! WARNING: Sequences tr_E4V3D0_E4V3D0_ARTGP_535722 and tr_A0A059JDV9_A0A059JDV9_9EURO_1215338 are exactly identical! WARNING: Sequences tr_J5JA89_J5JA89_BEAB2_655819 and tr_A0A0A2VUZ3_A0A0A2VUZ3_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J5JA89_J5JA89_BEAB2_655819 and tr_A0A166X2K6_A0A166X2K6_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J5JA89_J5JA89_BEAB2_655819 and tr_A0A2N6NEK3_A0A2N6NEK3_BEABA_176275 are exactly identical! WARNING: Sequences tr_G9P9L6_G9P9L6_HYPAI_452589 and tr_A0A2K0TL96_A0A2K0TL96_9HYPO_398673 are exactly identical! WARNING: Sequences sp_Q2TXA2_SYM1_ASPOR_510516 and tr_A0A1S9DEQ8_A0A1S9DEQ8_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0E0GVA9_A0A0E0GVA9_ORYNI_4536 and tr_I1QXB8_I1QXB8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GVA9_A0A0E0GVA9_ORYNI_4536 and tr_A0A0E0R3Q1_A0A0E0R3Q1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GVA9_A0A0E0GVA9_ORYNI_4536 and tr_A0A0D3HHR8_A0A0D3HHR8_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GVA9_A0A0E0GVA9_ORYNI_4536 and tr_A0A0P0XYD9_A0A0P0XYD9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A2QTL3_A2QTL3_ASPNC_425011 and tr_A0A319ANQ3_A0A319ANQ3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XP56_G7XP56_ASPKW_1033177 and tr_A0A317UKR9_A0A317UKR9_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XW94_G7XW94_ASPKW_1033177 and tr_A0A1L9NH78_A0A1L9NH78_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XW94_G7XW94_ASPKW_1033177 and tr_A0A317VEQ2_A0A317VEQ2_9EURO_1448314 are exactly identical! WARNING: Sequences tr_B8AAZ9_B8AAZ9_ORYSI_39946 and tr_Q8W0A7_Q8W0A7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8B9M9_B8B9M9_ORYSI_39946 and tr_Q6Z1N7_Q6Z1N7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4PB70_F4PB70_BATDJ_684364 and tr_A0A177WDV2_A0A177WDV2_BATDE_403673 are exactly identical! WARNING: Sequences tr_I1NLI6_I1NLI6_ORYGL_4538 and tr_A0A0E0BZD7_A0A0E0BZD7_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1NLI6_I1NLI6_ORYGL_4538 and tr_A0A0D3ELB8_A0A0D3ELB8_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1NLI6_I1NLI6_ORYGL_4538 and tr_A0A0D9Y5J4_A0A0D9Y5J4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1R3N7_I1R3N7_ORYGL_4538 and tr_A0A0E0RD81_A0A0E0RD81_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1R3N7_I1R3N7_ORYGL_4538 and tr_B9GBN8_B9GBN8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G2XZQ4_G2XZQ4_BOTF4_999810 and tr_M7V0X8_M7V0X8_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_G0RMW4_G0RMW4_HYPJQ_431241 and tr_A0A2T4BW84_A0A2T4BW84_TRILO_983965 are exactly identical! WARNING: Sequences tr_G0RMW4_G0RMW4_HYPJQ_431241 and tr_A0A2T4BG08_A0A2T4BG08_9HYPO_58853 are exactly identical! WARNING: Sequences tr_W7LCW2_W7LCW2_GIBM7_334819 and tr_A0A2K0V9T3_A0A2K0V9T3_GIBNY_42673 are exactly identical! WARNING: Sequences tr_A0A287DZD4_A0A287DZD4_HORVV_112509 and tr_A0A3B6LJX1_A0A3B6LJX1_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4DEY7_M4DEY7_BRARP_51351 and tr_A0A0D3D501_A0A0D3D501_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V2WYD2_V2WYD2_MONRO_1381753 and tr_A0A0W0FJ09_A0A0W0FJ09_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2Q4U2_W2Q4U2_PHYPN_761204 and tr_A0A0W8CBS0_A0A0W8CBS0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RIT1_W2RIT1_PHYPN_761204 and tr_A0A0W8DVA2_A0A0W8DVA2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RIT1_W2RIT1_PHYPN_761204 and tr_W2M1B1_W2M1B1_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A067ECE3_A0A067ECE3_CITSI_2711 and tr_V4TV37_V4TV37_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GWD3_A0A067GWD3_CITSI_2711 and tr_V4TTI4_V4TTI4_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GWD3_A0A067GWD3_CITSI_2711 and tr_A0A2H5P7B5_A0A2H5P7B5_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A096NH61_A0A096NH61_PAPAN_9555 and tr_A0A2K6E841_A0A2K6E841_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NH61_A0A096NH61_PAPAN_9555 and tr_A0A2K5XSE2_A0A2K5XSE2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A078HG95_A0A078HG95_BRANA_3708 and tr_A0A0D3EDZ5_A0A0D3EDZ5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A094H5V3_A0A094H5V3_9PEZI_1420912 and tr_A0A2P6FGX8_A0A2P6FGX8_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0A0LF15_A0A0A0LF15_CUCSA_3659 and tr_A0A1S3C7P9_A0A1S3C7P9_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0D2U7R6_A0A0D2U7R6_GOSRA_29730 and tr_A0A1U8IX48_A0A1U8IX48_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2UES0_A0A0D2UES0_GOSRA_29730 and tr_A0A1U8JI58_A0A1U8JI58_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F0IKW3_A0A0F0IKW3_ASPPU_1403190 and tr_A0A0L1IXK0_A0A0L1IXK0_ASPNO_1509407 are exactly identical! WARNING: Sequences tr_A0A0F0IKW3_A0A0F0IKW3_ASPPU_1403190 and tr_A0A2G7FRR3_A0A2G7FRR3_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0F4G4J9_A0A0F4G4J9_9PEZI_1047168 and tr_A0A1X7RSZ3_A0A1X7RSZ3_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0F8XDK9_A0A0F8XDK9_9EURO_308745 and tr_A0A2T5M0Q2_A0A2T5M0Q2_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0S7DSW2_A0A0S7DSW2_9EURO_293939 and tr_A0A2I1BYD1_A0A2I1BYD1_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A0A0L9T9D9_A0A0L9T9D9_PHAAN_3914 and tr_A0A1S3VW70_A0A1S3VW70_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0V1CU40_A0A0V1CU40_TRIBR_45882 and tr_A0A0V0UUM3_A0A0V0UUM3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CU40_A0A0V1CU40_TRIBR_45882 and tr_A0A0V1PCU5_A0A0V1PCU5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CU40_A0A0V1CU40_TRIBR_45882 and tr_A0A0V0UDI2_A0A0V0UDI2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WV93_A0A0V0WV93_9BILA_92179 and tr_A0A0V1LBE9_A0A0V1LBE9_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1LSL8_A0A0V1LSL8_9BILA_6335 and tr_A0A0V0U0X6_A0A0V0U0X6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A101MAW3_A0A101MAW3_9EURO_48697 and tr_A0A1V6NCJ1_A0A1V6NCJ1_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A100ILU4_A0A100ILU4_ASPNG_5061 and tr_A0A1L9NFP2_A0A1L9NFP2_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A1S3XHA3_A0A1S3XHA3_TOBAC_4097 and tr_A0A1J6IJ40_A0A1J6IJ40_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3XHA3_A0A1S3XHA3_TOBAC_4097 and tr_A0A1U7WXZ0_A0A1U7WXZ0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4DNX6_A0A1S4DNX6_TOBAC_4097 and tr_A0A1U7X231_A0A1U7X231_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1V8U7L5_A0A1V8U7L5_9PEZI_1974281 and tr_A0A1V8TBT1_A0A1V8TBT1_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8U7L5_A0A1V8U7L5_9PEZI_1974281 and tr_A0A1V8TN24_A0A1V8TN24_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2D0Q404_A0A2D0Q404_ICTPU_7998 and tr_A0A2D0Q4X4_A0A2D0Q4X4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8ETT7_A0A1U8ETT7_CAPAN_4072 and tr_A0A2G3BBX0_A0A2G3BBX0_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2V5HU79_A0A2V5HU79_9EURO_1450541 and tr_A0A2V5HCM3_A0A2V5HCM3_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 77 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.reduced.phy Alignment comprises 1 partitions and 176 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 176 Gaps: 7.87 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/3_mltree/P39210.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 44 / 3520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -102407.295317 [00:00:00 -102407.295317] Initial branch length optimization [00:00:00 -102109.443236] Model parameter optimization (eps = 0.100000) [00:00:34] Tree #1, final logLikelihood: -101543.806195 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.217815,0.523898) (0.289843,0.697710) (0.402283,1.193640) (0.090059,2.259398) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P39210/4_raxmlng_ancestral/P39210.raxml.log Analysis started: 02-Jun-2021 14:52:24 / finished: 02-Jun-2021 14:53:00 Elapsed time: 35.772 seconds