RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 01:30:59 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/2_msa/P38398_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/3_mltree/P38398.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622673059 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/2_msa/P38398_nogap_msa.fasta [00:00:00] Loaded alignment with 886 taxa and 1863 sites WARNING: Sequences sp_Q5ZIR9_RN185_CHICK_9031 and tr_G1N8S3_G1N8S3_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q5ZIR9_RN185_CHICK_9031 and tr_A0A091UZ38_A0A091UZ38_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q5ZIR9_RN185_CHICK_9031 and tr_A0A2I0LZA1_A0A2I0LZA1_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q5ZIR9_RN185_CHICK_9031 and tr_A0A091J7V5_A0A091J7V5_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q5ZIR9_RN185_CHICK_9031 and tr_A0A1V4JRC8_A0A1V4JRC8_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q91YT2_RN185_MOUSE_10090 and sp_Q568Y3_RN185_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XTL0_M3XTL0_MUSPF_9669 and tr_E2R9I5_E2R9I5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XTL0_M3XTL0_MUSPF_9669 and tr_G1LWQ1_G1LWQ1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XTL0_M3XTL0_MUSPF_9669 and tr_A0A2Y9JTN0_A0A2Y9JTN0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XTL0_M3XTL0_MUSPF_9669 and tr_A0A384DFL9_A0A384DFL9_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_H2PBP9_H2PBP9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and sp_Q14527_HLTF_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_G7NZN6_G7NZN6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_A0A096NP96_A0A096NP96_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_A0A0D9RGB3_A0A0D9RGB3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_A0A2K5NZ14_A0A2K5NZ14_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_A0A2K6BXG8_A0A2K6BXG8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QQV6_G1QQV6_NOMLE_61853 and tr_A0A2K5Y2J6_A0A2K5Y2J6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_G1PDS3_G1PDS3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_G3S997_G3S997_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_F1PCX5_F1PCX5_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and sp_Q96GF1_RN185_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_F2Z4Y3_F2Z4Y3_PIG_9823 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_D2H206_D2H206_AILME_9646 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_G7PF83_G7PF83_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A4IFC2_A4IFC2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A337SFW9_A0A337SFW9_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A096NJM1_A0A096NJM1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A0D9R8T5_A0A0D9R8T5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A1U7TKV8_A0A1U7TKV8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2K5P7G4_A0A2K5P7G4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2K6DSW8_A0A2K6DSW8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2R9CA07_A0A2R9CA07_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2U3V5G5_A0A2U3V5G5_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2U3VX33_A0A2U3VX33_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2U3XQ39_A0A2U3XQ39_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2Y9KWZ7_A0A2Y9KWZ7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A2Y9FTF2_A0A2Y9FTF2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1QWA2_G1QWA2_NOMLE_61853 and tr_A0A384DPV9_A0A384DPV9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A7RJT0_A7RJT0_NEMVE_45351 and tr_A7SZ68_A7SZ68_NEMVE_45351 are exactly identical! WARNING: Sequences tr_H2R3U6_H2R3U6_PANTR_9598 and tr_A0A2R9ADQ8_A0A2R9ADQ8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6REQ9_F6REQ9_MONDO_13616 and tr_G3VPG0_G3VPG0_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6QU77_F6QU77_HORSE_9796 and tr_A0A1S3F1C7_A0A1S3F1C7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_W5P578_W5P578_SHEEP_9940 and tr_F1MLM2_F1MLM2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NVS4_A0A158NVS4_ATTCE_12957 and tr_F4WNR4_F4WNR4_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NVS4_A0A158NVS4_ATTCE_12957 and tr_A0A195ECG0_A0A195ECG0_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NVS4_A0A158NVS4_ATTCE_12957 and tr_A0A195B8N1_A0A195B8N1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NVS4_A0A158NVS4_ATTCE_12957 and tr_A0A195FW07_A0A195FW07_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A0E0FTM3_A0A0E0FTM3_ORYNI_4536 and tr_A2WVF2_A2WVF2_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0FTM3_A0A0E0FTM3_ORYNI_4536 and tr_I1NRX9_I1NRX9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GI95_A0A0E0GI95_ORYNI_4536 and tr_I1R870_I1R870_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GI95_A0A0E0GI95_ORYNI_4536 and tr_Q2QLM8_Q2QLM8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G5BBU6_G5BBU6_HETGA_10181 and tr_A0A091CY57_A0A091CY57_FUKDA_885580 are exactly identical! WARNING: Sequences tr_K7G1S6_K7G1S6_PELSI_13735 and tr_A0A099YYU7_A0A099YYU7_TINGU_94827 are exactly identical! WARNING: Sequences tr_I1PED5_I1PED5_ORYGL_4538 and tr_A0A0D9ZBK2_A0A0D9ZBK2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1PED5_I1PED5_ORYGL_4538 and tr_Q84SW9_Q84SW9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1PX68_I1PX68_ORYGL_4538 and tr_A0A0D3G9P0_A0A0D3G9P0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_G3SR35_G3SR35_LOXAF_9785 and tr_A0A2Y9R7T4_A0A2Y9R7T4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_B5FXL1_B5FXL1_TAEGU_59729 and tr_A0A091F7M0_A0A091F7M0_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A0E0N2X6_A0A0E0N2X6_ORYRU_4529 and tr_A0A0P0V8K7_A0A0P0V8K7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0NZH9_A0A0E0NZH9_ORYRU_4529 and tr_A0A0D3FMD9_A0A0D3FMD9_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0PPV2_A0A0E0PPV2_ORYRU_4529 and tr_Q0DGU0_Q0DGU0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B3S596_B3S596_TRIAD_10228 and tr_A0A369SHM1_A0A369SHM1_9METZ_287889 are exactly identical! WARNING: Sequences tr_M4EAB9_M4EAB9_BRARP_51351 and tr_A0A078GPV2_A0A078GPV2_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4ETL3_M4ETL3_BRARP_51351 and tr_A0A078HPY7_A0A078HPY7_BRANA_3708 are exactly identical! WARNING: Sequences tr_W2QFK5_W2QFK5_PHYPN_761204 and tr_W2LLY7_W2LLY7_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6LEU6_A0A3B6LEU6_WHEAT_4565 and tr_A0A3B6MJR0_A0A3B6MJR0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A067H9K2_A0A067H9K2_CITSI_2711 and tr_V4V7U9_V4V7U9_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067H9K2_A0A067H9K2_CITSI_2711 and tr_A0A2H5NGU1_A0A2H5NGU1_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4UI17_V4UI17_9ROSI_85681 and tr_A0A2H5NRR7_A0A2H5NRR7_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4UJS8_V4UJS8_9ROSI_85681 and tr_A0A2H5N2L8_A0A2H5N2L8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2SKT9_A0A0D2SKT9_GOSRA_29730 and tr_A0A1U8MZ51_A0A1U8MZ51_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A0Q3U1V4_A0A0Q3U1V4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A091K694_A0A091K694_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A093KBT5_A0A093KBT5_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A091WBI9_A0A091WBI9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A0A0AQL9_A0A0A0AQL9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A151N4I9_A0A151N4I9_ALLMI_8496 and tr_A0A1U8CX29_A0A1U8CX29_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1S4AVS6_A0A1S4AVS6_TOBAC_4097 and tr_A0A1U7XYP7_A0A1U7XYP7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4C6V9_A0A1S4C6V9_TOBAC_4097 and tr_A0A1U7VJL6_A0A1U7VJL6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CC97_A0A1S4CC97_TOBAC_4097 and tr_A0A1U7WXV3_A0A1U7WXV3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A3Q0EY97_A0A3Q0EY97_VIGRR_3916 and tr_A0A3Q0EZV0_A0A3Q0EZV0_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A1U8FXQ4_A0A1U8FXQ4_CAPAN_4072 and tr_A0A2G3D914_A0A2G3D914_CAPCH_80379 are exactly identical! WARNING: Sequences tr_C0LSK6_C0LSK6_CAPAN_4072 and tr_A0A2G3D341_A0A2G3D341_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2U4B9I9_A0A2U4B9I9_TURTR_9739 and tr_A0A2Y9P501_A0A2Y9P501_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B9I9_A0A2U4B9I9_TURTR_9739 and tr_A0A2Y9TH61_A0A2Y9TH61_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 86 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.reduced.phy Alignment comprises 1 partitions and 1863 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 1863 Gaps: 80.65 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/3_mltree/P38398.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 466 / 37280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -473647.593240 [00:00:00 -473647.593240] Initial branch length optimization [00:00:05 -361563.742696] Model parameter optimization (eps = 0.100000) [00:02:25] Tree #1, final logLikelihood: -359695.164792 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.055913,0.395438) (0.039823,0.904667) (0.345139,0.709162) (0.559126,1.246776) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P38398/4_raxmlng_ancestral/P38398.raxml.log Analysis started: 03-Jun-2021 01:30:59 / finished: 03-Jun-2021 01:33:40 Elapsed time: 161.020 seconds Consumed energy: 13.636 Wh