RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 01:57:59 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/2_msa/P37173_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/3_mltree/P37173.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674679 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/2_msa/P37173_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 567 sites WARNING: Sequences tr_F1NCI7_F1NCI7_CHICK_9031 and sp_Q90670_AVR2B_CHICK_9031 are exactly identical! WARNING: Sequences sp_Q90669_AVR2A_CHICK_9031 and tr_U3IUS5_U3IUS5_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P27038_AVR2A_MOUSE_10090 and tr_G3HY37_G3HY37_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P27038_AVR2A_MOUSE_10090 and tr_G1TBJ7_G1TBJ7_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XMQ1_M3XMQ1_MUSPF_9669 and tr_A0A2Y9IQ32_A0A2Y9IQ32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_G1M6Y2_G1M6Y2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_A0A2I2U1C7_A0A2I2U1C7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_A0A2U3VJ27_A0A2U3VJ27_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_A0A2U3XU21_A0A2U3XU21_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_A0A2Y9KR32_A0A2Y9KR32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XN09_M3XN09_MUSPF_9669 and tr_A0A384BST5_A0A384BST5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_F1PKQ5_F1PKQ5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_F7CD19_F7CD19_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_G1M4A6_G1M4A6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_A0A2U3X8H0_A0A2U3X8H0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_A0A2Y9J7N8_A0A2Y9J7N8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XWY2_M3XWY2_MUSPF_9669 and tr_A0A384CI68_A0A384CI68_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3HEB5_A0A2I3HEB5_NOMLE_61853 and sp_Q13873_BMPR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QJA7_G1QJA7_NOMLE_61853 and tr_A0A2J8SUK4_A0A2J8SUK4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QJA7_G1QJA7_NOMLE_61853 and sp_Q04771_ACVR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_A0A2J8V7M3_A0A2J8V7M3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_K7ALD8_K7ALD8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and sp_P27037_AVR2A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_G7PKJ4_G7PKJ4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_A0A096NSM4_A0A096NSM4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_A0A0D9RUH1_A0A0D9RUH1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_A0A2K6DZY5_A0A2K6DZY5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RCV0_G1RCV0_NOMLE_61853 and tr_A0A2K5Y375_A0A2K5Y375_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YVY6_A0A2I2YVY6_GORGO_9595 and tr_A0A0D9RTS1_A0A0D9RTS1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZVD2_A0A2I2ZVD2_GORGO_9595 and tr_A0A2I3S7X1_A0A2I3S7X1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZVD2_A0A2I2ZVD2_GORGO_9595 and tr_A0A2R9AE23_A0A2R9AE23_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8SXN2_A0A2J8SXN2_PONAB_9601 and tr_A0A0D9R0J5_A0A0D9R0J5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2I3SJM1_A0A2I3SJM1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and sp_Q13705_AVR2B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2I3LN25_A0A2I3LN25_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2K5MTS0_A0A2K5MTS0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2K6C802_A0A2K6C802_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q299T8_Q299T8_DROPS_46245 and tr_B4G5Q5_B4G5Q5_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29M17_Q29M17_DROPS_46245 and tr_B4G6Q1_B4G6Q1_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QIU8_H2QIU8_PANTR_9598 and tr_A0A2R9BBB6_A0A2R9BBB6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A087ZTR8_A0A087ZTR8_APIME_7460 and tr_A0A2A3EBW5_A0A2A3EBW5_APICC_94128 are exactly identical! WARNING: Sequences sp_P36897_TGFR1_HUMAN_9606 and tr_A0A2K5LD97_A0A2K5LD97_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Q1B1_F6Q1B1_MACMU_9544 and tr_A0A2K6DIZ3_A0A2K6DIZ3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7A9J8_F7A9J8_MACMU_9544 and tr_G7PKM2_G7PKM2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7A9J8_F7A9J8_MACMU_9544 and tr_A0A0D9RTR7_A0A0D9RTR7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7A9J8_F7A9J8_MACMU_9544 and tr_A0A2K5NWQ4_A0A2K5NWQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7A9J8_F7A9J8_MACMU_9544 and tr_A0A2K6CVH7_A0A2K6CVH7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7A9J8_F7A9J8_MACMU_9544 and tr_A0A2K5ZEV2_A0A2K5ZEV2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_G7PL79_G7PL79_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A096MZD4_A0A096MZD4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A0D9RDM2_A0A0D9RDM2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A2K6C0I0_A0A2K6C0I0_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q7PDC5_Q7PDC5_ANOGA_7165 and tr_Q7Q466_Q7Q466_ANOGA_7165 are exactly identical! WARNING: Sequences tr_G3SQU9_G3SQU9_LOXAF_9785 and tr_A0A2Y9R3F0_A0A2Y9R3F0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3UDV2_G3UDV2_LOXAF_9785 and tr_D3K5N5_D3K5N5_PIG_9823 are exactly identical! WARNING: Sequences tr_G3UDV2_G3UDV2_LOXAF_9785 and tr_F1MSQ2_F1MSQ2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A2VDM5_A2VDM5_BOVIN_9913 and sp_Q28041_ACVR1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q28043_AVR2A_BOVIN_9913 and tr_A0A2U4AJC4_A0A2U4AJC4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q28043_AVR2A_BOVIN_9913 and tr_A0A2Y9N832_A0A2Y9N832_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q28043_AVR2A_BOVIN_9913 and tr_A0A2Y9ETQ5_A0A2Y9ETQ5_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q28043_AVR2A_BOVIN_9913 and tr_A0A384A711_A0A384A711_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2U3WSP8_A0A2U3WSP8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2Y9KTY4_A0A2Y9KTY4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2Y9TAV5_A0A2Y9TAV5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_U3JBE7_U3JBE7_FICAL_59894 and tr_A0A218U9E3_A0A218U9E3_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096MTD0_A0A096MTD0_PAPAN_9555 and tr_A0A2K6AS21_A0A2K6AS21_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MTD0_A0A096MTD0_PAPAN_9555 and tr_A0A2K5YZ50_A0A2K5YZ50_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096N140_A0A096N140_PAPAN_9555 and tr_A0A2K5NAD4_A0A2K5NAD4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NRY2_A0A096NRY2_PAPAN_9555 and tr_A0A2K5MZP9_A0A2K5MZP9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3NGA1_A0A2I3NGA1_PAPAN_9555 and tr_A0A2K6BUU5_A0A2K6BUU5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151MRQ1_A0A151MRQ1_ALLMI_8496 and tr_A0A1U7SFB6_A0A1U7SFB6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A087QSP6_A0A087QSP6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A091WNP7_A0A091WNP7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A0A0AEB0_A0A0A0AEB0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F7R1_A0A091F7R1_CORBR_85066 and tr_A0A093Q4Q3_A0A093Q4Q3_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JIJ0_A0A091JIJ0_EGRGA_188379 and tr_A0A093JVM8_A0A093JVM8_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JK81_A0A091JK81_EGRGA_188379 and tr_A0A091WD22_A0A091WD22_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JK81_A0A091JK81_EGRGA_188379 and tr_A0A0A0AM36_A0A0A0AM36_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JLL3_A0A091JLL3_EGRGA_188379 and tr_A0A091W1H9_A0A091W1H9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JLL3_A0A091JLL3_EGRGA_188379 and tr_A0A093H3F6_A0A093H3F6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JLL3_A0A091JLL3_EGRGA_188379 and tr_A0A091WAW3_A0A091WAW3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JLL3_A0A091JLL3_EGRGA_188379 and tr_A0A099ZVM4_A0A099ZVM4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V0WVB0_A0A0V0WVB0_9BILA_92179 and tr_A0A0V1LQ10_A0A0V1LQ10_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WVB0_A0A0V0WVB0_9BILA_92179 and tr_A0A0V0UH63_A0A0V0UH63_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0VV75_A0A0V0VV75_9BILA_181606 and tr_A0A0V1PLB9_A0A0V1PLB9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1S3LKB8_A0A1S3LKB8_SALSA_8030 and tr_C0HBI7_C0HBI7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3Q0E247_A0A3Q0E247_TARSY_1868482 and tr_A0A1U8BKP3_A0A1U8BKP3_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2U4ALZ8_A0A2U4ALZ8_TURTR_9739 and tr_A0A384A9X1_A0A384A9X1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BNC6_A0A2U4BNC6_TURTR_9739 and tr_A0A2Y9MMB7_A0A2Y9MMB7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BNC6_A0A2U4BNC6_TURTR_9739 and tr_A0A2Y9SPM8_A0A2Y9SPM8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BNC6_A0A2U4BNC6_TURTR_9739 and tr_A0A384ATI5_A0A384ATI5_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 91 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.reduced.phy Alignment comprises 1 partitions and 567 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 567 Gaps: 22.65 % Invariant sites: 1.41 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/3_mltree/P37173.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 142 / 11360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -159784.964265 [00:00:00 -159784.964265] Initial branch length optimization [00:00:01 -156623.291232] Model parameter optimization (eps = 0.100000) [00:00:40] Tree #1, final logLikelihood: -156261.104990 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.237246,0.211820) (0.164067,0.327398) (0.362780,0.923534) (0.235907,2.378019) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P37173/4_raxmlng_ancestral/P37173.raxml.log Analysis started: 03-Jun-2021 01:57:59 / finished: 03-Jun-2021 01:58:45 Elapsed time: 46.348 seconds Consumed energy: 3.038 Wh