RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 17:22:36 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/2_msa/P35716_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/2_msa/P35716_trimmed_msa.fasta [00:00:00] Loaded alignment with 998 taxa and 77 sites WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_M9PFG6_M9PFG6_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_B4HHC5_B4HHC5_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_B4MKJ4_B4MKJ4_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_B3M3H9_B3M3H9_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_A0A0L0C804_A0A0L0C804_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_A0A1W4U7G0_A0A1W4U7G0_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_M9PCG2_M9PCG2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B4HHC6_B4HHC6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B5DPQ1_B5DPQ1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B4MKJ3_B4MKJ3_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B3M3H8_B3M3H8_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B4LFZ9_B4LFZ9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B4KV68_B4KV68_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_A0A1W4UIJ4_A0A1W4UIJ4_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and sp_Q24533_DICH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4IYR5_B4IYR5_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4HHC8_B4HHC8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_Q2M076_Q2M076_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4MKJ2_B4MKJ2_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B3M3H7_B3M3H7_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4GS04_B4GS04_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4LG00_B4LG00_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4KV69_B4KV69_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_A0A1W4UIJ8_A0A1W4UIJ8_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9FRD3_E9FRD3_DAPPU_6669 and tr_A0A162EDL1_A0A162EDL1_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9FRD4_E9FRD4_DAPPU_6669 and tr_A0A0P6AC27_A0A0P6AC27_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A158NLW3_A0A158NLW3_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A026WFP6_A0A026WFP6_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A0L7QNM8_A0A0L7QNM8_9HYME_597456 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A154PP54_A0A154PP54_9HYME_178035 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A195BK79_A0A195BK79_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A195FVF1_A0A195FVF1_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2B1E2_E2B1E2_CAMFO_104421 and tr_A0A195CCP2_A0A195CCP2_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A0R4IQD2_A0A0R4IQD2_DANRE_7955 and tr_F7DGV9_F7DGV9_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P47792_SX19A_DANRE_7955 and tr_W5NAZ1_W5NAZ1_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_C3VV16_C3VV16_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_M4AYX6_M4AYX6_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_W5NLJ8_W5NLJ8_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A087YSU3_A0A087YSU3_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A0N8JXW7_A0A0N8JXW7_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A1S3KK65_A0A1S3KK65_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2I4AI34_A0A2I4AI34_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A060Y4B1_A0A060Y4B1_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2D0RWN4_A0A2D0RWN4_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2U9C5L8_A0A2U9C5L8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q5TZG4_Q5TZG4_DANRE_7955 and tr_W5K2E5_W5K2E5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q5TZG4_Q5TZG4_DANRE_7955 and tr_W5UI34_W5UI34_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_Q9PT76_Q9PT76_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_M4AYL9_M4AYL9_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A3B5KG54_A0A3B5KG54_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_G3PYK1_G3PYK1_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_W5NLT9_W5NLT9_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A087YS71_A0A087YS71_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A1S3RTX5_A0A1S3RTX5_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A1S3STQ3_A0A1S3STQ3_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A2I4AY38_A0A2I4AY38_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A060WMX3_A0A060WMX3_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A060XCS5_A0A060XCS5_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_W5UFA9_W5UFA9_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q6EJB7_SOX3_DANRE_7955 and tr_A0A2U9C5V8_A0A2U9C5V8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1D5PBR4_A0A1D5PBR4_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_M3Y0P3_M3Y0P3_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G1QMH4_G1QMH4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3R9D7_G3R9D7_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H2PI18_H2PI18_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H2R7L3_H2R7L3_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_F6WHW4_F6WHW4_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_W5PIE5_W5PIE5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H0XWI6_H0XWI6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H0W7J3_H0W7J3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and sp_Q06945_SOX4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_F7BAX2_F7BAX2_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3UE81_G3UE81_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3WBV5_G3WBV5_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2R8MZF4_A0A2R8MZF4_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_F1RUF9_F1RUF9_PIG_9823 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H3A415_H3A415_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G1LXC4_G1LXC4_AILME_9646 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3MYL8_G3MYL8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_L5KUT2_L5KUT2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A337STZ2_A0A337STZ2_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_U3KGF4_U3KGF4_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_W5NP80_W5NP80_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A096NL90_A0A096NL90_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A0D9SCM6_A0A0D9SCM6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A151NF91_A0A151NF91_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A0Q3XB15_A0A0Q3XB15_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1S2ZVF2_A0A1S2ZVF2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1S3GP47_A0A1S3GP47_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1U7UGJ3_A0A1U7UGJ3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1V4JGP2_A0A1V4JGP2_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2K5KSW9_A0A2K5KSW9_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2K6AYT6_A0A2K6AYT6_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2R9C575_A0A2R9C575_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2U4C5Q8_A0A2U4C5Q8_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2U3WW80_A0A2U3WW80_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2U3XQ93_A0A2U3XQ93_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2Y9RRA2_A0A2Y9RRA2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2Y9IJZ2_A0A2Y9IJZ2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2Y9P5V4_A0A2Y9P5V4_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2Y9SQ96_A0A2Y9SQ96_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A384BC17_A0A384BC17_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and sp_Q811W0_SOX21_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_M3YK79_M3YK79_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_G3RV32_G3RV32_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_H2NK54_H2NK54_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_F7GJS8_F7GJS8_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_M4AYS5_M4AYS5_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_I3KZ58_I3KZ58_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_H0XS41_H0XS41_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A3B5KJ66_A0A3B5KJ66_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and sp_Q9Y651_SOX21_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1D5Q2F1_A0A1D5Q2F1_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_G3NJA1_G3NJA1_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_G3WW72_G3WW72_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2R8M5Q0_A0A2R8M5Q0_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_F2Z520_F2Z520_PIG_9823 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_H3ACQ6_H3ACQ6_LATCH_7897 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_E1BHN5_E1BHN5_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_L5KHK0_L5KHK0_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A337SPQ4_A0A337SPQ4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_U3KLB6_U3KLB6_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_W5NMM8_W5NMM8_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A087YQH6_A0A087YQH6_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A091E5I3_A0A091E5I3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A0D9SA80_A0A0D9SA80_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A0Q3M4K4_A0A0Q3M4K4_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1S3P074_A0A1S3P074_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1S3PMG1_A0A1S3PMG1_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1U8CAT8_A0A1U8CAT8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2I4CFI5_A0A2I4CFI5_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A060WTL2_A0A060WTL2_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A060ZA93_A0A060ZA93_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A218VAW0_A0A218VAW0_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2K5KLQ7_A0A2K5KLQ7_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2K6ARY4_A0A2K6ARY4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U4A6V4_A0A2U4A6V4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U3WIY9_A0A2U3WIY9_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U3YIU1_A0A2U3YIU1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U9CAD7_A0A2U9CAD7_SCOMX_52904 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2Y9DCE7_A0A2Y9DCE7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2Y9JDE3_A0A2Y9JDE3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2Y9NI67_A0A2Y9NI67_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2Y9STB0_A0A2Y9STB0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A384BBY7_A0A384BBY7_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A087XVX1_A0A087XVX1_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A0P7XLU6_A0A0P7XLU6_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q7SZS1_SX21A_DANRE_7955 and tr_W5LTE9_W5LTE9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_W5LT86_W5LT86_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_W5NPA7_W5NPA7_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A1S3LBS2_A0A1S3LBS2_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A1S3P5I8_A0A1S3P5I8_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A060WIJ8_A0A060WIJ8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A060Y709_A0A060Y709_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_H2MJF0_H2MJF0_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A3B5PU93_A0A3B5PU93_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_I3KXU0_I3KXU0_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_H2S5D1_H2S5D1_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_H3DIU8_H3DIU8_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A3B1IKP5_A0A3B1IKP5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_W5NNA0_W5NNA0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A087Y201_A0A087Y201_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A096LYN1_A0A096LYN1_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A0N8K057_A0A0N8K057_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A0P7WER9_A0A0P7WER9_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A1S3SMU1_A0A1S3SMU1_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A2I4D4F1_A0A2I4D4F1_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A060W0B2_A0A060W0B2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A060WS82_A0A060WS82_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_W5UA24_W5UA24_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9I9C8_Q9I9C8_DANRE_7955 and tr_A0A2U9CKX8_A0A2U9CKX8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A1D5NZD9_A0A1D5NZD9_CHICK_9031 and tr_U3JVA2_U3JVA2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5NZD9_A0A1D5NZD9_CHICK_9031 and tr_A0A1L8FT01_A0A1L8FT01_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5PVF7_A0A1D5PVF7_CHICK_9031 and tr_A0A218UG33_A0A218UG33_9PASE_299123 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_F7DWW3_F7DWW3_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_K7EXN5_K7EXN5_PELSI_13735 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_H0ZJW3_H0ZJW3_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and sp_Q6NVN0_SOX2_XENTR_8364 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_H3ACM9_H3ACM9_LATCH_7897 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_U3KIZ4_U3KIZ4_FICAL_59894 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_R0KWE0_R0KWE0_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A0Q3PJC3_A0A0Q3PJC3_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091EYU2_A0A091EYU2_CORBR_85066 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091K6J2_A0A091K6J2_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A093PXB6_A0A093PXB6_9PASS_328815 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A087RJ12_A0A087RJ12_APTFO_9233 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A093HWE3_A0A093HWE3_STRCA_441894 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A099YUM4_A0A099YUM4_TINGU_94827 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091GLG9_A0A091GLG9_9AVES_55661 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A0A0A2A4_A0A0A0A2A4_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A2I0MBE9_A0A2I0MBE9_COLLI_8932 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A093GRJ8_A0A093GRJ8_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091HZF1_A0A091HZF1_CALAN_9244 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A1U7RFS2_A0A1U7RFS2_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A226MZU5_A0A226MZU5_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A226PSS4_A0A226PSS4_COLVI_9014 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_K7EYI7_K7EYI7_PELSI_13735 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_H0Z779_H0Z779_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A151N7K8_A0A151N7K8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A0Q3PRT9_A0A0Q3PRT9_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A091JP60_A0A091JP60_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A093PL45_A0A093PL45_9PASS_328815 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A091VCP5_A0A091VCP5_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A093HIF0_A0A093HIF0_STRCA_441894 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A091GI12_A0A091GI12_9AVES_55661 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A093H204_A0A093H204_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A091IEF1_A0A091IEF1_CALAN_9244 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A1U7RXR7_A0A1U7RXR7_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A1V4KYG0_A0A1V4KYG0_PATFA_372326 are exactly identical! WARNING: Sequences sp_P48433_SOX3_CHICK_9031 and tr_A0A226MNQ9_A0A226MNQ9_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_Q7M6Y2_SOX11_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H9GHI5_H9GHI5_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G1TFU0_G1TFU0_RABIT_9986 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I3TNT6_A0A2I3TNT6_PANTR_9598 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_F7ASQ9_F7ASQ9_MONDO_13616 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_W5PYZ6_W5PYZ6_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_P0C1G9_SOX11_RAT_10116 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0XGP9_H0XGP9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0VXU7_H0VXU7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_P35716_SOX11_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1D5R7Q8_A0A1D5R7Q8_MACMU_9544 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G3UA55_G3UA55_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G3WF82_G3WF82_SARHA_9305 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0ZRX8_H0ZRX8_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2R8MWJ4_A0A2R8MWJ4_CALJA_9483 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_F1S9L1_F1S9L1_PIG_9823 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_L5KRB6_L5KRB6_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_U3KJG5_U3KJG5_FICAL_59894 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_U3I4N7_U3I4N7_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A0D9S9T7_A0A0D9S9T7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A151N801_A0A151N801_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091FVP8_A0A091FVP8_CORBR_85066 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091IX80_A0A091IX80_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093QY60_A0A093QY60_9PASS_328815 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091VWA1_A0A091VWA1_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A087QUY8_A0A087QUY8_APTFO_9233 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093HF61_A0A093HF61_STRCA_441894 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A099ZVI4_A0A099ZVI4_TINGU_94827 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I0MTM2_A0A2I0MTM2_COLLI_8932 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093IGV7_A0A093IGV7_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091I6J2_A0A091I6J2_CALAN_9244 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1S3AA59_A0A1S3AA59_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1S3GWC8_A0A1S3GWC8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1U7RT26_A0A1U7RT26_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1U8CDB4_A0A1U8CDB4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1V4JN48_A0A1V4JN48_PATFA_372326 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A218VDJ9_A0A218VDJ9_9PASE_299123 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A226NDZ2_A0A226NDZ2_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A226P3V3_A0A226P3V3_COLVI_9014 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2K5L0J2_A0A2K5L0J2_CERAT_9531 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2K6AS12_A0A2K6AS12_MACNE_9545 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U4BY54_A0A2U4BY54_TURTR_9739 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U3W0Y6_A0A2U3W0Y6_ODORO_9708 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U3YXA3_A0A2U3YXA3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9DEI8_A0A2Y9DEI8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9K7L9_A0A2Y9K7L9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9MJ34_A0A2Y9MJ34_DELLE_9749 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9SF24_A0A2Y9SF24_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_G1KAS3_G1KAS3_ANOCA_28377 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A151NRH8_A0A151NRH8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A226M6J9_A0A226M6J9_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A226MUU1_A0A226MUU1_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A226NYS8_A0A226NYS8_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_Q04892_SOX14_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_M3Z4N2_M3Z4N2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G1SBJ0_G1SBJ0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3HEY5_G3HEY5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3RDD2_G3RDD2_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H2PBI9_H2PBI9_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G1TJ86_G1TJ86_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I3TV57_A0A2I3TV57_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_F6XNT3_F6XNT3_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_W5Q1Z3_W5Q1Z3_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_B7SZV3_B7SZV3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A287D385_A0A287D385_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0WE30_H0WE30_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_O95416_SOX14_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_F7HQE3_F7HQE3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G5BC40_G5BC40_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3SSE7_G3SSE7_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3WHS5_G3WHS5_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0Z8W5_H0Z8W5_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_A4QNG3_SOX14_XENTR_8364 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8P701_A0A2R8P701_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H3AVL8_H3AVL8_LATCH_7897 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G7P040_G7P040_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_L5KZV5_L5KZV5_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I2U9L9_A0A2I2U9L9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3KIG3_U3KIG3_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3HYI1_U3HYI1_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A096MSU2_A0A096MSU2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091EBT3_A0A091EBT3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0D9SC48_A0A0D9SC48_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A151NGX8_A0A151NGX8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0Q3PLH6_A0A0Q3PLH6_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093Q8L4_A0A093Q8L4_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091UW48_A0A091UW48_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093J9H0_A0A093J9H0_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091XRL3_A0A091XRL3_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0A0AMQ0_A0A0A0AMQ0_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093GCB4_A0A093GCB4_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091HR26_A0A091HR26_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S2ZMY7_A0A1S2ZMY7_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S3GQ94_A0A1S3GQ94_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1L8G4Z6_A0A1L8G4Z6_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1L8GB57_A0A1L8GB57_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7T8B1_A0A1U7T8B1_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7RC23_A0A1U7RC23_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7QSF6_A0A1U7QSF6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1V4KQX0_A0A1V4KQX0_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A218UEN1_A0A218UEN1_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226NCN2_A0A226NCN2_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226PUW5_A0A226PUW5_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5KS53_A0A2K5KS53_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K6ANL6_A0A2K6ANL6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5XVC7_A0A2K5XVC7_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8ZCF2_A0A2R8ZCF2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U4B8W6_A0A2U4B8W6_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3WV20_A0A2U3WV20_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3X925_A0A2U3X925_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9DUM9_A0A2Y9DUM9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9KGL2_A0A2Y9KGL2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9NT43_A0A2Y9NT43_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9FBD0_A0A2Y9FBD0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A384DHB9_A0A384DHB9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A383Z5H6_A0A383Z5H6_BALAS_310752 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_M3XRQ5_M3XRQ5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_G1Q1Y7_G1Q1Y7_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_G3QS49_G3QS49_GORGO_9595 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_K7ESR9_K7ESR9_PONAB_9601 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2I3S8Z2_A0A2I3S8Z2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_D3ZTE1_D3ZTE1_RAT_10116 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_I3N3X7_I3N3X7_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_H0Y1L2_H0Y1L2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and sp_Q9BT81_SOX7_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_F6Z4T7_F6Z4T7_CALJA_9483 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A287A8T2_A0A287A8T2_PIG_9823 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2I2UE66_A0A2I2UE66_FELCA_9685 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A096MZ97_A0A096MZ97_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A1S2ZCJ5_A0A1S2ZCJ5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A1U7QBA4_A0A1U7QBA4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2K5M610_A0A2K5M610_CERAT_9531 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2K6CKJ3_A0A2K6CKJ3_MACNE_9545 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2U3VK82_A0A2U3VK82_ODORO_9708 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2U3XQK6_A0A2U3XQK6_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2Y9KCH9_A0A2Y9KCH9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2Y9PYS2_A0A2Y9PYS2_DELLE_9749 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2Y9T6H2_A0A2Y9T6H2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_G1SBA9_G1SBA9_NOMLE_61853 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_G1QC55_G1QC55_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_H2PC44_H2PC44_PONAB_9601 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_G1T0P5_G1T0P5_RABIT_9986 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_E2R1W3_E2R1W3_CANLF_9615 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_H2R486_H2R486_PANTR_9598 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and sp_P54231_SOX2_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_D4A543_D4A543_RAT_10116 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_H0Y203_H0Y203_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and sp_P48431_SOX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_B8XIA2_B8XIA2_MACMU_9544 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_F7H274_F7H274_CALJA_9483 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_B1PXF9_B1PXF9_PIG_9823 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_G1LWY8_G1LWY8_AILME_9646 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A2VDX8_A2VDX8_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_D3U659_D3U659_FELCA_9685 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A096NUA5_A0A096NUA5_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A0D9SC13_A0A0D9SC13_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A1S3GJU6_A0A1S3GJU6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A3Q0E395_A0A3Q0E395_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A1U7QKX9_A0A1U7QKX9_MESAU_10036 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2K5KW19_A0A2K5KW19_CERAT_9531 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2K6B307_A0A2K6B307_MACNE_9545 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2U3X3J9_A0A2U3X3J9_ODORO_9708 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2U3XIJ2_A0A2U3XIJ2_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2Y9JY45_A0A2Y9JY45_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2Y9N1T3_A0A2Y9N1T3_DELLE_9749 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A2Y9FML7_A0A2Y9FML7_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_H2P1I0_H2P1I0_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_E2RH58_E2RH58_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_K7CW19_K7CW19_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_H0XKX2_H0XKX2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A286X7U6_A0A286X7U6_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and sp_O15370_SOX12_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A1D5QB43_A0A1D5QB43_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2R8ML84_A0A2R8ML84_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_I3LK63_I3LK63_PIG_9823 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A337RVV8_A0A337RVV8_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A096N4N0_A0A096N4N0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A0D9SBP5_A0A0D9SBP5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A1S2ZQT1_A0A1S2ZQT1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A3Q0C9F2_A0A3Q0C9F2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2K5L3D6_A0A2K5L3D6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2K6ATW4_A0A2K6ATW4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3VAD4_A0A2U3VAD4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3VEI1_A0A2U3VEI1_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3X7Y7_A0A2U3X7Y7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9D9W8_A0A2Y9D9W8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9IPI9_A0A2Y9IPI9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9PZ92_A0A2Y9PZ92_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9T670_A0A2Y9T670_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q06831_SOX4_MOUSE_10090 and tr_A0A1U7QHY6_A0A1U7QHY6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G3S507_G3S507_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G3V923_G3V923_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_H0XM42_H0XM42_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and sp_Q8AWH3_SX17A_XENTR_8364 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2R8N6U9_A0A2R8N6U9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G7PBU8_G7PBU8_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1S2Z9R2_A0A1S2Z9R2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1S3EMN3_A0A1S3EMN3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1U7RF78_A0A1U7RF78_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_H0WXT4_H0WXT4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_A0A096P2R3_A0A096P2R3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_A0A2U3VT99_A0A2U3VT99_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_A0A2U3Y5G9_A0A2U3Y5G9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_A0A2Y9L2S9_A0A2Y9L2S9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P40656_SOX14_DROME_7227 and tr_A0A0M4E7G8_A0A0M4E7G8_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A3B3HA16_A0A3B3HA16_ORYLA_8090 and tr_M4AYE9_M4AYE9_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HA16_A0A3B3HA16_ORYLA_8090 and tr_Q6WNU2_Q6WNU2_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HA16_A0A3B3HA16_ORYLA_8090 and tr_A0A087XSE9_A0A087XSE9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_M4AZB1_M4AZB1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_I3KY88_I3KY88_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_Q6WNT5_Q6WNT5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_Q4SIN0_Q4SIN0_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A087XH71_A0A087XH71_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A1S3LZ60_A0A1S3LZ60_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A1S3Q2N9_A0A1S3Q2N9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A2I4AIG3_A0A2I4AIG3_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A060Z6M0_A0A060Z6M0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A2U9BLI9_A0A2U9BLI9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_C3VV12_C3VV12_ORYLA_8090 and tr_A0A2U9CQU2_A0A2U9CQU2_SCOMX_52904 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_Q6WNS5_Q6WNS5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_H3DIC0_H3DIC0_TETNG_99883 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_A0A2U9CMZ3_A0A2U9CMZ3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_M4A5D2_M4A5D2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_I3KY57_I3KY57_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_G3NTT5_G3NTT5_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_A0A2I4DAM4_A0A2I4DAM4_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_A0A2U9AZB0_A0A2U9AZB0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_M4B0D0_M4B0D0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_I3KZS2_I3KZS2_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_G3NRV5_G3NRV5_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_W5LUD5_W5LUD5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_A0A087YRN8_A0A087YRN8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_A0A0P7V8G2_A0A0P7V8G2_9TELE_113540 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_A0A1S3PBK7_A0A1S3PBK7_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_B5X176_B5X176_SALSA_8030 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_A0A2I4CSB7_A0A2I4CSB7_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_W5UF16_W5UF16_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2M836_H2M836_ORYLA_8090 and tr_A0A2U9C3D4_A0A2U9C3D4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_B4IYR7_B4IYR7_DROGR_7222 and tr_B4LFZ8_B4LFZ8_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4IYR7_B4IYR7_DROGR_7222 and tr_B4KV67_B4KV67_DROMO_7230 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_G3SA93_G3SA93_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_A0A2J8KPH4_A0A2J8KPH4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and sp_O60248_SOX15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_G7PTI4_G7PTI4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_A0A0D9RG54_A0A0D9RG54_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_A0A2K5NCK4_A0A2K5NCK4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_A0A2K6D1T5_A0A2K6D1T5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1REV6_G1REV6_NOMLE_61853 and tr_A0A2K6A9Y5_A0A2K6A9Y5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_E2R3H4_E2R3H4_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_F7E2Q6_F7E2Q6_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_I3M6F6_I3M6F6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_G3SMZ5_G3SMZ5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_F1ST29_F1ST29_PIG_9823 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_L5JXN1_L5JXN1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_M3WBS1_M3WBS1_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_A0A2Y9PWG0_A0A2Y9PWG0_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_A0A2Y9EF37_A0A2Y9EF37_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1P054_G1P054_MYOLU_59463 and tr_A0A383YUC3_A0A383YUC3_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3GTI9_G3GTI9_CRIGR_10029 and tr_H0YXE0_H0YXE0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G3GTI9_G3GTI9_CRIGR_10029 and tr_A0A091E8L7_A0A091E8L7_CORBR_85066 are exactly identical! WARNING: Sequences tr_G3GTI9_G3GTI9_CRIGR_10029 and tr_A0A099ZEP0_A0A099ZEP0_TINGU_94827 are exactly identical! WARNING: Sequences tr_G3GTI9_G3GTI9_CRIGR_10029 and tr_A0A2I0M7F1_A0A2I0M7F1_COLLI_8932 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_W5PYJ2_W5PYJ2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_F6WQQ2_F6WQQ2_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_A0A2I2V1Z6_A0A2I2V1Z6_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_A0A091DRK7_A0A091DRK7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_A0A2K5N2B7_A0A2K5N2B7_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_A0A2K6DE05_A0A2K6DE05_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2NPN0_H2NPN0_PONAB_9601 and tr_A0A2U4AK12_A0A2U4AK12_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1TGC8_G1TGC8_RABIT_9986 and tr_A0A1S3EYB5_A0A1S3EYB5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q290B8_Q290B8_DROPS_46245 and tr_B4GCG7_B4GCG7_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_G0MB92_G0MB92_CAEBE_135651 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_E3MC38_E3MC38_CAERE_31234 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_A8X4J1_A8X4J1_CAEBR_6238 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_A0A1I7TN07_A0A1I7TN07_9PELO_1561998 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_A0A261CMI7_A0A261CMI7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_Q20201_Q20201_CAEEL_6239 and tr_A0A2G5T0I9_A0A2G5T0I9_9PELO_1611254 are exactly identical! WARNING: Sequences tr_F6SCS3_F6SCS3_MONDO_13616 and tr_G1M1U3_G1M1U3_AILME_9646 are exactly identical! WARNING: Sequences tr_F6SCS3_F6SCS3_MONDO_13616 and tr_A0A1U7TGI1_A0A1U7TGI1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6SCS3_F6SCS3_MONDO_13616 and tr_A0A2U3Z6J2_A0A2U3Z6J2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F6VU03_F6VU03_MONDO_13616 and tr_G3VPA1_G3VPA1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7B8V6_F7B8V6_HORSE_9796 and tr_A0A091DP34_A0A091DP34_FUKDA_885580 are exactly identical! WARNING: Sequences tr_B0X4K1_B0X4K1_CULQU_7176 and tr_Q16NX7_Q16NX7_AEDAE_7159 are exactly identical! WARNING: Sequences tr_A0A3B5Q1I2_A0A3B5Q1I2_XIPMA_8083 and tr_H2T8B8_H2T8B8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5Q1I2_A0A3B5Q1I2_XIPMA_8083 and tr_H3CZS1_H3CZS1_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5Q1I2_A0A3B5Q1I2_XIPMA_8083 and tr_G3NWH9_G3NWH9_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5Q1I2_A0A3B5Q1I2_XIPMA_8083 and tr_A0A087X2X9_A0A087X2X9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5Q1I2_A0A3B5Q1I2_XIPMA_8083 and tr_A0A2U9CPU5_A0A2U9CPU5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_G3Q9G0_G3Q9G0_GASAC_69293 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_A0A3B1IU38_A0A3B1IU38_ASTMX_7994 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_A0A087Y2X6_A0A087Y2X6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AZQ6_M4AZQ6_XIPMA_8083 and tr_A0A087YSJ7_A0A087YSJ7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4B0I1_M4B0I1_XIPMA_8083 and tr_A0A087X8A6_A0A087X8A6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A158NLR6_A0A158NLR6_ATTCE_12957 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_D6WND1_D6WND1_TRICA_7070 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_F4X2P5_F4X2P5_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_E2C2Q9_E2C2Q9_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A026WGD2_A0A026WGD2_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A0M9A4T7_A0A0M9A4T7_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A0L7QNL0_A0A0L7QNL0_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A154PME3_A0A154PME3_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A195FVV5_A0A195FVV5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A195CCA2_A0A195CCA2_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A1W4WKY1_A0A1W4WKY1_AGRPL_224129 are exactly identical! WARNING: Sequences tr_A0A088A1H7_A0A088A1H7_APIME_7460 and tr_A0A2A3EHS8_A0A2A3EHS8_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A0L7QXI8_A0A0L7QXI8_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A154P3K4_A0A154P3K4_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A2A3E8V3_A0A2A3E8V3_APICC_94128 are exactly identical! WARNING: Sequences tr_H9J0P2_H9J0P2_BOMMO_7091 and tr_A0A0L7LN84_A0A0L7LN84_9NEOP_104452 are exactly identical! WARNING: Sequences tr_H9J0P2_H9J0P2_BOMMO_7091 and tr_A0A2A4JMT7_A0A2A4JMT7_HELVI_7102 are exactly identical! WARNING: Sequences tr_H9J3R4_H9J3R4_BOMMO_7091 and tr_A0A212EK00_A0A212EK00_DANPL_278856 are exactly identical! WARNING: Sequences tr_A0A158NI64_A0A158NI64_ATTCE_12957 and tr_A0A151JXI7_A0A151JXI7_9HYME_34720 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q6WNT8_Q6WNT8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q4SV91_Q4SV91_TETNG_99883 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_A0A0P7XKK6_A0A0P7XKK6_9TELE_113540 are exactly identical! WARNING: Sequences tr_I3IVX6_I3IVX6_ORENI_8128 and tr_H2SJJ3_H2SJJ3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5KF53_A0A3B5KF53_TAKRU_31033 and tr_Q4S0P5_Q4S0P5_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5KLL2_A0A3B5KLL2_TAKRU_31033 and tr_Q4RR75_Q4RR75_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6WNT3_Q6WNT3_TAKRU_31033 and tr_H3CW60_H3CW60_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A2H2IM93_A0A2H2IM93_CAEJA_281687 and tr_G0NL03_G0NL03_CAEBE_135651 are exactly identical! WARNING: Sequences tr_K1Q7N0_K1Q7N0_CRAGI_29159 and tr_A0A1S3IRW3_A0A1S3IRW3_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A286XHN1_A0A286XHN1_CAVPO_10141 and tr_A0A091E106_A0A091E106_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A2K6VYH7_A0A2K6VYH7_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A0N4TQT5_A0A0N4TQT5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A0N4TZR8_A0A0N4TZR8_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A0R3RMM9_A0A0R3RMM9_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A183HKX4_A0A183HKX4_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A182ELX6_A0A182ELX6_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0H5S245_A0A0H5S245_BRUMA_6279 and tr_A0A1I7VNN3_A0A1I7VNN3_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A2K6VZ00_A0A2K6VZ00_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0B2VC65_A0A0B2VC65_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0N4TLB5_A0A0N4TLB5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0R3QXA9_A0A0R3QXA9_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0R3RVA9_A0A0R3RVA9_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A182E4X2_A0A182E4X2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A1I7W449_A0A1I7W449_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A158PYF9_A0A158PYF9_BRUMA_6279 and tr_A0A0N4T4Y1_A0A0N4T4Y1_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A158PYF9_A0A158PYF9_BRUMA_6279 and tr_A0A0R3RTQ4_A0A0R3RTQ4_9BILA_1147741 are exactly identical! WARNING: Sequences tr_G5B5D1_G5B5D1_HETGA_10181 and tr_A0A1S2ZNS1_A0A1S2ZNS1_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0S041_A0A0V0S041_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1CTP4_A0A0V1CTP4_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0WVR9_A0A0V0WVR9_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0VQ67_A0A0V0VQ67_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1LB14_A0A0V1LB14_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0XYN1_A0A0V0XYN1_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1MXB4_A0A0V1MXB4_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1PCW0_A0A0V1PCW0_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0UCJ5_A0A0V0UCJ5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A7US70_A7US70_ANOGA_7165 and tr_A0A084WAN2_A0A084WAN2_ANOSI_74873 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A0L7LCX3_A0A0L7LCX3_9NEOP_104452 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A194QNL5_A0A194QNL5_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A194QGW7_A0A194QGW7_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A2A4K865_A0A2A4K865_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A2J7R689_A0A2J7R689_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A212F4S7_A0A212F4S7_DANPL_278856 and tr_A0A194QQ68_A0A194QQ68_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A212F4S7_A0A212F4S7_DANPL_278856 and tr_A0A194QGS9_A0A194QGS9_PAPXU_66420 are exactly identical! WARNING: Sequences tr_D6WND2_D6WND2_TRICA_7070 and tr_E0VEL4_E0VEL4_PEDHC_121224 are exactly identical! WARNING: Sequences tr_D6WND2_D6WND2_TRICA_7070 and tr_A0A2J7R6A1_A0A2J7R6A1_9NEOP_105785 are exactly identical! WARNING: Sequences tr_K7EZR6_K7EZR6_PELSI_13735 and tr_A0A151LZ99_A0A151LZ99_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7EZR6_K7EZR6_PELSI_13735 and tr_A0A3Q0H7C7_A0A3Q0H7C7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G3UE19_G3UE19_LOXAF_9785 and tr_G3W8V7_G3W8V7_SARHA_9305 are exactly identical! WARNING: Sequences tr_G0NH69_G0NH69_CAEBE_135651 and tr_G0NVH3_G0NVH3_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G0NH70_G0NH70_CAEBE_135651 and tr_G0NVH2_G0NVH2_CAEBE_135651 are exactly identical! WARNING: Sequences tr_F7EAA5_F7EAA5_XENTR_8364 and tr_A0A1S2ZZ84_A0A1S2ZZ84_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F7EAA5_F7EAA5_XENTR_8364 and tr_A0A1S3FPD6_A0A1S3FPD6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q28GD5_SOX7_XENTR_8364 and tr_A0A1L8GC14_A0A1L8GC14_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q66JF1_SOX11_XENTR_8364 and tr_A0A1L8G567_A0A1L8G567_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q66JF1_SOX11_XENTR_8364 and tr_A0A1L8GBJ0_A0A1L8GBJ0_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q6F2F0_S17B3_XENTR_8364 and sp_Q8AWH2_S17B1_XENTR_8364 are exactly identical! WARNING: Sequences tr_E3LCV8_E3LCV8_CAERE_31234 and tr_A8XPM5_A8XPM5_CAEBR_6238 are exactly identical! WARNING: Sequences tr_E3LCV8_E3LCV8_CAERE_31234 and tr_A0A1I7TWE9_A0A1I7TWE9_9PELO_1561998 are exactly identical! WARNING: Sequences tr_E3LCV8_E3LCV8_CAERE_31234 and tr_A0A261CSU0_A0A261CSU0_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3LCV8_E3LCV8_CAERE_31234 and tr_A0A2G5SVY4_A0A2G5SVY4_9PELO_1611254 are exactly identical! WARNING: Sequences tr_E3LMN0_E3LMN0_CAERE_31234 and tr_A8XFQ6_A8XFQ6_CAEBR_6238 are exactly identical! WARNING: Sequences tr_E3LMN0_E3LMN0_CAERE_31234 and tr_A0A1I7U6X1_A0A1I7U6X1_9PELO_1561998 are exactly identical! WARNING: Sequences tr_E3LMN0_E3LMN0_CAERE_31234 and tr_A0A1I7U6X2_A0A1I7U6X2_9PELO_1561998 are exactly identical! WARNING: Sequences tr_E3LMN0_E3LMN0_CAERE_31234 and tr_A0A261B1D9_A0A261B1D9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3LMN0_E3LMN0_CAERE_31234 and tr_A0A2G5VLR2_A0A2G5VLR2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_H3AG48_H3AG48_LATCH_7897 and tr_A0A3B1JFM8_A0A3B1JFM8_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H3AG48_H3AG48_LATCH_7897 and tr_A0A060YSN3_A0A060YSN3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B3RIY2_B3RIY2_TRIAD_10228 and tr_A0A369RX36_A0A369RX36_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3RMX4_B3RMX4_TRIAD_10228 and tr_A0A369RRN9_A0A369RRN9_9METZ_287889 are exactly identical! WARNING: Sequences tr_U3KIC5_U3KIC5_FICAL_59894 and tr_A0A218USA2_A0A218USA2_9PASE_299123 are exactly identical! WARNING: Sequences tr_W5LSX1_W5LSX1_ASTMX_7994 and tr_A0A2D0S5H9_A0A2D0S5H9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A044URY0_A0A044URY0_ONCVO_6282 and tr_A0A183GZ34_A0A183GZ34_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044URY0_A0A044URY0_ONCVO_6282 and tr_A0A182EK86_A0A182EK86_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067QV37_A0A067QV37_ZOONE_136037 and tr_A0A2J7QE32_A0A2J7QE32_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A096NK02_A0A096NK02_PAPAN_9555 and tr_A0A0D9R3E1_A0A0D9R3E1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096NK02_A0A096NK02_PAPAN_9555 and tr_A0A2K5L248_A0A2K5L248_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0K0ETZ1_A0A0K0ETZ1_STRVS_75913 and tr_A0A0N5B8Q9_A0A0N5B8Q9_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0FLP3_A0A0K0FLP3_STRVS_75913 and tr_A0A0K0EQI8_A0A0K0EQI8_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0FLP3_A0A0K0FLP3_STRVS_75913 and tr_A0A0N4ZYC1_A0A0N4ZYC1_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0FLP3_A0A0K0FLP3_STRVS_75913 and tr_A0A0N5CDG2_A0A0N5CDG2_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0K0EKE6_A0A0K0EKE6_STRER_6248 and tr_A0A090KZB3_A0A090KZB3_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0EKE6_A0A0K0EKE6_STRER_6248 and tr_A0A0N4ZR20_A0A0N4ZR20_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A090LKA2_A0A090LKA2_STRRB_34506 and tr_A0A0N5B537_A0A0N5B537_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MVN3_A0A151MVN3_ALLMI_8496 and tr_A0A1U7SCR6_A0A1U7SCR6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3PTU9_A0A0Q3PTU9_AMAAE_12930 and tr_A0A0Q3UTU8_A0A0Q3UTU8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A0Q3Q3S9_A0A0Q3Q3S9_AMAAE_12930 and tr_A0A1V4KKK2_A0A1V4KKK2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0M9A3I4_A0A0M9A3I4_9HYME_166423 and tr_A0A154PME9_A0A154PME9_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A194QP31_A0A194QP31_PAPMA_76193 and tr_A0A194QH57_A0A194QH57_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A1S3KKV5_A0A1S3KKV5_SALSA_8030 and tr_A0A1S3RHM6_A0A1S3RHM6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KKV5_A0A1S3KKV5_SALSA_8030 and tr_A0A060VUT3_A0A060VUT3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M958_A0A1S3M958_SALSA_8030 and tr_C0HB19_C0HB19_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M958_A0A1S3M958_SALSA_8030 and tr_A0A060XW24_A0A060XW24_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M958_A0A1S3M958_SALSA_8030 and tr_O57399_O57399_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N8R2_A0A1S3N8R2_SALSA_8030 and tr_A0A060Y9Z2_A0A060Y9Z2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A1S3QA46_A0A1S3QA46_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A060VPX6_A0A060VPX6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A060W3M5_A0A060W3M5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R101_A0A1S3R101_SALSA_8030 and tr_A0A060WN97_A0A060WN97_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SEA8_A0A1S3SEA8_SALSA_8030 and tr_A0A060WAF2_A0A060WAF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0H9Z8_C0H9Z8_SALSA_8030 and tr_A0A060ZAN1_A0A060ZAN1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L8H921_A0A1L8H921_XENLA_8355 and tr_A0A1L8HH81_A0A1L8HH81_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A226N304_A0A226N304_CALSU_9009 and tr_A0A226PFY6_A0A226PFY6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2KF21_A0A2A2KF21_9BILA_2018661 and tr_A0A2A2LE29_A0A2A2LE29_9BILA_2018661 are exactly identical! WARNING: Duplicate sequences found: 628 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.reduced.phy Alignment comprises 1 partitions and 77 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 77 / 77 Gaps: 0.46 % Invariant sites: 15.58 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 998 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 77 / 6160 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -62764.591855] Initial branch length optimization [00:00:01 -49460.309010] Model parameter optimization (eps = 10.000000) [00:00:23 -49162.745874] AUTODETECT spr round 1 (radius: 5) [00:01:42 -28288.028647] AUTODETECT spr round 2 (radius: 10) [00:03:02 -18829.836132] AUTODETECT spr round 3 (radius: 15) [00:04:27 -14316.108625] AUTODETECT spr round 4 (radius: 20) [00:05:57 -12245.701791] AUTODETECT spr round 5 (radius: 25) [00:07:35 -10532.129791] SPR radius for FAST iterations: 25 (autodetect) [00:07:35 -10532.129791] Model parameter optimization (eps = 3.000000) [00:08:04 -10523.211021] FAST spr round 1 (radius: 25) [00:09:24 -7999.464969] FAST spr round 2 (radius: 25) [00:10:38 -7673.097020] FAST spr round 3 (radius: 25) [00:11:49 -7624.402907] FAST spr round 4 (radius: 25) [00:13:02 -7426.626842] FAST spr round 5 (radius: 25) [00:14:12 -7358.101760] FAST spr round 6 (radius: 25) [00:15:18 -7358.101546] Model parameter optimization (eps = 1.000000) [00:15:30 -7353.295009] SLOW spr round 1 (radius: 5) [00:16:41 -7351.546943] SLOW spr round 2 (radius: 5) [00:17:51 -7350.776623] SLOW spr round 3 (radius: 5) [00:19:00 -7350.719672] SLOW spr round 4 (radius: 10) [00:20:16 -7294.608279] SLOW spr round 5 (radius: 5) [00:21:37 -7294.368736] SLOW spr round 6 (radius: 5) [00:22:48 -7294.368651] SLOW spr round 7 (radius: 10) [00:24:02 -7275.556697] SLOW spr round 8 (radius: 5) [00:25:24 -7275.556630] SLOW spr round 9 (radius: 10) [00:26:42 -7275.556567] SLOW spr round 10 (radius: 15) [00:28:16 -7267.593523] SLOW spr round 11 (radius: 5) [00:29:42 -7262.513597] SLOW spr round 12 (radius: 5) [00:30:57 -7262.513556] SLOW spr round 13 (radius: 10) [00:32:14 -7262.513508] SLOW spr round 14 (radius: 15) [00:33:42 -7262.513478] SLOW spr round 15 (radius: 20) [00:35:26 -7231.970349] SLOW spr round 16 (radius: 5) [00:36:47 -7161.328305] SLOW spr round 17 (radius: 5) [00:38:01 -7156.069263] SLOW spr round 18 (radius: 5) [00:39:09 -7153.587205] SLOW spr round 19 (radius: 5) [00:40:15 -7153.043078] SLOW spr round 20 (radius: 5) [00:41:21 -7152.875022] SLOW spr round 21 (radius: 5) [00:42:27 -7152.874999] SLOW spr round 22 (radius: 10) [00:43:39 -7152.647806] SLOW spr round 23 (radius: 5) [00:44:52 -7152.647483] SLOW spr round 24 (radius: 10) [00:46:02 -7152.647464] SLOW spr round 25 (radius: 15) [00:47:26 -7150.478657] SLOW spr round 26 (radius: 5) [00:48:45 -7088.111518] SLOW spr round 27 (radius: 5) [00:49:54 -7085.328178] SLOW spr round 28 (radius: 5) [00:50:20] [worker #1] ML tree search #2, logLikelihood: -6802.270924 [00:51:00 -7085.328170] SLOW spr round 29 (radius: 10) [00:52:08 -7085.328164] SLOW spr round 30 (radius: 15) [00:53:31 -7085.328162] SLOW spr round 31 (radius: 20) [00:55:03 -7085.328159] SLOW spr round 32 (radius: 25) [00:57:03 -7085.328157] Model parameter optimization (eps = 0.100000) [00:57:08] [worker #0] ML tree search #1, logLikelihood: -7085.245422 [00:57:08 -63061.817626] Initial branch length optimization [00:57:09 -49198.028495] Model parameter optimization (eps = 10.000000) [00:57:29 -48905.483510] AUTODETECT spr round 1 (radius: 5) [00:58:44 -28651.222507] AUTODETECT spr round 2 (radius: 10) [01:00:01 -19473.419973] AUTODETECT spr round 3 (radius: 15) [01:01:28 -14056.610905] AUTODETECT spr round 4 (radius: 20) [01:03:01 -11386.418450] AUTODETECT spr round 5 (radius: 25) [01:04:39 -9622.641579] SPR radius for FAST iterations: 25 (autodetect) [01:04:39 -9622.641579] Model parameter optimization (eps = 3.000000) [01:04:54 -9607.202093] FAST spr round 1 (radius: 25) [01:06:05 -7323.214210] FAST spr round 2 (radius: 25) [01:07:12 -7159.826535] FAST spr round 3 (radius: 25) [01:08:17 -7144.995768] FAST spr round 4 (radius: 25) [01:09:19 -7144.048299] FAST spr round 5 (radius: 25) [01:10:20 -7144.047136] Model parameter optimization (eps = 1.000000) [01:10:32 -7141.582465] SLOW spr round 1 (radius: 5) [01:11:40 -7141.565674] SLOW spr round 2 (radius: 10) [01:12:52 -7126.226442] SLOW spr round 3 (radius: 5) [01:14:08 -7109.849411] SLOW spr round 4 (radius: 5) [01:15:17 -7109.218483] SLOW spr round 5 (radius: 5) [01:16:23 -7109.217816] SLOW spr round 6 (radius: 10) [01:17:34 -7106.945060] SLOW spr round 7 (radius: 5) [01:18:49 -7104.516257] SLOW spr round 8 (radius: 5) [01:19:58 -7103.916783] SLOW spr round 9 (radius: 5) [01:21:04 -7103.916607] SLOW spr round 10 (radius: 10) [01:22:12 -7101.708266] SLOW spr round 11 (radius: 5) [01:23:24 -7099.973313] SLOW spr round 12 (radius: 5) [01:24:28 -7099.972416] SLOW spr round 13 (radius: 10) [01:25:35 -7099.972408] SLOW spr round 14 (radius: 15) [01:26:59 -7093.318300] SLOW spr round 15 (radius: 5) [01:28:13 -7093.318248] SLOW spr round 16 (radius: 10) [01:29:25 -7093.318244] SLOW spr round 17 (radius: 15) [01:30:56 -7093.318244] SLOW spr round 18 (radius: 20) [01:32:45 -7092.524310] SLOW spr round 19 (radius: 5) [01:33:16] [worker #1] ML tree search #4, logLikelihood: -8131.813286 [01:34:11 -7092.524309] SLOW spr round 20 (radius: 10) [01:35:33 -7092.524309] SLOW spr round 21 (radius: 15) [01:37:04 -7092.524309] SLOW spr round 22 (radius: 20) [01:38:54 -7092.524309] SLOW spr round 23 (radius: 25) [01:41:27 -7089.166820] SLOW spr round 24 (radius: 5) [01:42:54 -7088.560423] SLOW spr round 25 (radius: 5) [01:44:10 -7088.558873] SLOW spr round 26 (radius: 10) [01:45:29 -7048.451716] SLOW spr round 27 (radius: 5) [01:46:52 -7026.304816] SLOW spr round 28 (radius: 5) [01:48:05 -7026.304414] SLOW spr round 29 (radius: 10) [01:49:22 -7023.186074] SLOW spr round 30 (radius: 5) [01:50:42 -7023.186073] SLOW spr round 31 (radius: 10) [01:51:59 -7023.186073] SLOW spr round 32 (radius: 15) [01:53:28 -7023.186073] SLOW spr round 33 (radius: 20) [01:55:14 -7023.186073] SLOW spr round 34 (radius: 25) [01:57:35 -7023.186073] Model parameter optimization (eps = 0.100000) [01:57:48] [worker #0] ML tree search #3, logLikelihood: -7022.432272 [01:57:48 -63671.099093] Initial branch length optimization [01:57:49 -49537.095499] Model parameter optimization (eps = 10.000000) [01:58:20 -49226.924336] AUTODETECT spr round 1 (radius: 5) [01:59:42 -30186.693078] AUTODETECT spr round 2 (radius: 10) [02:01:15 -19879.075484] AUTODETECT spr round 3 (radius: 15) [02:02:43 -14619.375823] AUTODETECT spr round 4 (radius: 20) [02:04:22 -11266.487537] AUTODETECT spr round 5 (radius: 25) [02:06:18 -9636.957690] SPR radius for FAST iterations: 25 (autodetect) [02:06:18 -9636.957690] Model parameter optimization (eps = 3.000000) [02:06:36 -9624.820615] FAST spr round 1 (radius: 25) [02:07:54 -7547.913982] FAST spr round 2 (radius: 25) [02:09:03 -7210.572798] FAST spr round 3 (radius: 25) [02:10:13 -7165.874557] FAST spr round 4 (radius: 25) [02:11:22 -7150.947569] FAST spr round 5 (radius: 25) [02:12:28 -7150.730427] FAST spr round 6 (radius: 25) [02:13:34 -7150.595531] FAST spr round 7 (radius: 25) [02:14:40 -7150.595531] Model parameter optimization (eps = 1.000000) [02:14:54 -7148.340430] SLOW spr round 1 (radius: 5) [02:16:05 -7147.557042] SLOW spr round 2 (radius: 5) [02:17:16 -7146.978411] SLOW spr round 3 (radius: 5) [02:18:28 -7146.978120] SLOW spr round 4 (radius: 10) [02:19:45 -7143.367721] SLOW spr round 5 (radius: 5) [02:21:06 -7142.235433] SLOW spr round 6 (radius: 5) [02:22:21 -7141.769057] SLOW spr round 7 (radius: 5) [02:23:33 -7141.768958] SLOW spr round 8 (radius: 10) [02:24:50 -7141.768905] SLOW spr round 9 (radius: 15) [02:26:25 -7117.318483] SLOW spr round 10 (radius: 5) [02:27:49 -7117.318436] SLOW spr round 11 (radius: 10) [02:29:06] [worker #1] ML tree search #6, logLikelihood: -7061.919319 [02:29:09 -7116.841132] SLOW spr round 12 (radius: 5) [02:30:29 -7116.841085] SLOW spr round 13 (radius: 10) [02:31:45 -7116.841075] SLOW spr round 14 (radius: 15) [02:33:18 -7116.841064] SLOW spr round 15 (radius: 20) [02:35:11 -7100.411198] SLOW spr round 16 (radius: 5) [02:36:37 -7073.248098] SLOW spr round 17 (radius: 5) [02:37:55 -7072.304015] SLOW spr round 18 (radius: 5) [02:39:08 -7072.303706] SLOW spr round 19 (radius: 10) [02:40:24 -7068.723113] SLOW spr round 20 (radius: 5) [02:41:45 -7039.939507] SLOW spr round 21 (radius: 5) [02:42:58 -7037.894851] SLOW spr round 22 (radius: 5) [02:44:09 -7037.894742] SLOW spr round 23 (radius: 10) [02:45:23 -7037.894724] SLOW spr round 24 (radius: 15) [02:46:56 -7021.863597] SLOW spr round 25 (radius: 5) [02:48:19 -7014.024714] SLOW spr round 26 (radius: 5) [02:49:33 -7014.024700] SLOW spr round 27 (radius: 10) [02:50:48 -7014.024687] SLOW spr round 28 (radius: 15) [02:52:21 -7014.024679] SLOW spr round 29 (radius: 20) [02:54:06 -7014.024667] SLOW spr round 30 (radius: 25) [02:56:26 -7001.085021] SLOW spr round 31 (radius: 5) [02:57:51 -7001.085008] SLOW spr round 32 (radius: 10) [02:59:13 -7001.084997] SLOW spr round 33 (radius: 15) [03:00:44 -7001.084992] SLOW spr round 34 (radius: 20) [03:02:30 -7001.084989] SLOW spr round 35 (radius: 25) [03:04:49 -7001.084989] Model parameter optimization (eps = 0.100000) [03:04:55] [worker #0] ML tree search #5, logLikelihood: -7001.016206 [03:04:55 -62740.284443] Initial branch length optimization [03:04:56 -48741.257165] Model parameter optimization (eps = 10.000000) [03:05:26 -48418.897169] AUTODETECT spr round 1 (radius: 5) [03:06:47 -29202.772762] AUTODETECT spr round 2 (radius: 10) [03:08:11 -19093.846752] AUTODETECT spr round 3 (radius: 15) [03:09:43 -14165.461984] AUTODETECT spr round 4 (radius: 20) [03:11:24 -12256.200892] AUTODETECT spr round 5 (radius: 25) [03:13:16 -10735.967655] SPR radius for FAST iterations: 25 (autodetect) [03:13:16 -10735.967655] Model parameter optimization (eps = 3.000000) [03:13:31 -10715.410776] FAST spr round 1 (radius: 25) [03:14:50 -7482.794778] FAST spr round 2 (radius: 25) [03:16:06 -7173.429081] FAST spr round 3 (radius: 25) [03:17:17 -7021.175936] FAST spr round 4 (radius: 25) [03:18:27 -7015.570262] FAST spr round 5 (radius: 25) [03:19:35 -7015.000166] FAST spr round 6 (radius: 25) [03:20:42 -7014.999602] Model parameter optimization (eps = 1.000000) [03:20:52 -7014.264183] SLOW spr round 1 (radius: 5) [03:22:04 -7013.809590] SLOW spr round 2 (radius: 5) [03:23:16 -7013.806698] SLOW spr round 3 (radius: 10) [03:24:34 -6932.272456] SLOW spr round 4 (radius: 5) [03:25:53 -6927.873815] SLOW spr round 5 (radius: 5) [03:27:08 -6927.865837] SLOW spr round 6 (radius: 10) [03:28:26 -6927.865117] SLOW spr round 7 (radius: 15) [03:29:58 -6810.547491] SLOW spr round 8 (radius: 5) [03:31:23 -6808.610188] SLOW spr round 9 (radius: 5) [03:32:39 -6808.609819] SLOW spr round 10 (radius: 10) [03:33:56 -6808.609656] SLOW spr round 11 (radius: 15) [03:35:25 -6800.155509] SLOW spr round 12 (radius: 5) [03:36:49 -6800.155351] SLOW spr round 13 (radius: 10) [03:38:06 -6798.411594] SLOW spr round 14 (radius: 5) [03:39:24 -6797.681147] SLOW spr round 15 (radius: 5) [03:40:36 -6797.681090] SLOW spr round 16 (radius: 10) [03:41:50 -6797.681079] SLOW spr round 17 (radius: 15) [03:43:19 -6797.681073] SLOW spr round 18 (radius: 20) [03:45:03 -6796.603597] SLOW spr round 19 (radius: 5) [03:46:28 -6796.603564] SLOW spr round 20 (radius: 10) [03:47:47 -6796.603543] SLOW spr round 21 (radius: 15) [03:49:16 -6796.197783] SLOW spr round 22 (radius: 5) [03:50:38 -6796.197755] SLOW spr round 23 (radius: 10) [03:51:15] [worker #1] ML tree search #8, logLikelihood: -6853.186132 [03:51:55 -6796.197745] SLOW spr round 24 (radius: 15) [03:53:24 -6796.197739] SLOW spr round 25 (radius: 20) [03:55:10 -6796.197729] SLOW spr round 26 (radius: 25) [03:57:29 -6796.197724] Model parameter optimization (eps = 0.100000) [03:57:35] [worker #0] ML tree search #7, logLikelihood: -6796.112434 [03:57:35 -63403.256949] Initial branch length optimization [03:57:36 -49284.639879] Model parameter optimization (eps = 10.000000) [03:58:13 -48992.755794] AUTODETECT spr round 1 (radius: 5) [03:59:33 -28815.090637] AUTODETECT spr round 2 (radius: 10) [04:00:56 -18855.293997] AUTODETECT spr round 3 (radius: 15) [04:02:25 -13299.837113] AUTODETECT spr round 4 (radius: 20) [04:04:07 -10378.298668] AUTODETECT spr round 5 (radius: 25) [04:06:26 -8897.195209] SPR radius for FAST iterations: 25 (autodetect) [04:06:26 -8897.195209] Model parameter optimization (eps = 3.000000) [04:06:41 -8876.038989] FAST spr round 1 (radius: 25) [04:08:02 -7170.762253] FAST spr round 2 (radius: 25) [04:09:11 -6966.740320] FAST spr round 3 (radius: 25) [04:10:21 -6913.242472] FAST spr round 4 (radius: 25) [04:11:30 -6854.092434] FAST spr round 5 (radius: 25) [04:12:36 -6854.091843] Model parameter optimization (eps = 1.000000) [04:12:42 -6853.547704] SLOW spr round 1 (radius: 5) [04:13:55 -6852.020250] SLOW spr round 2 (radius: 5) [04:15:05 -6852.012528] SLOW spr round 3 (radius: 10) [04:16:22 -6847.788917] SLOW spr round 4 (radius: 5) [04:17:42 -6845.127191] SLOW spr round 5 (radius: 5) [04:18:55 -6845.127099] SLOW spr round 6 (radius: 10) [04:20:11 -6845.127077] SLOW spr round 7 (radius: 15) [04:21:43 -6819.317166] SLOW spr round 8 (radius: 5) [04:23:08 -6819.317108] SLOW spr round 9 (radius: 10) [04:24:29 -6813.245713] SLOW spr round 10 (radius: 5) [04:25:47 -6813.219343] SLOW spr round 11 (radius: 10) [04:27:03 -6813.219335] SLOW spr round 12 (radius: 15) [04:28:16] [worker #1] ML tree search #10, logLikelihood: -6801.811065 [04:28:36 -6813.219333] SLOW spr round 13 (radius: 20) [04:30:36 -6811.252709] SLOW spr round 14 (radius: 5) [04:32:02 -6811.078211] SLOW spr round 15 (radius: 5) [04:33:19 -6810.512882] SLOW spr round 16 (radius: 5) [04:34:31 -6810.512879] SLOW spr round 17 (radius: 10) [04:35:46 -6810.512877] SLOW spr round 18 (radius: 15) [04:37:20 -6810.512874] SLOW spr round 19 (radius: 20) [04:39:18 -6810.512872] SLOW spr round 20 (radius: 25) [04:42:09 -6810.512869] Model parameter optimization (eps = 0.100000) [04:42:19] [worker #0] ML tree search #9, logLikelihood: -6810.410027 [04:42:19 -64313.771751] Initial branch length optimization [04:42:20 -49732.893311] Model parameter optimization (eps = 10.000000) [04:42:49 -49447.443505] AUTODETECT spr round 1 (radius: 5) [04:44:11 -28536.192855] AUTODETECT spr round 2 (radius: 10) [04:45:35 -17508.287590] AUTODETECT spr round 3 (radius: 15) [04:47:02 -12626.384757] AUTODETECT spr round 4 (radius: 20) [04:48:38 -11396.240872] AUTODETECT spr round 5 (radius: 25) [04:50:29 -10808.928586] SPR radius for FAST iterations: 25 (autodetect) [04:50:29 -10808.928586] Model parameter optimization (eps = 3.000000) [04:50:45 -10788.031592] FAST spr round 1 (radius: 25) [04:52:00 -8592.666469] FAST spr round 2 (radius: 25) [04:53:09 -8449.465454] FAST spr round 3 (radius: 25) [04:54:16 -8388.757024] FAST spr round 4 (radius: 25) [04:55:24 -8344.654446] FAST spr round 5 (radius: 25) [04:56:30 -8339.770815] FAST spr round 6 (radius: 25) [04:57:35 -8339.770796] Model parameter optimization (eps = 1.000000) [04:57:48 -8335.562761] SLOW spr round 1 (radius: 5) [04:59:01 -8333.322499] SLOW spr round 2 (radius: 5) [05:00:11 -8333.322464] SLOW spr round 3 (radius: 10) [05:01:25 -8332.973311] SLOW spr round 4 (radius: 5) [05:02:46 -8329.238376] SLOW spr round 5 (radius: 5) [05:03:59 -8329.230692] SLOW spr round 6 (radius: 10) [05:05:13 -8329.230204] SLOW spr round 7 (radius: 15) [05:06:43 -8328.262144] SLOW spr round 8 (radius: 5) [05:08:07 -8326.147440] SLOW spr round 9 (radius: 5) [05:09:23 -8326.147440] SLOW spr round 10 (radius: 10) [05:10:37 -8326.147437] SLOW spr round 11 (radius: 15) [05:12:15 -8326.147437] SLOW spr round 12 (radius: 20) [05:14:33 -8234.516024] SLOW spr round 13 (radius: 5) [05:16:10 -7904.727019] SLOW spr round 14 (radius: 5) [05:17:39 -7530.604755] SLOW spr round 15 (radius: 5) [05:19:02 -7477.451317] SLOW spr round 16 (radius: 5) [05:20:20 -7477.312890] SLOW spr round 17 (radius: 5) [05:21:38 -7476.920956] SLOW spr round 18 (radius: 5) [05:22:50 -7476.920944] SLOW spr round 19 (radius: 10) [05:24:05 -7319.668537] SLOW spr round 20 (radius: 5) [05:25:26 -7206.995062] SLOW spr round 21 (radius: 5) [05:26:40 -7206.994860] SLOW spr round 22 (radius: 10) [05:27:52 -7206.994859] SLOW spr round 23 (radius: 15) [05:29:23 -7063.399760] SLOW spr round 24 (radius: 5) [05:30:47 -6986.601620] SLOW spr round 25 (radius: 5) [05:32:03 -6982.116823] SLOW spr round 26 (radius: 5) [05:33:15 -6980.046768] SLOW spr round 27 (radius: 5) [05:34:25 -6980.046728] SLOW spr round 28 (radius: 10) [05:35:40 -6947.448662] SLOW spr round 29 (radius: 5) [05:37:00 -6928.151798] SLOW spr round 30 (radius: 5) [05:38:14 -6926.242104] SLOW spr round 31 (radius: 5) [05:39:24 -6926.242007] SLOW spr round 32 (radius: 10) [05:40:37 -6926.241986] SLOW spr round 33 (radius: 15) [05:42:07 -6908.912504] SLOW spr round 34 (radius: 5) [05:43:28 -6908.912499] SLOW spr round 35 (radius: 10) [05:44:44 -6908.912499] SLOW spr round 36 (radius: 15) [05:45:32] [worker #1] ML tree search #12, logLikelihood: -6930.863395 [05:46:14 -6908.815546] SLOW spr round 37 (radius: 20) [05:48:00 -6902.482610] SLOW spr round 38 (radius: 5) [05:49:24 -6902.482598] SLOW spr round 39 (radius: 10) [05:50:45 -6902.200502] SLOW spr round 40 (radius: 5) [05:52:02 -6902.198405] SLOW spr round 41 (radius: 10) [05:53:17 -6902.198125] SLOW spr round 42 (radius: 15) [05:54:46 -6902.198086] SLOW spr round 43 (radius: 20) [05:56:34 -6902.198081] SLOW spr round 44 (radius: 25) [05:58:55 -6901.514761] SLOW spr round 45 (radius: 5) [06:00:22 -6896.275114] SLOW spr round 46 (radius: 5) [06:01:40 -6896.275105] SLOW spr round 47 (radius: 10) [06:02:56 -6896.275105] SLOW spr round 48 (radius: 15) [06:04:28 -6896.275105] SLOW spr round 49 (radius: 20) [06:06:15 -6896.275105] SLOW spr round 50 (radius: 25) [06:08:37 -6896.275105] Model parameter optimization (eps = 0.100000) [06:08:48] [worker #0] ML tree search #11, logLikelihood: -6895.804866 [06:08:48 -64132.554374] Initial branch length optimization [06:08:50 -50108.455866] Model parameter optimization (eps = 10.000000) [06:09:14 -49838.478038] AUTODETECT spr round 1 (radius: 5) [06:10:36 -29206.929224] AUTODETECT spr round 2 (radius: 10) [06:12:11 -18550.956360] AUTODETECT spr round 3 (radius: 15) [06:13:40 -13811.070439] AUTODETECT spr round 4 (radius: 20) [06:15:23 -11357.569677] AUTODETECT spr round 5 (radius: 25) [06:17:14 -9908.952329] SPR radius for FAST iterations: 25 (autodetect) [06:17:14 -9908.952329] Model parameter optimization (eps = 3.000000) [06:17:29 -9890.312857] FAST spr round 1 (radius: 25) [06:18:48 -7794.939012] FAST spr round 2 (radius: 25) [06:20:02 -7624.875266] FAST spr round 3 (radius: 25) [06:21:15 -7619.200015] FAST spr round 4 (radius: 25) [06:22:24 -7619.199872] Model parameter optimization (eps = 1.000000) [06:22:37 -7616.666626] SLOW spr round 1 (radius: 5) [06:23:51 -7613.988645] SLOW spr round 2 (radius: 5) [06:25:05 -7611.951136] SLOW spr round 3 (radius: 5) [06:26:18 -7608.482792] SLOW spr round 4 (radius: 5) [06:27:30 -7608.481991] SLOW spr round 5 (radius: 10) [06:28:47 -7573.585733] SLOW spr round 6 (radius: 5) [06:30:11 -7554.495542] SLOW spr round 7 (radius: 5) [06:31:27 -7538.629635] SLOW spr round 8 (radius: 5) [06:32:38 -7538.629633] SLOW spr round 9 (radius: 10) [06:33:53 -7538.629605] SLOW spr round 10 (radius: 15) [06:35:29 -7535.494532] SLOW spr round 11 (radius: 5) [06:36:53 -7535.494406] SLOW spr round 12 (radius: 10) [06:38:14 -7534.953637] SLOW spr round 13 (radius: 5) [06:39:35 -7534.953599] SLOW spr round 14 (radius: 10) [06:40:51 -7534.953599] SLOW spr round 15 (radius: 15) [06:42:27 -7534.953599] SLOW spr round 16 (radius: 20) [06:44:07 -7534.953599] SLOW spr round 17 (radius: 25) [06:46:07 -7519.060009] SLOW spr round 18 (radius: 5) [06:47:35 -7504.701530] SLOW spr round 19 (radius: 5) [06:48:53 -7502.629272] SLOW spr round 20 (radius: 5) [06:50:06 -7502.629269] SLOW spr round 21 (radius: 10) [06:51:21 -7502.629269] SLOW spr round 22 (radius: 15) [06:52:56 -7502.629269] SLOW spr round 23 (radius: 20) [06:54:34 -7502.629269] SLOW spr round 24 (radius: 25) [06:56:33 -7502.629269] Model parameter optimization (eps = 0.100000) [06:56:37] [worker #0] ML tree search #13, logLikelihood: -7502.621002 [06:56:37 -63319.478864] Initial branch length optimization [06:56:38 -48978.203525] Model parameter optimization (eps = 10.000000) [06:57:03 -48743.978343] AUTODETECT spr round 1 (radius: 5) [06:58:25 -28648.085954] AUTODETECT spr round 2 (radius: 10) [06:59:49 -18915.739752] AUTODETECT spr round 3 (radius: 15) [07:01:16 -12964.679478] AUTODETECT spr round 4 (radius: 20) [07:02:53 -10816.116237] AUTODETECT spr round 5 (radius: 25) [07:04:42 -9232.194047] SPR radius for FAST iterations: 25 (autodetect) [07:04:42 -9232.194047] Model parameter optimization (eps = 3.000000) [07:04:54 -9214.323444] FAST spr round 1 (radius: 25) [07:06:11 -7086.647079] FAST spr round 2 (radius: 25) [07:07:21 -6953.034463] FAST spr round 3 (radius: 25) [07:07:27] [worker #1] ML tree search #14, logLikelihood: -6868.064995 [07:08:30 -6928.811712] FAST spr round 4 (radius: 25) [07:09:37 -6928.623196] FAST spr round 5 (radius: 25) [07:10:42 -6928.623181] Model parameter optimization (eps = 1.000000) [07:10:55 -6926.686561] SLOW spr round 1 (radius: 5) [07:12:08 -6923.591493] SLOW spr round 2 (radius: 5) [07:13:19 -6923.572123] SLOW spr round 3 (radius: 10) [07:14:34 -6923.571086] SLOW spr round 4 (radius: 15) [07:16:04 -6919.571836] SLOW spr round 5 (radius: 5) [07:17:29 -6912.674623] SLOW spr round 6 (radius: 5) [07:18:43 -6912.674492] SLOW spr round 7 (radius: 10) [07:19:58 -6908.590498] SLOW spr round 8 (radius: 5) [07:21:17 -6907.930821] SLOW spr round 9 (radius: 5) [07:22:30 -6907.928707] SLOW spr round 10 (radius: 10) [07:23:44 -6907.928418] SLOW spr round 11 (radius: 15) [07:25:14 -6907.928373] SLOW spr round 12 (radius: 20) [07:26:55 -6906.102798] SLOW spr round 13 (radius: 5) [07:28:21 -6906.102797] SLOW spr round 14 (radius: 10) [07:29:43 -6905.961019] SLOW spr round 15 (radius: 5) [07:31:00 -6905.961019] SLOW spr round 16 (radius: 10) [07:32:16 -6905.961019] SLOW spr round 17 (radius: 15) [07:33:45 -6905.961019] SLOW spr round 18 (radius: 20) [07:35:25 -6905.961019] SLOW spr round 19 (radius: 25) [07:37:37 -6903.234114] SLOW spr round 20 (radius: 5) [07:39:04 -6902.737039] SLOW spr round 21 (radius: 5) [07:40:21 -6902.736711] SLOW spr round 22 (radius: 10) [07:41:35 -6902.736680] SLOW spr round 23 (radius: 15) [07:43:04 -6902.736674] SLOW spr round 24 (radius: 20) [07:44:43 -6902.736673] SLOW spr round 25 (radius: 25) [07:46:52 -6902.736673] Model parameter optimization (eps = 0.100000) [07:46:59] [worker #0] ML tree search #15, logLikelihood: -6902.548979 [07:46:59 -64291.644664] Initial branch length optimization [07:47:00 -50084.093668] Model parameter optimization (eps = 10.000000) [07:47:31 -49849.280576] AUTODETECT spr round 1 (radius: 5) [07:48:52 -29405.672545] AUTODETECT spr round 2 (radius: 10) [07:50:14 -18474.934536] AUTODETECT spr round 3 (radius: 15) [07:51:43 -13297.943305] AUTODETECT spr round 4 (radius: 20) [07:53:14 -11085.869414] AUTODETECT spr round 5 (radius: 25) [07:55:00 -9472.739380] SPR radius for FAST iterations: 25 (autodetect) [07:55:00 -9472.739380] Model parameter optimization (eps = 3.000000) [07:55:11 -9462.330550] FAST spr round 1 (radius: 25) [07:56:25 -7402.746969] FAST spr round 2 (radius: 25) [07:57:35 -7127.236380] FAST spr round 3 (radius: 25) [07:58:43 -7083.842079] FAST spr round 4 (radius: 25) [07:59:49 -7081.330209] FAST spr round 5 (radius: 25) [08:00:55 -7080.568163] FAST spr round 6 (radius: 25) [08:02:00 -7080.566370] Model parameter optimization (eps = 1.000000) [08:02:12 -7074.334807] SLOW spr round 1 (radius: 5) [08:03:22 -7073.265407] SLOW spr round 2 (radius: 5) [08:04:30 -7073.263817] SLOW spr round 3 (radius: 10) [08:05:44 -7070.147757] SLOW spr round 4 (radius: 5) [08:07:02 -7064.941667] SLOW spr round 5 (radius: 5) [08:08:13 -7064.933921] SLOW spr round 6 (radius: 10) [08:09:25 -7064.379026] SLOW spr round 7 (radius: 5) [08:10:42 -7064.378836] SLOW spr round 8 (radius: 10) [08:11:55 -7063.950013] SLOW spr round 9 (radius: 5) [08:13:12 -7063.950012] SLOW spr round 10 (radius: 10) [08:14:24 -7063.950012] SLOW spr round 11 (radius: 15) [08:15:54 -7062.543234] SLOW spr round 12 (radius: 5) [08:17:02] [worker #1] ML tree search #16, logLikelihood: -6866.963272 [08:17:18 -7062.542441] SLOW spr round 13 (radius: 10) [08:18:42 -7062.542417] SLOW spr round 14 (radius: 15) [08:20:20 -7062.542416] SLOW spr round 15 (radius: 20) [08:22:14 -7062.327588] SLOW spr round 16 (radius: 5) [08:23:45 -7062.327588] SLOW spr round 17 (radius: 10) [08:25:14 -7056.132966] SLOW spr round 18 (radius: 5) [08:26:42 -7032.943958] SLOW spr round 19 (radius: 5) [08:28:02 -7032.426434] SLOW spr round 20 (radius: 5) [08:29:18 -7032.426406] SLOW spr round 21 (radius: 10) [08:30:38 -7032.426404] SLOW spr round 22 (radius: 15) [08:32:20 -7030.978818] SLOW spr round 23 (radius: 5) [08:33:49 -7030.978632] SLOW spr round 24 (radius: 10) [08:35:14 -7030.978553] SLOW spr round 25 (radius: 15) [08:36:53 -7030.978512] SLOW spr round 26 (radius: 20) [08:38:45 -7030.978491] SLOW spr round 27 (radius: 25) [08:41:08 -7024.809576] SLOW spr round 28 (radius: 5) [08:42:40 -7024.809570] SLOW spr round 29 (radius: 10) [08:44:09 -7024.809567] SLOW spr round 30 (radius: 15) [08:45:48 -7024.809566] SLOW spr round 31 (radius: 20) [08:47:42 -7024.809565] SLOW spr round 32 (radius: 25) [08:50:08 -7024.809565] Model parameter optimization (eps = 0.100000) [08:50:17] [worker #0] ML tree search #17, logLikelihood: -7024.637129 [08:50:17 -64008.466702] Initial branch length optimization [08:50:19 -49664.000067] Model parameter optimization (eps = 10.000000) [08:50:45 -49428.363105] AUTODETECT spr round 1 (radius: 5) [08:52:16 -27412.573397] AUTODETECT spr round 2 (radius: 10) [08:53:46 -18442.390552] AUTODETECT spr round 3 (radius: 15) [08:55:23 -12552.591460] AUTODETECT spr round 4 (radius: 20) [08:57:10 -11277.302011] AUTODETECT spr round 5 (radius: 25) [08:59:08 -10051.869285] SPR radius for FAST iterations: 25 (autodetect) [08:59:08 -10051.869285] Model parameter optimization (eps = 3.000000) [08:59:24 -10038.341064] FAST spr round 1 (radius: 25) [09:00:50 -7571.310139] FAST spr round 2 (radius: 25) [09:02:11 -7298.224681] FAST spr round 3 (radius: 25) [09:03:28 -7194.489320] FAST spr round 4 (radius: 25) [09:04:46 -7093.123584] FAST spr round 5 (radius: 25) [09:06:05 -6930.319565] FAST spr round 6 (radius: 25) [09:07:23 -6895.200891] FAST spr round 7 (radius: 25) [09:08:36 -6894.337916] FAST spr round 8 (radius: 25) [09:09:50 -6894.337905] Model parameter optimization (eps = 1.000000) [09:10:02 -6892.207136] SLOW spr round 1 (radius: 5) [09:11:23 -6888.510032] SLOW spr round 2 (radius: 5) [09:12:42 -6888.508982] SLOW spr round 3 (radius: 10) [09:14:05 -6888.022552] SLOW spr round 4 (radius: 5) [09:15:34 -6885.530861] SLOW spr round 5 (radius: 5) [09:16:55 -6885.345434] SLOW spr round 6 (radius: 5) [09:18:13 -6885.345390] SLOW spr round 7 (radius: 10) [09:19:35 -6884.885684] SLOW spr round 8 (radius: 5) [09:21:02 -6884.885611] SLOW spr round 9 (radius: 10) [09:22:25 -6847.318452] SLOW spr round 10 (radius: 5) [09:23:52 -6834.655438] SLOW spr round 11 (radius: 5) [09:25:12 -6833.363779] SLOW spr round 12 (radius: 5) [09:26:31 -6833.363772] SLOW spr round 13 (radius: 10) [09:27:52 -6833.363772] SLOW spr round 14 (radius: 15) [09:29:29 -6833.015505] SLOW spr round 15 (radius: 5) [09:30:59 -6832.404883] SLOW spr round 16 (radius: 5) [09:32:20 -6832.404883] SLOW spr round 17 (radius: 10) [09:33:42 -6832.404883] SLOW spr round 18 (radius: 15) [09:35:18 -6832.404883] SLOW spr round 19 (radius: 20) [09:37:04 -6829.819454] SLOW spr round 20 (radius: 5) [09:38:37 -6826.671383] SLOW spr round 21 (radius: 5) [09:40:00 -6826.671381] SLOW spr round 22 (radius: 10) [09:41:23 -6826.671381] SLOW spr round 23 (radius: 15) [09:43:00 -6826.671381] SLOW spr round 24 (radius: 20) [09:44:44 -6826.671381] SLOW spr round 25 (radius: 25) [09:46:44 -6824.759312] SLOW spr round 26 (radius: 5) [09:48:21 -6824.147460] SLOW spr round 27 (radius: 5) [09:49:48 -6823.658020] SLOW spr round 28 (radius: 5) [09:51:10 -6823.484357] SLOW spr round 29 (radius: 5) [09:52:30 -6823.484278] SLOW spr round 30 (radius: 10) [09:53:54 -6819.884608] SLOW spr round 31 (radius: 5) [09:55:22 -6819.725212] SLOW spr round 32 (radius: 5) [09:56:42 -6819.725155] SLOW spr round 33 (radius: 10) [09:58:05 -6819.725152] SLOW spr round 34 (radius: 15) [09:59:43 -6818.691494] SLOW spr round 35 (radius: 5) [10:01:16 -6818.691494] SLOW spr round 36 (radius: 10) [10:02:41 -6818.691494] SLOW spr round 37 (radius: 15) [10:04:18 -6818.691494] SLOW spr round 38 (radius: 20) [10:06:02 -6818.691494] SLOW spr round 39 (radius: 25) [10:07:59 -6818.691494] Model parameter optimization (eps = 0.100000) [10:08:13] [worker #0] ML tree search #19, logLikelihood: -6817.948171 [10:30:11] [worker #1] ML tree search #18, logLikelihood: -7297.132613 [11:09:48] [worker #1] ML tree search #20, logLikelihood: -9041.734725 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.400812,0.208587) (0.273481,0.393546) (0.221798,1.673572) (0.103908,4.211142) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -6796.112434 AIC score: 17590.224869 / AICc score: 8013590.224869 / BIC score: 22275.491907 Free parameters (model + branch lengths): 1999 WARNING: Number of free parameters (K=1999) is larger than alignment size (n=77). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 625 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35716/3_mltree/P35716.raxml.log Analysis started: 30-Jun-2021 17:22:36 / finished: 01-Jul-2021 04:32:25 Elapsed time: 40189.284 seconds Consumed energy: 3394.565 Wh (= 17 km in an electric car, or 85 km with an e-scooter!)