RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 08-Jul-2021 00:41:01 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/2_msa/P35711_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/2_msa/P35711_trimmed_msa.fasta [00:00:00] Loaded alignment with 991 taxa and 77 sites WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_Q59DN5_Q59DN5_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B4JZU8_B4JZU8_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B4IIZ1_B4IIZ1_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_A0A0R3NW38_A0A0R3NW38_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B4NHW3_B4NHW3_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B3MZZ5_B3MZZ5_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B4HC86_B4HC86_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_A0A0Q9WWS9_A0A0Q9WWS9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_D0Z7E7_D0Z7E7_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_B4L7A4_B4L7A4_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4R2H2_B4R2H2_DROSI_7240 and tr_A0A0M5J0Q1_A0A0M5J0Q1_DROBS_30019 are exactly identical! WARNING: Sequences tr_E9FRD3_E9FRD3_DAPPU_6669 and tr_A0A162EDL1_A0A162EDL1_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9G865_E9G865_DAPPU_6669 and tr_A0A0P4WVB9_A0A0P4WVB9_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_B7QL61_B7QL61_IXOSC_6945 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_A0A087ZRP5_A0A087ZRP5_APIME_7460 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_A0A0M9A5M1_A0A0M9A5M1_9HYME_166423 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_A0A154P4E5_A0A154P4E5_9HYME_178035 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_A0A1D2N4P8_A0A1D2N4P8_ORCCI_48709 are exactly identical! WARNING: Sequences tr_E2ANZ1_E2ANZ1_CAMFO_104421 and tr_A0A2A3EP81_A0A2A3EP81_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_M4A334_M4A334_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_W5K738_W5K738_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A096MBG9_A0A096MBG9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A0N8JWA3_A0A0N8JWA3_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A2D0PIH8_A0A2D0PIH8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A2D0PJZ1_A0A2D0PJZ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A2D0PLN8_A0A2D0PLN8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0R4IMW9_A0A0R4IMW9_DANRE_7955 and tr_A0A2D0PMN1_A0A2D0PMN1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0R4IQD2_A0A0R4IQD2_DANRE_7955 and tr_F7DGV9_F7DGV9_ORNAN_9258 are exactly identical! WARNING: Sequences tr_B3DJE0_B3DJE0_DANRE_7955 and tr_A0A1S3MZN3_A0A1S3MZN3_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DJE0_B3DJE0_DANRE_7955 and tr_A0A1S3SGM6_A0A1S3SGM6_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DJE0_B3DJE0_DANRE_7955 and tr_A0A1L8GQC7_A0A1L8GQC7_XENLA_8355 are exactly identical! WARNING: Sequences tr_B3DJE0_B3DJE0_DANRE_7955 and tr_A0A1L8GVX2_A0A1L8GVX2_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_C3VV16_C3VV16_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_M4AYX6_M4AYX6_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_W5NLJ8_W5NLJ8_LEPOC_7918 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A087YSU3_A0A087YSU3_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A0N8JXW7_A0A0N8JXW7_9TELE_113540 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A1S3KK65_A0A1S3KK65_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2I4AI34_A0A2I4AI34_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A060Y4B1_A0A060Y4B1_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2D0RWN4_A0A2D0RWN4_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2U9C5L8_A0A2U9C5L8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1D5PBR4_A0A1D5PBR4_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_M3Y0P3_M3Y0P3_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H2PI18_H2PI18_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_W5PIE5_W5PIE5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H0W7J3_H0W7J3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3UE81_G3UE81_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3WBV5_G3WBV5_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_H3A415_H3A415_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G1LXC4_G1LXC4_AILME_9646 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_G3MYL8_G3MYL8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_L5KUT2_L5KUT2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_U3KGF4_U3KGF4_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_W5NP80_W5NP80_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A0Q3XB15_A0A0Q3XB15_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1S3GP47_A0A1S3GP47_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1U7UGJ3_A0A1U7UGJ3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A1V4JGP2_A0A1V4JGP2_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A218V0M4_A0A218V0M4_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A226NKP4_A0A226NKP4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2R9C575_A0A2R9C575_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A2Y9RRA2_A0A2Y9RRA2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q6P0Z4_Q6P0Z4_DANRE_7955 and tr_A0A384BC17_A0A384BC17_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_M3YK79_M3YK79_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_M4AYS5_M4AYS5_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_I3KZ58_I3KZ58_ORENI_8128 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A3B5KJ66_A0A3B5KJ66_TAKRU_31033 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_G3NJA1_G3NJA1_GASAC_69293 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A087YQH6_A0A087YQH6_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A091E5I3_A0A091E5I3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1S3P074_A0A1S3P074_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1S3PMG1_A0A1S3PMG1_SALSA_8030 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A1U8CAT8_A0A1U8CAT8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2I4CFI5_A0A2I4CFI5_9TELE_52670 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A060WTL2_A0A060WTL2_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A060ZA93_A0A060ZA93_ONCMY_8022 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U3YIU1_A0A2U3YIU1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2U9CAD7_A0A2U9CAD7_SCOMX_52904 are exactly identical! WARNING: Sequences sp_Q6RVD7_SX21B_DANRE_7955 and tr_A0A2Y9DCE7_A0A2Y9DCE7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A3B3H670_A0A3B3H670_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_W5NJA6_W5NJA6_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A087XVX1_A0A087XVX1_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A0P7XLU6_A0A0P7XLU6_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A2I4C2V8_A0A2I4C2V8_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q6TEN5_Q6TEN5_DANRE_7955 and tr_A0A2U9CTF7_A0A2U9CTF7_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_W5LT86_W5LT86_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_W5NPA7_W5NPA7_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A1S3LBS2_A0A1S3LBS2_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A1S3P5I8_A0A1S3P5I8_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A060WIJ8_A0A060WIJ8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q7SZW4_Q7SZW4_DANRE_7955 and tr_A0A060Y709_A0A060Y709_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9DFH1_Q9DFH1_DANRE_7955 and tr_A0A3B1KI07_A0A3B1KI07_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q9DFH1_Q9DFH1_DANRE_7955 and tr_A0A060YYC0_A0A060YYC0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q9DFH1_Q9DFH1_DANRE_7955 and tr_A0A2D0QA56_A0A2D0QA56_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_M4ACG0_M4ACG0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_H2VEF0_H2VEF0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_H3C5T1_H3C5T1_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_H3CPN6_H3CPN6_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_A0A087XTM4_A0A087XTM4_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q9DFH2_Q9DFH2_DANRE_7955 and tr_A0A2I4BCP3_A0A2I4BCP3_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A1D5NZD9_A0A1D5NZD9_CHICK_9031 and tr_H0ZLA1_H0ZLA1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5NZD9_A0A1D5NZD9_CHICK_9031 and tr_U3JVA2_U3JVA2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5NZD9_A0A1D5NZD9_CHICK_9031 and tr_A0A218VCP0_A0A218VCP0_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and sp_P40645_SOX6_MOUSE_10090 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_M3YPC7_M3YPC7_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1S7L5_G1S7L5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1PAC5_G1PAC5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G3R5N3_G3R5N3_GORGO_9595 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H2NE10_H2NE10_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and sp_Q5RCU4_SOX6_PONAB_9601 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1N4R1_G1N4R1_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1KMW4_G1KMW4_ANOCA_28377 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1T3L1_G1T3L1_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F6UQM4_F6UQM4_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H2R284_H2R284_PANTR_9598 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F6TCG8_F6TCG8_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F6WCR8_F6WCR8_MONDO_13616 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F7DPY5_F7DPY5_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_W5P736_W5P736_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A0G2JTZ2_A0A0G2JTZ2_RAT_10116 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_I3MLC0_I3MLC0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H0WRW4_H0WRW4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H0VKN3_H0VKN3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and sp_P35712_SOX6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F7H4A5_F7H4A5_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G5ANG7_G5ANG7_HETGA_10181 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_K7FQ38_K7FQ38_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G3VWC8_G3VWC8_SARHA_9305 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H0ZDZ4_H0ZDZ4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_F7FX62_F7FX62_CALJA_9483 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A287BJ25_A0A287BJ25_PIG_9823 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_H3BDZ0_H3BDZ0_LATCH_7897 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G1M9A1_G1M9A1_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_G7PQM9_G7PQM9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_E1BE01_E1BE01_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_L5L5Y9_L5L5Y9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2I2UU75_A0A2I2UU75_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_U3JDI4_U3JDI4_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_U3IME8_U3IME8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_W5KGE7_W5KGE7_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2I3N9Z5_A0A2I3N9Z5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091CLJ6_A0A091CLJ6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A0D9QXI8_A0A0D9QXI8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A151MC57_A0A151MC57_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A0Q3TZX7_A0A0Q3TZX7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091ED93_A0A091ED93_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091IZU2_A0A091IZU2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A093PYY3_A0A093PYY3_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091UMB9_A0A091UMB9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A087RK74_A0A087RK74_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A093HXK7_A0A093HXK7_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091W6I7_A0A091W6I7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091GCG9_A0A091GCG9_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A0A0AZE3_A0A0A0AZE3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2I0MIB1_A0A2I0MIB1_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A093GVQ9_A0A093GVQ9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A091HNK3_A0A091HNK3_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1S3AEL3_A0A1S3AEL3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1S3GNP5_A0A1S3GNP5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1L8GIA5_A0A1L8GIA5_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_J7M5I3_J7M5I3_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1U7TC89_A0A1U7TC89_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A3Q0G431_A0A3Q0G431_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1U8C3M3_A0A1U8C3M3_MESAU_10036 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A1V4JNT1_A0A1V4JNT1_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A218UU28_A0A218UU28_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2K5NCM9_A0A2K5NCM9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2K6AW57_A0A2K6AW57_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2K5Z3M0_A0A2K5Z3M0_MANLE_9568 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2R9BNC8_A0A2R9BNC8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2U4CF42_A0A2U4CF42_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2U3ZX96_A0A2U3ZX96_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2U3YB20_A0A2U3YB20_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2Y9RP12_A0A2Y9RP12_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2Y9JNH7_A0A2Y9JNH7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2Y9LWT3_A0A2Y9LWT3_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A2Y9SEM4_A0A2Y9SEM4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A384DJ78_A0A384DJ78_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1NAU5_F1NAU5_CHICK_9031 and tr_A0A383ZJA2_A0A383ZJA2_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_G1MUR6_G1MUR6_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_F6PTE3_F6PTE3_ORNAN_9258 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_K7FL61_K7FL61_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A151NBV0_A0A151NBV0_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A091V4W5_A0A091V4W5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A087QPR6_A0A087QPR6_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A093HLN6_A0A093HLN6_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A091G3B9_A0A091G3B9_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A0A0APY6_A0A0A0APY6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A2I0LIC5_A0A2I0LIC5_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A1U8DWZ8_A0A1U8DWZ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A1V4KX19_A0A1V4KX19_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A226NHQ2_A0A226NHQ2_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NJ38_F1NJ38_CHICK_9031 and tr_A0A226PYI0_A0A226PYI0_COLVI_9014 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_Q7M6Y2_SOX11_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H9GHI5_H9GHI5_ANOCA_28377 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G1TFU0_G1TFU0_RABIT_9986 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I3TNT6_A0A2I3TNT6_PANTR_9598 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_F7ASQ9_F7ASQ9_MONDO_13616 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_W5PYZ6_W5PYZ6_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_P0C1G9_SOX11_RAT_10116 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0XGP9_H0XGP9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0VXU7_H0VXU7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and sp_P35716_SOX11_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1D5R7Q8_A0A1D5R7Q8_MACMU_9544 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G3UA55_G3UA55_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_G3WF82_G3WF82_SARHA_9305 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_H0ZRX8_H0ZRX8_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2R8MWJ4_A0A2R8MWJ4_CALJA_9483 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_F1S9L1_F1S9L1_PIG_9823 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_L5KRB6_L5KRB6_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_U3KJG5_U3KJG5_FICAL_59894 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_U3I4N7_U3I4N7_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A0D9S9T7_A0A0D9S9T7_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A151N801_A0A151N801_ALLMI_8496 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091FVP8_A0A091FVP8_CORBR_85066 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091IX80_A0A091IX80_EGRGA_188379 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093QY60_A0A093QY60_9PASS_328815 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091VWA1_A0A091VWA1_NIPNI_128390 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A087QUY8_A0A087QUY8_APTFO_9233 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093HF61_A0A093HF61_STRCA_441894 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A099ZVI4_A0A099ZVI4_TINGU_94827 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2I0MTM2_A0A2I0MTM2_COLLI_8932 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A093IGV7_A0A093IGV7_DRYPU_118200 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A091I6J2_A0A091I6J2_CALAN_9244 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1S3AA59_A0A1S3AA59_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1S3GWC8_A0A1S3GWC8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1U7RT26_A0A1U7RT26_ALLSI_38654 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1U8CDB4_A0A1U8CDB4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A1V4JN48_A0A1V4JN48_PATFA_372326 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A218VDJ9_A0A218VDJ9_9PASE_299123 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A226NDZ2_A0A226NDZ2_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A226P3V3_A0A226P3V3_COLVI_9014 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2K5L0J2_A0A2K5L0J2_CERAT_9531 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2K6AS12_A0A2K6AS12_MACNE_9545 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U4BY54_A0A2U4BY54_TURTR_9739 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U3W0Y6_A0A2U3W0Y6_ODORO_9708 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2U3YXA3_A0A2U3YXA3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9DEI8_A0A2Y9DEI8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9K7L9_A0A2Y9K7L9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9MJ34_A0A2Y9MJ34_DELLE_9749 are exactly identical! WARNING: Sequences sp_P48435_SOX11_CHICK_9031 and tr_A0A2Y9SF24_A0A2Y9SF24_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and sp_P35710_SOX5_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_M3YKJ0_M3YKJ0_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A3B3HQR8_A0A3B3HQR8_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1QYX6_G1QYX6_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1PLX4_G1PLX4_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G3H3D6_G3H3D6_CRIGR_10029 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G3RJI1_G3RJI1_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H2NGT8_H2NGT8_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1NLL5_G1NLL5_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1KTS5_G1KTS5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1T1D5_G1T1D5_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F1PF35_F1PF35_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H2Q5L7_H2Q5L7_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F7EAG9_F7EAG9_ORNAN_9258 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F7FUS2_F7FUS2_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F7A293_F7A293_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_W5QFU1_W5QFU1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F1M8W4_F1M8W4_RAT_10116 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A3B5RED9_A0A3B5RED9_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_I3JU69_I3JU69_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A287D174_A0A287D174_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H0WKX6_H0WKX6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H2RYM7_H2RYM7_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H0VTX8_H0VTX8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and sp_P35711_SOX5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1D5Q680_A0A1D5Q680_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G5BEH3_G5BEH3_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_K7F4C0_K7F4C0_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H3CN94_H3CN94_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G3Q5R9_G3Q5R9_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G3TDJ8_G3TDJ8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G3VEN5_G3VEN5_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_H0ZND0_H0ZND0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1B8Y117_A0A1B8Y117_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and sp_B3DM43_SOX5_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2R8MLZ2_A0A2R8MLZ2_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_F1SFJ1_F1SFJ1_PIG_9823 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_M3XHT0_M3XHT0_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G1LMD6_G1LMD6_AILME_9646 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_G7PK14_G7PK14_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A4FUB3_A4FUB3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_L5KKC2_L5KKC2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A337SI40_A0A337SI40_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_U3JJ01_U3JJ01_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_U3I638_U3I638_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_W5KJN5_W5KJN5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_W5NE28_W5NE28_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A096LS87_A0A096LS87_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A096NBX8_A0A096NBX8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091DWP3_A0A091DWP3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A0D9R691_A0A0D9R691_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A151NIS4_A0A151NIS4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A0Q3URI6_A0A0Q3URI6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091FGF5_A0A091FGF5_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091IRS5_A0A091IRS5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091W5H4_A0A091W5H4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A087R1J8_A0A087R1J8_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A093H8U4_A0A093H8U4_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A099ZUJ4_A0A099ZUJ4_TINGU_94827 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091FI63_A0A091FI63_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2I0LR10_A0A2I0LR10_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A093GQP1_A0A093GQP1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A091HSG0_A0A091HSG0_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1S2ZE21_A0A1S2ZE21_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1U7T724_A0A1U7T724_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A3Q0HEX0_A0A3Q0HEX0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1U7Q8M4_A0A1U7Q8M4_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A1V4JF06_A0A1V4JF06_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2I4D2K0_A0A2I4D2K0_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A218V140_A0A218V140_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2K5MAL3_A0A2K5MAL3_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2K6CHF3_A0A2K6CHF3_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2K5YPH0_A0A2K5YPH0_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2R9B349_A0A2R9B349_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2U4BFK0_A0A2U4BFK0_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2U3ZSY1_A0A2U3ZSY1_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2U3X8J6_A0A2U3X8J6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2U9B1W5_A0A2U9B1W5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2Y9RH94_A0A2Y9RH94_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2Y9KWI7_A0A2Y9KWI7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2Y9NVD5_A0A2Y9NVD5_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A2Y9T5T9_A0A2Y9T5T9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A384C9A2_A0A384C9A2_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q6A2A9_Q6A2A9_CHICK_9031 and tr_A0A384B6K4_A0A384B6K4_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_Q04892_SOX14_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_M3Z4N2_M3Z4N2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G1SBJ0_G1SBJ0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3HEY5_G3HEY5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3RDD2_G3RDD2_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H2PBI9_H2PBI9_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G1TJ86_G1TJ86_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I3TV57_A0A2I3TV57_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_F6XNT3_F6XNT3_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_W5Q1Z3_W5Q1Z3_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_B7SZV3_B7SZV3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A287D385_A0A287D385_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0WE30_H0WE30_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_O95416_SOX14_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_F7HQE3_F7HQE3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G5BC40_G5BC40_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3SSE7_G3SSE7_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3WHS5_G3WHS5_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0Z8W5_H0Z8W5_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_A4QNG3_SOX14_XENTR_8364 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8P701_A0A2R8P701_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H3AVL8_H3AVL8_LATCH_7897 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G7P040_G7P040_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_L5KZV5_L5KZV5_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I2U9L9_A0A2I2U9L9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3KIG3_U3KIG3_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3HYI1_U3HYI1_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A096MSU2_A0A096MSU2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091EBT3_A0A091EBT3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0D9SC48_A0A0D9SC48_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A151NGX8_A0A151NGX8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0Q3PLH6_A0A0Q3PLH6_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093Q8L4_A0A093Q8L4_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093J9H0_A0A093J9H0_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091XRL3_A0A091XRL3_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0A0AMQ0_A0A0A0AMQ0_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093GCB4_A0A093GCB4_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091HR26_A0A091HR26_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S2ZMY7_A0A1S2ZMY7_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S3GQ94_A0A1S3GQ94_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1L8G4Z6_A0A1L8G4Z6_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1L8GB57_A0A1L8GB57_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7T8B1_A0A1U7T8B1_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7RC23_A0A1U7RC23_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7QSF6_A0A1U7QSF6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1V4KQX0_A0A1V4KQX0_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A218UEN1_A0A218UEN1_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226NCN2_A0A226NCN2_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226PUW5_A0A226PUW5_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5KS53_A0A2K5KS53_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K6ANL6_A0A2K6ANL6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5XVC7_A0A2K5XVC7_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8ZCF2_A0A2R8ZCF2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U4B8W6_A0A2U4B8W6_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3WV20_A0A2U3WV20_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3X925_A0A2U3X925_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9DUM9_A0A2Y9DUM9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9KGL2_A0A2Y9KGL2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9NT43_A0A2Y9NT43_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9FBD0_A0A2Y9FBD0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A384DHB9_A0A384DHB9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A383Z5H6_A0A383Z5H6_BALAS_310752 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_G1Q1Y7_G1Q1Y7_MYOLU_59463 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_G3QS49_G3QS49_GORGO_9595 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_K7ESR9_K7ESR9_PONAB_9601 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2I3S8Z2_A0A2I3S8Z2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_D3ZTE1_D3ZTE1_RAT_10116 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_I3N3X7_I3N3X7_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_H0Y1L2_H0Y1L2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and sp_Q9BT81_SOX7_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_F6Z4T7_F6Z4T7_CALJA_9483 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A287A8T2_A0A287A8T2_PIG_9823 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2I2UE66_A0A2I2UE66_FELCA_9685 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A096MZ97_A0A096MZ97_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A1S2ZCJ5_A0A1S2ZCJ5_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A1U7QBA4_A0A1U7QBA4_MESAU_10036 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2K5M610_A0A2K5M610_CERAT_9531 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2K6CKJ3_A0A2K6CKJ3_MACNE_9545 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2U3VK82_A0A2U3VK82_ODORO_9708 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2U3XQK6_A0A2U3XQK6_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2Y9PYS2_A0A2Y9PYS2_DELLE_9749 are exactly identical! WARNING: Sequences sp_P40646_SOX7_MOUSE_10090 and tr_A0A2Y9T6H2_A0A2Y9T6H2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P43680_SOX18_MOUSE_10090 and tr_G3IBT0_G3IBT0_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P43680_SOX18_MOUSE_10090 and tr_Q4V7E4_Q4V7E4_RAT_10116 are exactly identical! WARNING: Sequences sp_P43680_SOX18_MOUSE_10090 and tr_A0A1U7QWJ8_A0A1U7QWJ8_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_H2P1I0_H2P1I0_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_E2RH58_E2RH58_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_K7CW19_K7CW19_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_F6VU03_F6VU03_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_D3ZZ13_D3ZZ13_RAT_10116 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_H0XKX2_H0XKX2_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A286X7U6_A0A286X7U6_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and sp_O15370_SOX12_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A1D5QB43_A0A1D5QB43_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_G3VPA1_G3VPA1_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2R8ML84_A0A2R8ML84_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_I3LK63_I3LK63_PIG_9823 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A337RVV8_A0A337RVV8_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A096N4N0_A0A096N4N0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A0D9SBP5_A0A0D9SBP5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A1S2ZQT1_A0A1S2ZQT1_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A3Q0C9F2_A0A3Q0C9F2_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2K5L3D6_A0A2K5L3D6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2K6ATW4_A0A2K6ATW4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3VAD4_A0A2U3VAD4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3VEI1_A0A2U3VEI1_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2U3X7Y7_A0A2U3X7Y7_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9D9W8_A0A2Y9D9W8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9IPI9_A0A2Y9IPI9_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9PZ92_A0A2Y9PZ92_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q04890_SOX12_MOUSE_10090 and tr_A0A2Y9T670_A0A2Y9T670_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_M3YJP8_M3YJP8_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G1RVI9_G1RVI9_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G1PVB2_G1PVB2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G3HQB6_G3HQB6_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G3RAI1_G3RAI1_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2J8R6N0_A0A2J8R6N0_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_E2RJG9_E2RJG9_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_K7BLF6_K7BLF6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_F6SSC4_F6SSC4_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_D4A8S0_D4A8S0_RAT_10116 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_I3MP62_I3MP62_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_H0X5Q9_H0X5Q9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and sp_Q9UN79_SOX13_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_F6UUG1_F6UUG1_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_F6W7D7_F6W7D7_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_F1S3U8_F1S3U8_PIG_9823 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G1L232_G1L232_AILME_9646 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_G7NVE7_G7NVE7_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_L5JV52_L5JV52_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A096MUS4_A0A096MUS4_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A0D9RPJ1_A0A0D9RPJ1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A1S2ZR11_A0A1S2ZR11_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A1S3F8U8_A0A1S3F8U8_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A1U7UCR3_A0A1U7UCR3_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A3Q0CVT7_A0A3Q0CVT7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2K5P3H3_A0A2K5P3H3_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2K6B5V1_A0A2K6B5V1_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2K5XIF8_A0A2K5XIF8_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2R9A6Q0_A0A2R9A6Q0_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2U3ZKH8_A0A2U3ZKH8_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2U3XJF9_A0A2U3XJF9_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2Y9JU25_A0A2Y9JU25_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2Y9Q1M0_A0A2Y9Q1M0_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A2Y9TFF2_A0A2Y9TFF2_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q04891_SOX13_MOUSE_10090 and tr_A0A383YTU6_A0A383YTU6_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q06831_SOX4_MOUSE_10090 and tr_A0A1U7QHY6_A0A1U7QHY6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_M3YGH2_M3YGH2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G1PFB1_G1PFB1_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G3S507_G3S507_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_H2PQB5_H2PQB5_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G3V923_G3V923_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_I3ND44_I3ND44_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_H0XM42_H0XM42_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_H0UUZ2_H0UUZ2_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G3UCN5_G3UCN5_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2R8N6U9_A0A2R8N6U9_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_F1RSI1_F1RSI1_PIG_9823 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G1LYX1_G1LYX1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_G7PBU8_G7PBU8_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_L5JUZ8_L5JUZ8_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A337RUQ0_A0A337RUQ0_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A096MV92_A0A096MV92_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A0D9RQ99_A0A0D9RQ99_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1S2Z9R2_A0A1S2Z9R2_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1S3EMN3_A0A1S3EMN3_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A1U7RF78_A0A1U7RF78_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2K5LZ51_A0A2K5LZ51_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2K6CCT3_A0A2K6CCT3_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2U4AJ34_A0A2U4AJ34_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2U3WM72_A0A2U3WM72_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2U3YER1_A0A2U3YER1_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2Y9DEJ4_A0A2Y9DEJ4_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2Y9KDX5_A0A2Y9KDX5_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2Y9M570_A0A2Y9M570_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q61473_SOX17_MOUSE_10090 and tr_A0A2Y9SXF2_A0A2Y9SXF2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5JR89_W5JR89_ANODA_43151 and tr_B0WHG0_B0WHG0_CULQU_7176 are exactly identical! WARNING: Sequences tr_W5JR89_W5JR89_ANODA_43151 and tr_A7USJ7_A7USJ7_ANOGA_7165 are exactly identical! WARNING: Sequences tr_W5JR89_W5JR89_ANODA_43151 and tr_Q179R4_Q179R4_AEDAE_7159 are exactly identical! WARNING: Sequences tr_W5JR89_W5JR89_ANODA_43151 and tr_A0A084WPR7_A0A084WPR7_ANOSI_74873 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_M4AZB1_M4AZB1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_I3KY88_I3KY88_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_Q6WNT5_Q6WNT5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_Q4SIN0_Q4SIN0_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A087XH71_A0A087XH71_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A1S3LZ60_A0A1S3LZ60_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A1S3Q2N9_A0A1S3Q2N9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A2I4AIG3_A0A2I4AIG3_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A060Z6M0_A0A060Z6M0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_W5U5F0_W5U5F0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B3HT05_A0A3B3HT05_ORYLA_8090 and tr_A0A2U9BLI9_A0A2U9BLI9_SCOMX_52904 are exactly identical! WARNING: Sequences tr_C3VV10_C3VV10_ORYLA_8090 and tr_A0A3B5QW47_A0A3B5QW47_XIPMA_8083 are exactly identical! WARNING: Sequences tr_C3VV10_C3VV10_ORYLA_8090 and tr_A0A087XLU6_A0A087XLU6_POEFO_48698 are exactly identical! WARNING: Sequences tr_C3VV10_C3VV10_ORYLA_8090 and tr_A0A2I4D7H0_A0A2I4D7H0_9TELE_52670 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_Q6WNS5_Q6WNS5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_H3DIC0_H3DIC0_TETNG_99883 are exactly identical! WARNING: Sequences tr_C3VV17_C3VV17_ORYLA_8090 and tr_A0A2U9CMZ3_A0A2U9CMZ3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_M4A5D2_M4A5D2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_I3KY57_I3KY57_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_G3NTT5_G3NTT5_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_A0A087YEH4_A0A087YEH4_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_A0A2I4DAM4_A0A2I4DAM4_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LJV9_H2LJV9_ORYLA_8090 and tr_A0A2U9AZB0_A0A2U9AZB0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2M9C3_H2M9C3_ORYLA_8090 and tr_H2RJK6_H2RJK6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2M9C3_H2M9C3_ORYLA_8090 and tr_H3C721_H3C721_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2M9C3_H2M9C3_ORYLA_8090 and tr_G3PA36_G3PA36_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2M9C3_H2M9C3_ORYLA_8090 and tr_A0A2U9BHZ4_A0A2U9BHZ4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1TFA6_G1TFA6_RABIT_9986 and tr_W5NVJ1_W5NVJ1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_G1TFA6_G1TFA6_RABIT_9986 and tr_H0V860_H0V860_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1TFA6_G1TFA6_RABIT_9986 and tr_G5BML7_G5BML7_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1TFA6_G1TFA6_RABIT_9986 and tr_E1BL97_E1BL97_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1TFA6_G1TFA6_RABIT_9986 and tr_M3VZC8_M3VZC8_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q23045_EGL13_CAEEL_6239 and tr_A0A2H2I2R8_A0A2H2I2R8_CAEJA_281687 are exactly identical! WARNING: Sequences sp_Q23045_EGL13_CAEEL_6239 and tr_E3LDW7_E3LDW7_CAERE_31234 are exactly identical! WARNING: Sequences sp_Q23045_EGL13_CAEEL_6239 and tr_A0A261CSR9_A0A261CSR9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A0A2I3S8G6_A0A2I3S8G6_PANTR_9598 and tr_A0A2R9A5Y2_A0A2R9A5Y2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7GHA9_F7GHA9_MONDO_13616 and tr_G3VYF8_G3VYF8_SARHA_9305 are exactly identical! WARNING: Sequences tr_K7DZF9_K7DZF9_MONDO_13616 and tr_G3WW49_G3WW49_SARHA_9305 are exactly identical! WARNING: Sequences tr_B0X4K1_B0X4K1_CULQU_7176 and tr_Q16NX7_Q16NX7_AEDAE_7159 are exactly identical! WARNING: Sequences tr_A0A3B5RD25_A0A3B5RD25_XIPMA_8083 and tr_I3KEK8_I3KEK8_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5RD25_A0A3B5RD25_XIPMA_8083 and tr_H2UKG8_H2UKG8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B5RD25_A0A3B5RD25_XIPMA_8083 and tr_A0A087XQI0_A0A087XQI0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5RD25_A0A3B5RD25_XIPMA_8083 and tr_A0A2I4CPY9_A0A2I4CPY9_9TELE_52670 are exactly identical! WARNING: Sequences tr_M3ZIP0_M3ZIP0_XIPMA_8083 and tr_A0A087Y784_A0A087Y784_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZPT6_M3ZPT6_XIPMA_8083 and tr_I3KDV1_I3KDV1_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_G3Q9G0_G3Q9G0_GASAC_69293 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_A0A087Y2X6_A0A087Y2X6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AZQ6_M4AZQ6_XIPMA_8083 and tr_A0A087YSJ7_A0A087YSJ7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A0L7QXI8_A0A0L7QXI8_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A154P3K4_A0A154P3K4_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A088A302_A0A088A302_APIME_7460 and tr_A0A2A3E8V3_A0A2A3E8V3_APICC_94128 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_A0A212F381_A0A212F381_DANPL_278856 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_E0VCS5_E0VCS5_PEDHC_121224 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_T1JE13_T1JE13_STRMM_126957 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_A0A0N1IHU9_A0A0N1IHU9_PAPMA_76193 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_A0A194PXU6_A0A194PXU6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_H9JIT8_H9JIT8_BOMMO_7091 and tr_A0A3Q0IW22_A0A3Q0IW22_DIACI_121845 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_F4WJY9_F4WJY9_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A026VSX9_A0A026VSX9_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A151XI37_A0A151XI37_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A195E5Z0_A0A195E5Z0_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A195BGQ3_A0A195BGQ3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A195F919_A0A195F919_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158N9D3_A0A158N9D3_ATTCE_12957 and tr_A0A195CGR6_A0A195CGR6_9HYME_456900 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q6WNT8_Q6WNT8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q4SV91_Q4SV91_TETNG_99883 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_A0A0P7XKK6_A0A0P7XKK6_9TELE_113540 are exactly identical! WARNING: Sequences tr_I3JFV2_I3JFV2_ORENI_8128 and tr_H3CVG8_H3CVG8_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KWJ7_I3KWJ7_ORENI_8128 and tr_W5LW40_W5LW40_LEPOC_7918 are exactly identical! WARNING: Sequences tr_I3N0H2_I3N0H2_ICTTR_43179 and tr_F7FV06_F7FV06_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A3B5KF53_A0A3B5KF53_TAKRU_31033 and tr_Q4S0P5_Q4S0P5_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5KLL2_A0A3B5KLL2_TAKRU_31033 and tr_Q4RR75_Q4RR75_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6WNT3_Q6WNT3_TAKRU_31033 and tr_H3CW60_H3CW60_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A286XHN1_A0A286XHN1_CAVPO_10141 and tr_A0A091E106_A0A091E106_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A2K6VZ00_A0A2K6VZ00_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0B2VC65_A0A0B2VC65_TOXCA_6265 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0N4TLB5_A0A0N4TLB5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0R3QXA9_A0A0R3QXA9_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A0R3RVA9_A0A0R3RVA9_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A182E4X2_A0A182E4X2_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0K0J4R5_A0A0K0J4R5_BRUMA_6279 and tr_A0A1I7W449_A0A1I7W449_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A1P6C634_A0A1P6C634_BRUMA_6279 and tr_A0A0N4T0S4_A0A0N4T0S4_BRUPA_6280 are exactly identical! WARNING: Sequences tr_E5SB71_E5SB71_TRISP_6334 and tr_A0A0V0SJ73_A0A0V0SJ73_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SB71_E5SB71_TRISP_6334 and tr_A0A0V1D420_A0A0V1D420_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SB71_E5SB71_TRISP_6334 and tr_A0A0V1ADM1_A0A0V1ADM1_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SB71_E5SB71_TRISP_6334 and tr_A0A0V1PIA2_A0A0V1PIA2_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SB71_E5SB71_TRISP_6334 and tr_A0A0V0TG78_A0A0V0TG78_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1CTP4_A0A0V1CTP4_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0WVR9_A0A0V0WVR9_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1LB14_A0A0V1LB14_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0XYN1_A0A0V0XYN1_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1PCW0_A0A0V1PCW0_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0UCJ5_A0A0V0UCJ5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A212EMK3_A0A212EMK3_DANPL_278856 and tr_A0A2A4K865_A0A2A4K865_HELVI_7102 are exactly identical! WARNING: Sequences tr_K7EZR6_K7EZR6_PELSI_13735 and tr_A0A151LZ99_A0A151LZ99_ALLMI_8496 are exactly identical! WARNING: Sequences tr_K7EZR6_K7EZR6_PELSI_13735 and tr_A0A3Q0H7C7_A0A3Q0H7C7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_K7FRH6_K7FRH6_PELSI_13735 and tr_H0ZA76_H0ZA76_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7FRH6_K7FRH6_PELSI_13735 and tr_U3K6X6_U3K6X6_FICAL_59894 are exactly identical! WARNING: Sequences tr_K7FRH6_K7FRH6_PELSI_13735 and tr_A0A218US57_A0A218US57_9PASE_299123 are exactly identical! WARNING: Sequences tr_K7FRH6_K7FRH6_PELSI_13735 and tr_A0A226NK20_A0A226NK20_CALSU_9009 are exactly identical! WARNING: Sequences tr_K7FRH6_K7FRH6_PELSI_13735 and tr_A0A226PEZ1_A0A226PEZ1_COLVI_9014 are exactly identical! WARNING: Sequences tr_G3NTZ4_G3NTZ4_GASAC_69293 and tr_A0A2U9BVA0_A0A2U9BVA0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G3U9J0_G3U9J0_LOXAF_9785 and tr_A0A2Y9R3A2_A0A2Y9R3A2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3UE19_G3UE19_LOXAF_9785 and tr_G3W8V7_G3W8V7_SARHA_9305 are exactly identical! WARNING: Sequences tr_G3UE19_G3UE19_LOXAF_9785 and tr_A0A2Y9DVW2_A0A2Y9DVW2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YXE0_H0YXE0_TAEGU_59729 and tr_A0A091E8L7_A0A091E8L7_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0YXE0_H0YXE0_TAEGU_59729 and tr_A0A099ZEP0_A0A099ZEP0_TINGU_94827 are exactly identical! WARNING: Sequences tr_H0YXJ5_H0YXJ5_TAEGU_59729 and tr_A0A218UHC5_A0A218UHC5_9PASE_299123 are exactly identical! WARNING: Sequences tr_B4MKJ3_B4MKJ3_DROWI_7260 and tr_B4LFZ9_B4LFZ9_DROVI_7244 are exactly identical! WARNING: Sequences tr_A0A1B8Y7M5_A0A1B8Y7M5_XENTR_8364 and sp_B1H349_SOX6_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1B8Y7M5_A0A1B8Y7M5_XENTR_8364 and tr_W5M5G6_W5M5G6_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A1B8Y7M5_A0A1B8Y7M5_XENTR_8364 and tr_A0A0P7VCN7_A0A0P7VCN7_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A1B8Y7M5_A0A1B8Y7M5_XENTR_8364 and tr_A0A2D0RTQ0_A0A2D0RTQ0_ICTPU_7998 are exactly identical! WARNING: Sequences sp_Q28GD5_SOX7_XENTR_8364 and tr_A0A1L8GC14_A0A1L8GC14_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q66JF1_SOX11_XENTR_8364 and tr_A0A1L8G567_A0A1L8G567_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q66JF1_SOX11_XENTR_8364 and tr_A0A1L8GBJ0_A0A1L8GBJ0_XENLA_8355 are exactly identical! WARNING: Sequences sp_Q6F2F0_S17B3_XENTR_8364 and sp_Q8AWH2_S17B1_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A287APF5_A0A287APF5_PIG_9823 and tr_A0A2U3WMD6_A0A2U3WMD6_ODORO_9708 are exactly identical! WARNING: Sequences sp_P36393_SRY_PIG_9823 and tr_Q5I921_Q5I921_PIG_9823 are exactly identical! WARNING: Sequences tr_E3N1Q6_E3N1Q6_CAERE_31234 and tr_E3NRP9_E3NRP9_CAERE_31234 are exactly identical! WARNING: Sequences tr_E3N1Q6_E3N1Q6_CAERE_31234 and tr_A0A261C0E1_A0A261C0E1_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8XKI9_A8XKI9_CAEBR_6238 and tr_A0A1I7TJQ6_A0A1I7TJQ6_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A8XKI9_A8XKI9_CAEBR_6238 and tr_A0A2G5SUG5_A0A2G5SUG5_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3RIY2_B3RIY2_TRIAD_10228 and tr_A0A369RX36_A0A369RX36_9METZ_287889 are exactly identical! WARNING: Sequences tr_F6RRS7_F6RRS7_BOVIN_9913 and tr_A0A2U4CMX9_A0A2U4CMX9_TURTR_9739 are exactly identical! WARNING: Sequences tr_F6RRS7_F6RRS7_BOVIN_9913 and tr_A0A2Y9QD54_A0A2Y9QD54_DELLE_9749 are exactly identical! WARNING: Sequences tr_U3KIC5_U3KIC5_FICAL_59894 and tr_A0A218USA2_A0A218USA2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A3B1JFM8_A0A3B1JFM8_ASTMX_7994 and tr_A0A1S3SBI0_A0A1S3SBI0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B1JFM8_A0A3B1JFM8_ASTMX_7994 and tr_A0A060YSN3_A0A060YSN3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_W5LSX1_W5LSX1_ASTMX_7994 and tr_A0A2D0S5H9_A0A2D0S5H9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5NMP4_W5NMP4_LEPOC_7918 and tr_A0A1S3MW73_A0A1S3MW73_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A044TLS8_A0A044TLS8_ONCVO_6282 and tr_A0A0R3S537_A0A0R3S537_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A044TLS8_A0A044TLS8_ONCVO_6282 and tr_A0A183HZ88_A0A183HZ88_9BILA_387005 are exactly identical! WARNING: Sequences tr_A0A044TLS8_A0A044TLS8_ONCVO_6282 and tr_A0A182E3F6_A0A182E3F6_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044TLS8_A0A044TLS8_ONCVO_6282 and tr_A0A1I7VI21_A0A1I7VI21_LOALO_7209 are exactly identical! WARNING: Sequences tr_U4UPB1_U4UPB1_DENPD_77166 and tr_A0A0L7R5R6_A0A0L7R5R6_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A0K0EX08_A0A0K0EX08_STRVS_75913 and tr_A0A0K0EGI3_A0A0K0EGI3_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0EX08_A0A0K0EX08_STRVS_75913 and tr_A0A090N0Q1_A0A090N0Q1_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0EX08_A0A0K0EX08_STRVS_75913 and tr_A0A0N4Z4Z5_A0A0N4Z4Z5_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0EX08_A0A0K0EX08_STRVS_75913 and tr_A0A0N5C1H1_A0A0N5C1H1_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0L7LCX3_A0A0L7LCX3_9NEOP_104452 and tr_A0A194QNL5_A0A194QNL5_PAPMA_76193 are exactly identical! WARNING: Sequences tr_A0A0L7LCX3_A0A0L7LCX3_9NEOP_104452 and tr_A0A194QGW7_A0A194QGW7_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0L7LCX3_A0A0L7LCX3_9NEOP_104452 and tr_A0A2J7R689_A0A2J7R689_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A0R3X6T0_A0A0R3X6T0_HYDTA_6205 and tr_A0A0R3W3K4_A0A0R3W3K4_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A151MZZ1_A0A151MZZ1_ALLMI_8496 and tr_A0A1U7RKL1_A0A1U7RKL1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NRH8_A0A151NRH8_ALLMI_8496 and tr_A0A226MUU1_A0A226MUU1_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A194QQ68_A0A194QQ68_PAPMA_76193 and tr_A0A194QGS9_A0A194QGS9_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0V0WHT5_A0A0V0WHT5_9BILA_92179 and tr_A0A0V1LGU0_A0A0V1LGU0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WHT5_A0A0V0WHT5_9BILA_92179 and tr_A0A0V1EMT3_A0A0V1EMT3_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0WHT5_A0A0V0WHT5_9BILA_92179 and tr_A0A0V1N9F0_A0A0V1N9F0_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0WHT5_A0A0V0WHT5_9BILA_92179 and tr_A0A0V1H4Q7_A0A0V1H4Q7_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S2ZZ84_A0A1S2ZZ84_ERIEU_9365 and tr_A0A1S3FPD6_A0A1S3FPD6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1S3KKV5_A0A1S3KKV5_SALSA_8030 and tr_A0A1S3RHM6_A0A1S3RHM6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KKV5_A0A1S3KKV5_SALSA_8030 and tr_A0A060VUT3_A0A060VUT3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LC41_A0A1S3LC41_SALSA_8030 and tr_A0A1S3P4A3_A0A1S3P4A3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LC41_A0A1S3LC41_SALSA_8030 and tr_A0A060YF07_A0A060YF07_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LFN5_A0A1S3LFN5_SALSA_8030 and tr_A0A1S3MIQ9_A0A1S3MIQ9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LFN5_A0A1S3LFN5_SALSA_8030 and tr_A0A060Z3H5_A0A060Z3H5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M793_A0A1S3M793_SALSA_8030 and tr_A0A060YHL4_A0A060YHL4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M793_A0A1S3M793_SALSA_8030 and tr_W5UF52_W5UF52_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A1S3QA46_A0A1S3QA46_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A060VPX6_A0A060VPX6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NCY8_A0A1S3NCY8_SALSA_8030 and tr_A0A060W3M5_A0A060W3M5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PUP7_A0A1S3PUP7_SALSA_8030 and tr_A0A1S3PUV9_A0A1S3PUV9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3SEA8_A0A1S3SEA8_SALSA_8030 and tr_A0A060WAF2_A0A060WAF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0H9Z8_C0H9Z8_SALSA_8030 and tr_A0A060ZAN1_A0A060ZAN1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MLW0_A0A226MLW0_CALSU_9009 and tr_A0A226NYM5_A0A226NYM5_COLVI_9014 are exactly identical! WARNING: Duplicate sequences found: 675 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.reduced.phy Alignment comprises 1 partitions and 77 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 77 / 77 Gaps: 1.30 % Invariant sites: 1.30 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 991 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 77 / 6160 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -79854.302793] Initial branch length optimization [00:00:02 -62370.849512] Model parameter optimization (eps = 10.000000) [00:00:28 -61966.698337] AUTODETECT spr round 1 (radius: 5) [00:01:44 -31031.033837] AUTODETECT spr round 2 (radius: 10) [00:02:59 -20107.369695] AUTODETECT spr round 3 (radius: 15) [00:04:21 -14542.196930] AUTODETECT spr round 4 (radius: 20) [00:05:46 -11974.101740] AUTODETECT spr round 5 (radius: 25) [00:07:18 -11068.382905] SPR radius for FAST iterations: 25 (autodetect) [00:07:18 -11068.382905] Model parameter optimization (eps = 3.000000) [00:07:32 -11034.193486] FAST spr round 1 (radius: 25) [00:08:50 -8749.594662] FAST spr round 2 (radius: 25) [00:10:01 -8131.426078] FAST spr round 3 (radius: 25) [00:11:11 -7817.912719] FAST spr round 4 (radius: 25) [00:12:21 -7655.242818] FAST spr round 5 (radius: 25) [00:13:29 -7580.854050] FAST spr round 6 (radius: 25) [00:14:37 -7479.230693] FAST spr round 7 (radius: 25) [00:15:44 -7426.124851] FAST spr round 8 (radius: 25) [00:16:50 -7426.124840] Model parameter optimization (eps = 1.000000) [00:16:56 -7425.527523] SLOW spr round 1 (radius: 5) [00:18:05 -7424.852880] SLOW spr round 2 (radius: 5) [00:19:11 -7424.852236] SLOW spr round 3 (radius: 10) [00:20:23 -7350.729757] SLOW spr round 4 (radius: 5) [00:21:37 -7282.658363] SLOW spr round 5 (radius: 5) [00:22:45 -7280.555894] SLOW spr round 6 (radius: 5) [00:23:50 -7280.554906] SLOW spr round 7 (radius: 10) [00:25:01 -7280.554865] SLOW spr round 8 (radius: 15) [00:26:27 -7219.202336] SLOW spr round 9 (radius: 5) [00:27:47 -7183.825067] SLOW spr round 10 (radius: 5) [00:28:56 -7183.812291] SLOW spr round 11 (radius: 10) [00:30:07 -7183.812263] SLOW spr round 12 (radius: 15) [00:31:30 -7183.741616] SLOW spr round 13 (radius: 20) [00:33:03 -7118.763785] SLOW spr round 14 (radius: 5) [00:34:21 -7117.772355] SLOW spr round 15 (radius: 5) [00:35:34 -7117.770735] SLOW spr round 16 (radius: 10) [00:36:45 -7117.770465] SLOW spr round 17 (radius: 15) [00:38:07 -7116.341010] SLOW spr round 18 (radius: 5) [00:39:25 -7114.676527] SLOW spr round 19 (radius: 5) [00:40:38 -7108.094110] SLOW spr round 20 (radius: 5) [00:41:48 -7107.546642] SLOW spr round 21 (radius: 5) [00:42:56 -7107.546609] SLOW spr round 22 (radius: 10) [00:44:09 -7107.546608] SLOW spr round 23 (radius: 15) [00:45:33 -7107.546608] SLOW spr round 24 (radius: 20) [00:46:57] [worker #1] ML tree search #2, logLikelihood: -8389.216914 [00:47:09 -7107.546608] SLOW spr round 25 (radius: 25) [00:49:02 -7107.546608] Model parameter optimization (eps = 0.100000) [00:49:06] [worker #0] ML tree search #1, logLikelihood: -7107.520092 [00:49:06 -80045.706074] Initial branch length optimization [00:49:08 -62384.543601] Model parameter optimization (eps = 10.000000) [00:49:29 -62026.417970] AUTODETECT spr round 1 (radius: 5) [00:50:50 -28918.279933] AUTODETECT spr round 2 (radius: 10) [00:52:10 -18404.320985] AUTODETECT spr round 3 (radius: 15) [00:53:35 -14082.414559] AUTODETECT spr round 4 (radius: 20) [00:55:05 -12280.847331] AUTODETECT spr round 5 (radius: 25) [00:56:49 -10158.827463] SPR radius for FAST iterations: 25 (autodetect) [00:56:49 -10158.827463] Model parameter optimization (eps = 3.000000) [00:57:07 -10125.755641] FAST spr round 1 (radius: 25) [00:58:21 -7997.733713] FAST spr round 2 (radius: 25) [00:59:31 -7507.633387] FAST spr round 3 (radius: 25) [01:00:42 -7398.650922] FAST spr round 4 (radius: 25) [01:01:55 -7370.248780] FAST spr round 5 (radius: 25) [01:03:06 -7366.019263] FAST spr round 6 (radius: 25) [01:04:16 -7366.019207] Model parameter optimization (eps = 1.000000) [01:04:28 -7361.891283] SLOW spr round 1 (radius: 5) [01:05:39 -7361.132796] SLOW spr round 2 (radius: 5) [01:06:49 -7360.394188] SLOW spr round 3 (radius: 5) [01:07:57 -7360.394174] SLOW spr round 4 (radius: 10) [01:09:13 -7338.912345] SLOW spr round 5 (radius: 5) [01:10:28 -7338.638966] SLOW spr round 6 (radius: 5) [01:11:35 -7338.638959] SLOW spr round 7 (radius: 10) [01:12:45 -7338.638959] SLOW spr round 8 (radius: 15) [01:14:12 -7251.696613] SLOW spr round 9 (radius: 5) [01:15:31 -7233.655729] SLOW spr round 10 (radius: 5) [01:16:41 -7230.138109] SLOW spr round 11 (radius: 5) [01:17:48 -7230.137148] SLOW spr round 12 (radius: 10) [01:18:59 -7227.274069] SLOW spr round 13 (radius: 5) [01:20:11 -7227.228823] SLOW spr round 14 (radius: 10) [01:21:22 -7227.228401] SLOW spr round 15 (radius: 15) [01:22:46 -7226.981323] SLOW spr round 16 (radius: 5) [01:24:02 -7226.981322] SLOW spr round 17 (radius: 10) [01:25:15 -7221.779332] SLOW spr round 18 (radius: 5) [01:26:27 -7221.778748] SLOW spr round 19 (radius: 10) [01:27:38 -7221.778728] SLOW spr round 20 (radius: 15) [01:29:02 -7221.778727] SLOW spr round 21 (radius: 20) [01:30:41 -7196.433601] SLOW spr round 22 (radius: 5) [01:32:01 -7181.175053] SLOW spr round 23 (radius: 5) [01:33:13 -7160.303016] SLOW spr round 24 (radius: 5) [01:34:19 -7150.588720] SLOW spr round 25 (radius: 5) [01:35:24 -7150.588521] SLOW spr round 26 (radius: 10) [01:36:36 -7101.765540] SLOW spr round 27 (radius: 5) [01:37:49 -7098.526371] SLOW spr round 28 (radius: 5) [01:38:54 -7098.526271] SLOW spr round 29 (radius: 10) [01:40:04 -7098.526260] SLOW spr round 30 (radius: 15) [01:41:28 -7097.125003] SLOW spr round 31 (radius: 5) [01:42:42 -7097.124982] SLOW spr round 32 (radius: 10) [01:43:54 -7097.124980] SLOW spr round 33 (radius: 15) [01:45:17 -7097.124980] SLOW spr round 34 (radius: 20) [01:46:50 -7096.662613] SLOW spr round 35 (radius: 5) [01:48:06 -7096.662606] SLOW spr round 36 (radius: 10) [01:49:20 -7096.662606] SLOW spr round 37 (radius: 15) [01:49:51] [worker #1] ML tree search #4, logLikelihood: -8334.307423 [01:50:43 -7096.662606] SLOW spr round 38 (radius: 20) [01:52:17 -7096.662580] SLOW spr round 39 (radius: 25) [01:54:12 -7096.662580] Model parameter optimization (eps = 0.100000) [01:54:21] [worker #0] ML tree search #3, logLikelihood: -7096.399812 [01:54:21 -80804.043310] Initial branch length optimization [01:54:23 -63452.281065] Model parameter optimization (eps = 10.000000) [01:54:42 -63117.263993] AUTODETECT spr round 1 (radius: 5) [01:55:59 -29229.664246] AUTODETECT spr round 2 (radius: 10) [01:57:14 -19516.060418] AUTODETECT spr round 3 (radius: 15) [01:58:39 -14700.995544] AUTODETECT spr round 4 (radius: 20) [02:00:07 -11983.072119] AUTODETECT spr round 5 (radius: 25) [02:01:43 -11376.679904] SPR radius for FAST iterations: 25 (autodetect) [02:01:43 -11376.679904] Model parameter optimization (eps = 3.000000) [02:02:02 -11334.996881] FAST spr round 1 (radius: 25) [02:03:19 -9413.724360] FAST spr round 2 (radius: 25) [02:04:31 -8698.031217] FAST spr round 3 (radius: 25) [02:05:44 -8471.297543] FAST spr round 4 (radius: 25) [02:06:56 -8334.336419] FAST spr round 5 (radius: 25) [02:08:07 -8230.202303] FAST spr round 6 (radius: 25) [02:09:22 -8179.684812] FAST spr round 7 (radius: 25) [02:10:34 -8127.882625] FAST spr round 8 (radius: 25) [02:11:44 -8124.235213] FAST spr round 9 (radius: 25) [02:12:55 -8124.235211] Model parameter optimization (eps = 1.000000) [02:13:07 -8120.640825] SLOW spr round 1 (radius: 5) [02:14:18 -8118.966040] SLOW spr round 2 (radius: 5) [02:15:30 -8115.095447] SLOW spr round 3 (radius: 5) [02:16:39 -8115.095411] SLOW spr round 4 (radius: 10) [02:17:55 -8061.845983] SLOW spr round 5 (radius: 5) [02:19:13 -8048.437645] SLOW spr round 6 (radius: 5) [02:20:23 -8048.437299] SLOW spr round 7 (radius: 10) [02:21:36 -8048.437288] SLOW spr round 8 (radius: 15) [02:23:05 -7976.572850] SLOW spr round 9 (radius: 5) [02:24:26 -7962.008899] SLOW spr round 10 (radius: 5) [02:25:39 -7962.008804] SLOW spr round 11 (radius: 10) [02:26:54 -7962.008761] SLOW spr round 12 (radius: 15) [02:28:21 -7960.551333] SLOW spr round 13 (radius: 5) [02:29:43 -7959.106245] SLOW spr round 14 (radius: 5) [02:30:55 -7959.105993] SLOW spr round 15 (radius: 10) [02:32:05 -7959.105901] SLOW spr round 16 (radius: 15) [02:33:31 -7959.105808] SLOW spr round 17 (radius: 20) [02:35:12 -7944.351600] SLOW spr round 18 (radius: 5) [02:36:34 -7941.423483] SLOW spr round 19 (radius: 5) [02:37:46 -7941.421863] SLOW spr round 20 (radius: 10) [02:38:59 -7941.202148] SLOW spr round 21 (radius: 5) [02:40:13 -7941.201937] SLOW spr round 22 (radius: 10) [02:41:25 -7941.201846] SLOW spr round 23 (radius: 15) [02:42:48 -7941.201765] SLOW spr round 24 (radius: 20) [02:44:24 -7941.201685] SLOW spr round 25 (radius: 25) [02:45:40] [worker #1] ML tree search #6, logLikelihood: -8141.089537 [02:46:21 -7806.152914] SLOW spr round 26 (radius: 5) [02:47:42 -7679.700367] SLOW spr round 27 (radius: 5) [02:48:57 -7626.351079] SLOW spr round 28 (radius: 5) [02:50:08 -7552.431305] SLOW spr round 29 (radius: 5) [02:51:18 -7498.614802] SLOW spr round 30 (radius: 5) [02:52:27 -7495.673327] SLOW spr round 31 (radius: 5) [02:53:35 -7495.673240] SLOW spr round 32 (radius: 10) [02:54:51 -7357.004199] SLOW spr round 33 (radius: 5) [02:56:09 -7287.928163] SLOW spr round 34 (radius: 5) [02:57:20 -7285.202947] SLOW spr round 35 (radius: 5) [02:58:27 -7285.202706] SLOW spr round 36 (radius: 10) [02:59:41 -7270.340886] SLOW spr round 37 (radius: 5) [03:00:56 -7269.649958] SLOW spr round 38 (radius: 5) [03:02:06 -7269.649867] SLOW spr round 39 (radius: 10) [03:03:20 -7269.649782] SLOW spr round 40 (radius: 15) [03:04:47 -7255.448757] SLOW spr round 41 (radius: 5) [03:06:08 -7243.760836] SLOW spr round 42 (radius: 5) [03:07:18 -7241.850688] SLOW spr round 43 (radius: 5) [03:08:24 -7241.272266] SLOW spr round 44 (radius: 5) [03:09:31 -7241.272137] SLOW spr round 45 (radius: 10) [03:10:44 -7240.987053] SLOW spr round 46 (radius: 5) [03:11:59 -7240.986968] SLOW spr round 47 (radius: 10) [03:13:13 -7240.986884] SLOW spr round 48 (radius: 15) [03:14:38 -7240.986799] SLOW spr round 49 (radius: 20) [03:16:16 -7240.986715] SLOW spr round 50 (radius: 25) [03:18:12 -7240.986631] Model parameter optimization (eps = 0.100000) [03:18:18] [worker #0] ML tree search #5, logLikelihood: -7240.681678 [03:18:18 -80503.240535] Initial branch length optimization [03:18:20 -62736.420352] Model parameter optimization (eps = 10.000000) [03:18:38 -62398.754571] AUTODETECT spr round 1 (radius: 5) [03:19:55 -29344.455647] AUTODETECT spr round 2 (radius: 10) [03:21:10 -19806.077879] AUTODETECT spr round 3 (radius: 15) [03:22:30 -14309.112559] AUTODETECT spr round 4 (radius: 20) [03:24:00 -11233.904381] AUTODETECT spr round 5 (radius: 25) [03:25:42 -9573.971998] SPR radius for FAST iterations: 25 (autodetect) [03:25:42 -9573.971998] Model parameter optimization (eps = 3.000000) [03:25:58 -9547.694521] FAST spr round 1 (radius: 25) [03:27:16 -7428.486785] FAST spr round 2 (radius: 25) [03:28:28 -7206.701766] FAST spr round 3 (radius: 25) [03:29:40 -7173.071397] FAST spr round 4 (radius: 25) [03:30:50 -7157.714923] FAST spr round 5 (radius: 25) [03:31:59 -7130.587911] FAST spr round 6 (radius: 25) [03:33:06 -7130.587903] Model parameter optimization (eps = 1.000000) [03:33:12 -7130.016312] SLOW spr round 1 (radius: 5) [03:34:21 -7125.341132] SLOW spr round 2 (radius: 5) [03:35:29 -7125.077064] SLOW spr round 3 (radius: 5) [03:35:39] [worker #1] ML tree search #8, logLikelihood: -7181.414132 [03:36:35 -7125.076821] SLOW spr round 4 (radius: 10) [03:37:49 -7110.105540] SLOW spr round 5 (radius: 5) [03:39:02 -7103.305408] SLOW spr round 6 (radius: 5) [03:40:10 -7103.283532] SLOW spr round 7 (radius: 10) [03:41:18 -7103.283530] SLOW spr round 8 (radius: 15) [03:42:40 -7101.511482] SLOW spr round 9 (radius: 5) [03:43:57 -7100.742097] SLOW spr round 10 (radius: 5) [03:45:05 -7100.741730] SLOW spr round 11 (radius: 10) [03:46:15 -7100.741719] SLOW spr round 12 (radius: 15) [03:47:38 -7100.741718] SLOW spr round 13 (radius: 20) [03:49:12 -7099.665433] SLOW spr round 14 (radius: 5) [03:50:29 -7099.665433] SLOW spr round 15 (radius: 10) [03:51:47 -7090.269522] SLOW spr round 16 (radius: 5) [03:52:59 -7090.233718] SLOW spr round 17 (radius: 10) [03:54:09 -7090.230211] SLOW spr round 18 (radius: 15) [03:55:33 -7090.034277] SLOW spr round 19 (radius: 5) [03:56:50 -7090.022694] SLOW spr round 20 (radius: 10) [03:58:04 -7090.021336] SLOW spr round 21 (radius: 15) [03:59:28 -7090.019954] SLOW spr round 22 (radius: 20) [04:01:04 -7089.910562] SLOW spr round 23 (radius: 5) [04:02:23 -7089.910480] SLOW spr round 24 (radius: 10) [04:03:38 -7089.910473] SLOW spr round 25 (radius: 15) [04:05:02 -7089.910473] SLOW spr round 26 (radius: 20) [04:06:38 -7089.910473] SLOW spr round 27 (radius: 25) [04:08:36 -7089.910473] Model parameter optimization (eps = 0.100000) [04:08:48] [worker #0] ML tree search #7, logLikelihood: -7089.367747 [04:08:48 -79886.845026] Initial branch length optimization [04:08:50 -62731.865028] Model parameter optimization (eps = 10.000000) [04:09:05 -62426.371928] AUTODETECT spr round 1 (radius: 5) [04:10:24 -27874.566055] AUTODETECT spr round 2 (radius: 10) [04:11:40 -18418.751037] AUTODETECT spr round 3 (radius: 15) [04:13:06 -13633.779649] AUTODETECT spr round 4 (radius: 20) [04:14:39 -10901.497338] AUTODETECT spr round 5 (radius: 25) [04:16:06 -10569.269649] SPR radius for FAST iterations: 25 (autodetect) [04:16:06 -10569.269649] Model parameter optimization (eps = 3.000000) [04:16:22 -10531.324932] FAST spr round 1 (radius: 25) [04:17:38 -8702.855409] FAST spr round 2 (radius: 25) [04:18:52 -8367.294968] FAST spr round 3 (radius: 25) [04:20:05 -8327.683795] FAST spr round 4 (radius: 25) [04:21:16 -8317.148062] FAST spr round 5 (radius: 25) [04:22:25 -8317.147992] Model parameter optimization (eps = 1.000000) [04:22:39 -8314.375197] SLOW spr round 1 (radius: 5) [04:23:08] [worker #1] ML tree search #10, logLikelihood: -7902.664201 [04:23:51 -8312.198563] SLOW spr round 2 (radius: 5) [04:25:02 -8311.022094] SLOW spr round 3 (radius: 5) [04:26:11 -8311.022012] SLOW spr round 4 (radius: 10) [04:27:25 -8302.812656] SLOW spr round 5 (radius: 5) [04:28:44 -8294.976201] SLOW spr round 6 (radius: 5) [04:29:56 -8292.550608] SLOW spr round 7 (radius: 5) [04:31:06 -8292.368309] SLOW spr round 8 (radius: 5) [04:32:15 -8292.366491] SLOW spr round 9 (radius: 10) [04:33:29 -8292.366426] SLOW spr round 10 (radius: 15) [04:34:58 -8260.094772] SLOW spr round 11 (radius: 5) [04:36:21 -8257.540472] SLOW spr round 12 (radius: 5) [04:37:35 -8257.538921] SLOW spr round 13 (radius: 10) [04:38:50 -8255.881001] SLOW spr round 14 (radius: 5) [04:40:05 -8255.880994] SLOW spr round 15 (radius: 10) [04:41:19 -8255.880989] SLOW spr round 16 (radius: 15) [04:42:44 -8255.880985] SLOW spr round 17 (radius: 20) [04:44:19 -8255.426687] SLOW spr round 18 (radius: 5) [04:45:38 -8255.426665] SLOW spr round 19 (radius: 10) [04:46:55 -8254.065046] SLOW spr round 20 (radius: 5) [04:48:08 -8254.064314] SLOW spr round 21 (radius: 10) [04:49:20 -8254.064308] SLOW spr round 22 (radius: 15) [04:50:42 -8254.062334] SLOW spr round 23 (radius: 20) [04:52:18 -8254.062330] SLOW spr round 24 (radius: 25) [04:54:16 -8254.062326] Model parameter optimization (eps = 0.100000) [04:54:20] [worker #0] ML tree search #9, logLikelihood: -8253.982355 [04:54:20 -81410.864132] Initial branch length optimization [04:54:22 -63485.490273] Model parameter optimization (eps = 10.000000) [04:54:39 -63066.606351] AUTODETECT spr round 1 (radius: 5) [04:55:56 -30057.757306] AUTODETECT spr round 2 (radius: 10) [04:57:11 -19593.699970] AUTODETECT spr round 3 (radius: 15) [04:58:31 -14562.816896] AUTODETECT spr round 4 (radius: 20) [04:59:57 -12950.670532] AUTODETECT spr round 5 (radius: 25) [05:01:38 -11884.713751] SPR radius for FAST iterations: 25 (autodetect) [05:01:38 -11884.713751] Model parameter optimization (eps = 3.000000) [05:01:56 -11840.475604] FAST spr round 1 (radius: 25) [05:03:19 -8705.472244] FAST spr round 2 (radius: 25) [05:04:35 -8494.595061] FAST spr round 3 (radius: 25) [05:05:47 -8478.732271] FAST spr round 4 (radius: 25) [05:06:58 -8477.807106] FAST spr round 5 (radius: 25) [05:08:09 -8477.804808] Model parameter optimization (eps = 1.000000) [05:08:23 -8474.789007] SLOW spr round 1 (radius: 5) [05:09:36 -8472.912084] SLOW spr round 2 (radius: 5) [05:10:47 -8472.438015] SLOW spr round 3 (radius: 5) [05:11:58 -8472.437943] SLOW spr round 4 (radius: 10) [05:13:07] [worker #1] ML tree search #12, logLikelihood: -7567.126053 [05:13:14 -8467.928773] SLOW spr round 5 (radius: 5) [05:14:34 -8465.139792] SLOW spr round 6 (radius: 5) [05:15:43 -8464.568462] SLOW spr round 7 (radius: 5) [05:16:51 -8464.568386] SLOW spr round 8 (radius: 10) [05:18:07 -8464.568383] SLOW spr round 9 (radius: 15) [05:19:37 -8460.909743] SLOW spr round 10 (radius: 5) [05:20:59 -8460.909700] SLOW spr round 11 (radius: 10) [05:22:19 -8460.909699] SLOW spr round 12 (radius: 15) [05:23:48 -8460.909699] SLOW spr round 13 (radius: 20) [05:25:26 -8460.909699] SLOW spr round 14 (radius: 25) [05:27:18 -8456.992896] SLOW spr round 15 (radius: 5) [05:28:36 -8456.205895] SLOW spr round 16 (radius: 5) [05:29:46 -8456.205895] SLOW spr round 17 (radius: 10) [05:30:57 -8456.205895] SLOW spr round 18 (radius: 15) [05:32:19 -8456.205817] SLOW spr round 19 (radius: 20) [05:34:00 -8456.205817] SLOW spr round 20 (radius: 25) [05:35:58 -8450.677857] SLOW spr round 21 (radius: 5) [05:37:20 -8450.677857] SLOW spr round 22 (radius: 10) [05:38:39 -8450.677857] SLOW spr round 23 (radius: 15) [05:40:03 -8450.677857] SLOW spr round 24 (radius: 20) [05:41:45 -8450.677857] SLOW spr round 25 (radius: 25) [05:43:46 -8450.677857] Model parameter optimization (eps = 0.100000) [05:43:51] [worker #0] ML tree search #11, logLikelihood: -8450.614264 [05:43:51 -80452.397451] Initial branch length optimization [05:43:53 -63481.420632] Model parameter optimization (eps = 10.000000) [05:44:20 -63140.447138] AUTODETECT spr round 1 (radius: 5) [05:45:41 -29396.238138] AUTODETECT spr round 2 (radius: 10) [05:46:57 -19376.442605] AUTODETECT spr round 3 (radius: 15) [05:48:21 -14914.683063] AUTODETECT spr round 4 (radius: 20) [05:49:50 -12201.350113] AUTODETECT spr round 5 (radius: 25) [05:51:23 -10411.427908] SPR radius for FAST iterations: 25 (autodetect) [05:51:23 -10411.427908] Model parameter optimization (eps = 3.000000) [05:51:37 -10402.421007] FAST spr round 1 (radius: 25) [05:52:58 -7676.383328] FAST spr round 2 (radius: 25) [05:54:11 -7284.693307] FAST spr round 3 (radius: 25) [05:55:22 -7230.316553] FAST spr round 4 (radius: 25) [05:56:32 -7199.501163] FAST spr round 5 (radius: 25) [05:57:37] [worker #1] ML tree search #14, logLikelihood: -7738.553121 [05:57:42 -7199.131161] FAST spr round 6 (radius: 25) [05:58:49 -7199.129730] Model parameter optimization (eps = 1.000000) [05:59:03 -7195.567095] SLOW spr round 1 (radius: 5) [06:00:13 -7192.825750] SLOW spr round 2 (radius: 5) [06:01:22 -7192.824386] SLOW spr round 3 (radius: 10) [06:02:36 -7191.002639] SLOW spr round 4 (radius: 5) [06:03:52 -7190.787410] SLOW spr round 5 (radius: 5) [06:05:01 -7190.787285] SLOW spr round 6 (radius: 10) [06:06:15 -7189.357423] SLOW spr round 7 (radius: 5) [06:07:30 -7187.929413] SLOW spr round 8 (radius: 5) [06:08:38 -7187.929252] SLOW spr round 9 (radius: 10) [06:09:49 -7187.929101] SLOW spr round 10 (radius: 15) [06:11:14 -7167.294472] SLOW spr round 11 (radius: 5) [06:12:33 -7164.659971] SLOW spr round 12 (radius: 5) [06:13:46 -7164.659651] SLOW spr round 13 (radius: 10) [06:14:58 -7164.659521] SLOW spr round 14 (radius: 15) [06:16:22 -7164.659368] SLOW spr round 15 (radius: 20) [06:18:02 -7164.297561] SLOW spr round 16 (radius: 5) [06:19:19 -7164.297435] SLOW spr round 17 (radius: 10) [06:20:39 -7161.246342] SLOW spr round 18 (radius: 5) [06:21:54 -7161.009146] SLOW spr round 19 (radius: 5) [06:23:03 -7161.008847] SLOW spr round 20 (radius: 10) [06:24:16 -7161.008726] SLOW spr round 21 (radius: 15) [06:25:46 -7160.464956] SLOW spr round 22 (radius: 5) [06:27:02 -7160.464623] SLOW spr round 23 (radius: 10) [06:28:13 -7160.464496] SLOW spr round 24 (radius: 15) [06:29:35 -7160.464373] SLOW spr round 25 (radius: 20) [06:31:13 -7160.463580] SLOW spr round 26 (radius: 25) [06:33:11 -7139.208960] SLOW spr round 27 (radius: 5) [06:34:31 -7134.369559] SLOW spr round 28 (radius: 5) [06:35:45 -7105.746925] SLOW spr round 29 (radius: 5) [06:36:52 -7099.799746] SLOW spr round 30 (radius: 5) [06:37:58 -7099.799431] SLOW spr round 31 (radius: 10) [06:39:08 -7099.799307] SLOW spr round 32 (radius: 15) [06:40:30 -7099.799188] SLOW spr round 33 (radius: 20) [06:42:00 -7099.799068] SLOW spr round 34 (radius: 25) [06:43:53 -7099.798948] Model parameter optimization (eps = 0.100000) [06:44:02] [worker #0] ML tree search #13, logLikelihood: -7099.294802 [06:44:02 -80090.284710] Initial branch length optimization [06:44:04 -63011.469303] Model parameter optimization (eps = 10.000000) [06:44:32 -62632.645468] AUTODETECT spr round 1 (radius: 5) [06:45:50 -28967.787841] AUTODETECT spr round 2 (radius: 10) [06:47:04 -19615.968443] AUTODETECT spr round 3 (radius: 15) [06:48:26 -15313.346065] AUTODETECT spr round 4 (radius: 20) [06:49:57 -13397.993068] AUTODETECT spr round 5 (radius: 25) [06:51:30 -11704.374480] SPR radius for FAST iterations: 25 (autodetect) [06:51:30 -11704.374480] Model parameter optimization (eps = 3.000000) [06:51:48 -11669.832793] FAST spr round 1 (radius: 25) [06:53:07 -9652.684632] FAST spr round 2 (radius: 25) [06:54:18 -9042.942309] FAST spr round 3 (radius: 25) [06:55:32 -8661.109635] FAST spr round 4 (radius: 25) [06:56:42 -8607.005671] FAST spr round 5 (radius: 25) [06:57:50 -8567.793746] FAST spr round 6 (radius: 25) [06:58:56 -8567.331447] FAST spr round 7 (radius: 25) [07:00:02 -8567.329276] Model parameter optimization (eps = 1.000000) [07:00:15 -8565.966387] SLOW spr round 1 (radius: 5) [07:01:21 -8558.931964] SLOW spr round 2 (radius: 5) [07:02:26 -8558.543885] SLOW spr round 3 (radius: 5) [07:03:30 -8556.717486] SLOW spr round 4 (radius: 5) [07:04:33 -8556.717484] SLOW spr round 5 (radius: 10) [07:05:44 -8540.392751] SLOW spr round 6 (radius: 5) [07:06:58 -8531.179488] SLOW spr round 7 (radius: 5) [07:08:04 -8531.118998] SLOW spr round 8 (radius: 10) [07:09:13 -8531.116636] SLOW spr round 9 (radius: 15) [07:10:38 -8467.080221] SLOW spr round 10 (radius: 5) [07:11:57 -8418.037097] SLOW spr round 11 (radius: 5) [07:13:06 -8412.220663] SLOW spr round 12 (radius: 5) [07:14:10] [worker #1] ML tree search #16, logLikelihood: -7089.265725 [07:14:13 -8412.220654] SLOW spr round 13 (radius: 10) [07:15:26 -8403.110467] SLOW spr round 14 (radius: 5) [07:16:40 -8394.766981] SLOW spr round 15 (radius: 5) [07:17:48 -8394.764653] SLOW spr round 16 (radius: 10) [07:19:00 -8394.764318] SLOW spr round 17 (radius: 15) [07:20:23 -8394.563653] SLOW spr round 18 (radius: 5) [07:21:42 -8289.684367] SLOW spr round 19 (radius: 5) [07:22:51 -8285.767882] SLOW spr round 20 (radius: 5) [07:23:57 -8285.767852] SLOW spr round 21 (radius: 10) [07:25:07 -8283.295891] SLOW spr round 22 (radius: 5) [07:26:19 -8283.295890] SLOW spr round 23 (radius: 10) [07:27:31 -8283.295890] SLOW spr round 24 (radius: 15) [07:28:51 -8283.295890] SLOW spr round 25 (radius: 20) [07:30:25 -8274.796866] SLOW spr round 26 (radius: 5) [07:31:43 -8256.765377] SLOW spr round 27 (radius: 5) [07:32:53 -8256.765368] SLOW spr round 28 (radius: 10) [07:34:02 -8256.765362] SLOW spr round 29 (radius: 15) [07:35:23 -8255.111035] SLOW spr round 30 (radius: 5) [07:36:39 -8254.938611] SLOW spr round 31 (radius: 5) [07:37:47 -8254.938586] SLOW spr round 32 (radius: 10) [07:38:56 -8254.938586] SLOW spr round 33 (radius: 15) [07:40:18 -8254.938586] SLOW spr round 34 (radius: 20) [07:41:49 -8254.938586] SLOW spr round 35 (radius: 25) [07:43:41 -8254.938586] Model parameter optimization (eps = 0.100000) [07:43:51] [worker #0] ML tree search #15, logLikelihood: -8254.366664 [07:43:51 -79589.831010] Initial branch length optimization [07:43:53 -61947.305229] Model parameter optimization (eps = 10.000000) [07:44:11 -61583.300490] AUTODETECT spr round 1 (radius: 5) [07:45:26 -29558.204419] AUTODETECT spr round 2 (radius: 10) [07:46:40 -18982.419961] AUTODETECT spr round 3 (radius: 15) [07:47:55 -14229.266095] AUTODETECT spr round 4 (radius: 20) [07:49:12 -11763.655703] AUTODETECT spr round 5 (radius: 25) [07:50:45 -9412.771126] SPR radius for FAST iterations: 25 (autodetect) [07:50:45 -9412.771126] Model parameter optimization (eps = 3.000000) [07:51:05 -9375.782325] FAST spr round 1 (radius: 25) [07:52:24 -7396.839436] FAST spr round 2 (radius: 25) [07:53:34 -7221.244371] FAST spr round 3 (radius: 25) [07:54:43 -7203.631650] FAST spr round 4 (radius: 25) [07:55:50 -7203.357356] FAST spr round 5 (radius: 25) [07:56:55 -7203.357187] Model parameter optimization (eps = 1.000000) [07:57:10 -7199.400380] SLOW spr round 1 (radius: 5) [07:58:18 -7196.980240] SLOW spr round 2 (radius: 5) [07:59:23 -7196.979390] SLOW spr round 3 (radius: 10) [08:00:34 -7193.989452] SLOW spr round 4 (radius: 5) [08:01:46 -7190.713478] SLOW spr round 5 (radius: 5) [08:02:53 -7190.553310] SLOW spr round 6 (radius: 5) [08:03:59 -7190.553281] SLOW spr round 7 (radius: 10) [08:05:10 -7188.427153] SLOW spr round 8 (radius: 5) [08:06:22 -7188.427152] SLOW spr round 9 (radius: 10) [08:07:34 -7179.433559] SLOW spr round 10 (radius: 5) [08:08:43 -7179.433092] SLOW spr round 11 (radius: 10) [08:09:51 -7179.433045] SLOW spr round 12 (radius: 15) [08:11:10 -7159.020190] SLOW spr round 13 (radius: 5) [08:12:25 -7144.457242] SLOW spr round 14 (radius: 5) [08:13:32 -7106.958096] SLOW spr round 15 (radius: 5) [08:14:38 -7101.965157] SLOW spr round 16 (radius: 5) [08:15:43 -7101.201465] SLOW spr round 17 (radius: 5) [08:16:46 -7101.046875] SLOW spr round 18 (radius: 5) [08:17:49 -7101.046723] SLOW spr round 19 (radius: 10) [08:18:19] [worker #1] ML tree search #18, logLikelihood: -7194.303094 [08:18:57 -7101.046723] SLOW spr round 20 (radius: 15) [08:20:20 -7101.046723] SLOW spr round 21 (radius: 20) [08:21:58 -7100.093330] SLOW spr round 22 (radius: 5) [08:23:12 -7100.091230] SLOW spr round 23 (radius: 10) [08:24:24 -7098.149351] SLOW spr round 24 (radius: 5) [08:25:32 -7098.149236] SLOW spr round 25 (radius: 10) [08:26:40 -7098.149228] SLOW spr round 26 (radius: 15) [08:28:04 -7098.149227] SLOW spr round 27 (radius: 20) [08:29:44 -7098.149227] SLOW spr round 28 (radius: 25) [08:31:48 -7098.149227] Model parameter optimization (eps = 0.100000) [08:31:58] [worker #0] ML tree search #17, logLikelihood: -7097.791595 [08:31:58 -80392.917902] Initial branch length optimization [08:32:00 -62607.681301] Model parameter optimization (eps = 10.000000) [08:32:17 -62240.926330] AUTODETECT spr round 1 (radius: 5) [08:33:34 -28271.245727] AUTODETECT spr round 2 (radius: 10) [08:34:49 -18272.540280] AUTODETECT spr round 3 (radius: 15) [08:36:08 -14226.269681] AUTODETECT spr round 4 (radius: 20) [08:37:32 -11869.259805] AUTODETECT spr round 5 (radius: 25) [08:39:05 -11025.860025] SPR radius for FAST iterations: 25 (autodetect) [08:39:05 -11025.860025] Model parameter optimization (eps = 3.000000) [08:39:21 -11000.108209] FAST spr round 1 (radius: 25) [08:40:35 -8846.042296] FAST spr round 2 (radius: 25) [08:41:41 -8539.474466] FAST spr round 3 (radius: 25) [08:42:50 -8518.248561] FAST spr round 4 (radius: 25) [08:43:59 -8406.779287] FAST spr round 5 (radius: 25) [08:45:06 -8329.329576] FAST spr round 6 (radius: 25) [08:46:12 -8322.870572] FAST spr round 7 (radius: 25) [08:47:16 -8322.735961] FAST spr round 8 (radius: 25) [08:48:19 -8321.613589] FAST spr round 9 (radius: 25) [08:49:22 -8321.613532] Model parameter optimization (eps = 1.000000) [08:49:33 -8319.887856] SLOW spr round 1 (radius: 5) [08:50:42 -8317.669030] SLOW spr round 2 (radius: 5) [08:51:51 -8317.668292] SLOW spr round 3 (radius: 10) [08:53:07 -8276.044945] SLOW spr round 4 (radius: 5) [08:54:26 -8255.389291] SLOW spr round 5 (radius: 5) [08:55:33 -8255.362387] SLOW spr round 6 (radius: 10) [08:56:44 -8255.359989] SLOW spr round 7 (radius: 15) [08:58:08 -8254.416637] SLOW spr round 8 (radius: 5) [08:59:28 -8254.416602] SLOW spr round 9 (radius: 10) [09:00:44 -8254.416601] SLOW spr round 10 (radius: 15) [09:02:06 -8254.416601] SLOW spr round 11 (radius: 20) [09:03:44 -8253.292213] SLOW spr round 12 (radius: 5) [09:05:04 -8252.512392] SLOW spr round 13 (radius: 5) [09:06:14 -8252.512242] SLOW spr round 14 (radius: 10) [09:07:22 -8252.512241] SLOW spr round 15 (radius: 15) [09:08:40 -8252.512241] SLOW spr round 16 (radius: 20) [09:10:14 -8252.512241] SLOW spr round 17 (radius: 25) [09:12:00 -8252.348353] SLOW spr round 18 (radius: 5) [09:13:18 -8252.337184] SLOW spr round 19 (radius: 10) [09:14:33 -8252.325527] SLOW spr round 20 (radius: 15) [09:15:53 -8252.324594] SLOW spr round 21 (radius: 20) [09:16:56] [worker #1] ML tree search #20, logLikelihood: -7906.058206 [09:17:27 -8252.324468] SLOW spr round 22 (radius: 25) [09:19:16 -8252.324456] Model parameter optimization (eps = 0.100000) [09:19:25] [worker #0] ML tree search #19, logLikelihood: -8251.998677 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.373942,0.246374) (0.218468,0.467257) (0.329634,1.278481) (0.077957,4.930430) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -7089.265725 AIC score: 18148.531450 / AICc score: 7902568.531450 / BIC score: 22800.985212 Free parameters (model + branch lengths): 1985 WARNING: Number of free parameters (K=1985) is larger than alignment size (n=77). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 717 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35711/3_mltree/P35711.raxml.log Analysis started: 08-Jul-2021 00:41:01 / finished: 08-Jul-2021 10:00:28 Elapsed time: 33566.191 seconds Consumed energy: 1842.581 Wh (= 9 km in an electric car, or 46 km with an e-scooter!)