RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:20:51 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/2_msa/P35453_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/3_mltree/P35453.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805651 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/2_msa/P35453_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 343 sites WARNING: Sequences tr_A0A1D5P370_A0A1D5P370_CHICK_9031 and tr_A0A226MK88_A0A226MK88_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PZJ7_A0A1D5PZJ7_CHICK_9031 and tr_A0A226MJZ0_A0A226MJZ0_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_U3J1P0_U3J1P0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A0Q3MG74_A0A0Q3MG74_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A093SD98_A0A093SD98_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A091V2Q1_A0A091V2Q1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A093JSC3_A0A093JSC3_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A099Z6J2_A0A099Z6J2_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A091FP05_A0A091FP05_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A0A0AWU8_A0A0A0AWU8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A2I0LSF5_A0A2I0LSF5_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A093GJH9_A0A093GJH9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A091HIY0_A0A091HIY0_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1BQM6_E1BQM6_CHICK_9031 and tr_A0A1V4JQ95_A0A1V4JQ95_PATFA_372326 are exactly identical! WARNING: Sequences sp_P24341_HXD10_CHICK_9031 and tr_G1NBH5_G1NBH5_MELGA_9103 are exactly identical! WARNING: Sequences sp_P20615_HXB9_MOUSE_10090 and tr_D3ZW24_D3ZW24_RAT_10116 are exactly identical! WARNING: Sequences sp_P31313_HXC11_MOUSE_10090 and tr_D4ACL0_D4ACL0_RAT_10116 are exactly identical! WARNING: Sequences sp_P31313_HXC11_MOUSE_10090 and tr_F7IAK5_F7IAK5_CALJA_9483 are exactly identical! WARNING: Sequences sp_P50207_HXC13_MOUSE_10090 and tr_D3ZKV8_D3ZKV8_RAT_10116 are exactly identical! WARNING: Sequences sp_P70217_HXD13_MOUSE_10090 and tr_A0A1U7QDD6_A0A1U7QDD6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q62424_HXA13_MOUSE_10090 and tr_A0A0G2K5C1_A0A0G2K5C1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y0D2_M3Y0D2_MUSPF_9669 and tr_A0A3Q0E4A5_A0A3Q0E4A5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y3C7_M3Y3C7_MUSPF_9669 and tr_F6PR27_F6PR27_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y3C7_M3Y3C7_MUSPF_9669 and tr_A0A2I2UWQ7_A0A2I2UWQ7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y3C7_M3Y3C7_MUSPF_9669 and tr_A0A2U3XB92_A0A2U3XB92_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y3C7_M3Y3C7_MUSPF_9669 and tr_A0A2Y9L1Z3_A0A2Y9L1Z3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y3D7_M3Y3D7_MUSPF_9669 and tr_A0A2U3WCP2_A0A2U3WCP2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y3D7_M3Y3D7_MUSPF_9669 and tr_A0A2U3XBD1_A0A2U3XBD1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y3D7_M3Y3D7_MUSPF_9669 and tr_A0A2Y9KPQ5_A0A2Y9KPQ5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_H2NVI3_H2NVI3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_E2RQ11_E2RQ11_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_H2R461_H2R461_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_I3ME45_I3ME45_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_F7BEM9_F7BEM9_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A287BF76_A0A287BF76_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_D2H571_D2H571_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_E1BIU9_E1BIU9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2I2UNR4_A0A2I2UNR4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A096P431_A0A096P431_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A0D9S3T5_A0A0D9S3T5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A1S3A675_A0A1S3A675_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A1U7U5S1_A0A1U7U5S1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2K5KIB3_A0A2K5KIB3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2K6ECZ2_A0A2K6ECZ2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2K5YBE1_A0A2K5YBE1_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2R8ZZY4_A0A2R8ZZY4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YV60_M3YV60_MUSPF_9669 and tr_A0A2Y9JW86_A0A2Y9JW86_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1S9M9_G1S9M9_NOMLE_61853 and tr_H2PMK0_H2PMK0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S9M9_G1S9M9_NOMLE_61853 and tr_I3N1S3_I3N1S3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1S9M9_G1S9M9_NOMLE_61853 and tr_A0A286XI10_A0A286XI10_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1S9M9_G1S9M9_NOMLE_61853 and tr_A0A0D9RP95_A0A0D9RP95_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1S9M9_G1S9M9_NOMLE_61853 and tr_A0A384BQ10_A0A384BQ10_URSMA_29073 are exactly identical! WARNING: Sequences tr_G3QG72_G3QG72_GORGO_9595 and sp_P35452_HXD12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHS9_G3QHS9_GORGO_9595 and tr_H2NVI5_H2NVI5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QHS9_G3QHS9_GORGO_9595 and tr_H2QDC5_H2QDC5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QHS9_G3QHS9_GORGO_9595 and sp_Q92826_HXB13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHS9_G3QHS9_GORGO_9595 and tr_G7PU80_G7PU80_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QHS9_G3QHS9_GORGO_9595 and tr_A0A2R8ZVZ6_A0A2R8ZVZ6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_H2NHI5_H2NHI5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_H2Q630_H2Q630_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_H0XRA6_H0XRA6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_F6S5W5_F6S5W5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_A0A096NC80_A0A096NC80_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_A0A0D9QZH8_A0A0D9QZH8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_A0A2K5NKS7_A0A2K5NKS7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_A0A2K6BBN9_A0A2K6BBN9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RNH1_G3RNH1_GORGO_9595 and tr_A0A2K5Z0S8_A0A2K5Z0S8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3SBM9_G3SBM9_GORGO_9595 and tr_H2NHI6_H2NHI6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3SBM9_G3SBM9_GORGO_9595 and tr_H2Q631_H2Q631_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SBM9_G3SBM9_GORGO_9595 and tr_I3N5W7_I3N5W7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3SBM9_G3SBM9_GORGO_9595 and tr_A0A1U7Q9W1_A0A1U7Q9W1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3SBM9_G3SBM9_GORGO_9595 and tr_A0A2R9CK06_A0A2R9CK06_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SJ79_G3SJ79_GORGO_9595 and tr_H2PMJ9_H2PMJ9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3SJ79_G3SJ79_GORGO_9595 and tr_A0A2I3SJN7_A0A2I3SJN7_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SJ79_G3SJ79_GORGO_9595 and tr_K7B2D1_K7B2D1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SJ79_G3SJ79_GORGO_9595 and sp_P31270_HXA11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1NBH7_G1NBH7_MELGA_9103 and tr_A0A226NE85_A0A226NE85_CALSU_9009 are exactly identical! WARNING: Sequences tr_U3KM50_U3KM50_RABIT_9986 and tr_L5K052_L5K052_PTEAL_9402 are exactly identical! WARNING: Sequences tr_U3KM50_U3KM50_RABIT_9986 and tr_A0A2U3Y7B7_A0A2U3Y7B7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R114_E2R114_CANLF_9615 and tr_A0A1S2ZZB9_A0A1S2ZZB9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E2R114_E2R114_CANLF_9615 and tr_A0A2U3XJC9_A0A2U3XJC9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R114_E2R114_CANLF_9615 and tr_A0A2Y9JHL6_A0A2Y9JHL6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2RMK2_E2RMK2_CANLF_9615 and sp_P31277_HXD11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E2RMK2_E2RMK2_CANLF_9615 and tr_M3WXQ8_M3WXQ8_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RMK2_E2RMK2_CANLF_9615 and tr_A0A0D9RPP1_A0A0D9RPP1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E2RMK2_E2RMK2_CANLF_9615 and tr_A0A2Y9JF08_A0A2Y9JF08_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2Q629_H2Q629_PANTR_9598 and sp_P31276_HXC13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2Q629_H2Q629_PANTR_9598 and tr_A0A2K5KS27_A0A2K5KS27_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2Q629_H2Q629_PANTR_9598 and tr_A0A2K6E3B7_A0A2K6E3B7_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2Q629_H2Q629_PANTR_9598 and tr_A0A2R9B6H9_A0A2R9B6H9_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R5F8_H2R5F8_PANTR_9598 and sp_P31271_HXA13_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R5F8_H2R5F8_PANTR_9598 and tr_A0A0D9RPA9_A0A0D9RPA9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2R5F8_H2R5F8_PANTR_9598 and tr_A0A2K6DZD3_A0A2K6DZD3_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2RG81_H2RG81_PANTR_9598 and tr_A0A2R8ZJK8_A0A2R8ZJK8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7E2Q8_F7E2Q8_MONDO_13616 and tr_G3WHG0_G3WHG0_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7DUV9_F7DUV9_HORSE_9796 and tr_W5QED9_W5QED9_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3ZDX9_M3ZDX9_XIPMA_8083 and tr_A0A096LWD1_A0A096LWD1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZHE4_M3ZHE4_XIPMA_8083 and tr_A0A087X841_A0A087X841_POEFO_48698 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_B0VXK9_B0VXK9_CALJA_9483 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_E1BNP2_E1BNP2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A9L944_A9L944_PAPAN_9555 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A0D9RPA1_A0A0D9RPA1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2K5KHZ1_A0A2K5KHZ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2K6BNF1_A0A2K6BNF1_MACNE_9545 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2K5Z9P9_A0A2K5Z9P9_MANLE_9568 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2U3V003_A0A2U3V003_TURTR_9739 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2Y9DMQ6_A0A2Y9DMQ6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2Y9PQI9_A0A2Y9PQI9_DELLE_9749 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A2Y9F0S6_A0A2Y9F0S6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B5SNP6_B5SNP6_OTOGA_30611 and tr_A0A383Z961_A0A383Z961_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2V6V6_H2V6V6_TAKRU_31033 and sp_Q1KKT2_HXDCA_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I6L6Y0_I6L6Y0_TAKRU_31033 and sp_Q1KKV2_HXCBA_TAKRU_31033 are exactly identical! WARNING: Sequences tr_F7GS07_F7GS07_MACMU_9544 and tr_A0A2K6AN90_A0A2K6AN90_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A091ETP5_A0A091ETP5_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A093QSG2_A0A093QSG2_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A091UUM4_A0A091UUM4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A087R0P2_A0A087R0P2_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A093HQE1_A0A093HQE1_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A091W459_A0A091W459_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A099Z432_A0A099Z432_TINGU_94827 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A0A0A3I6_A0A0A0A3I6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A093GZ68_A0A093GZ68_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZF35_H0ZF35_TAEGU_59729 and tr_A0A091HPC4_A0A091HPC4_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZF41_H0ZF41_TAEGU_59729 and tr_A0A091FE97_A0A091FE97_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1SFN7_F1SFN7_PIG_9823 and tr_E1BEV3_E1BEV3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1SFN7_F1SFN7_PIG_9823 and tr_M3X3D7_M3X3D7_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1SFN7_F1SFN7_PIG_9823 and tr_A0A2Y9FL69_A0A2Y9FL69_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1SFN7_F1SFN7_PIG_9823 and tr_A0A383ZWW7_A0A383ZWW7_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1SFN9_F1SFN9_PIG_9823 and tr_A0A2U3UYQ0_A0A2U3UYQ0_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1SFN9_F1SFN9_PIG_9823 and tr_A0A2Y9N1Z7_A0A2Y9N1Z7_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1SFN9_F1SFN9_PIG_9823 and tr_A0A2Y9FLC2_A0A2Y9FLC2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_I3LR63_I3LR63_PIG_9823 and tr_A0A337SUC2_A0A337SUC2_FELCA_9685 are exactly identical! WARNING: Sequences tr_I3LR63_I3LR63_PIG_9823 and tr_A0A2Y9PF84_A0A2Y9PF84_DELLE_9749 are exactly identical! WARNING: Sequences tr_L5JZ42_L5JZ42_PTEAL_9402 and tr_A0A384ASZ6_A0A384ASZ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_U3K465_U3K465_FICAL_59894 and tr_A0A091G0R2_A0A091G0R2_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3IMQ7_U3IMQ7_ANAPL_8839 and tr_A0A093SWJ4_A0A093SWJ4_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3IMQ7_U3IMQ7_ANAPL_8839 and tr_A0A091UW34_A0A091UW34_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3IMQ7_U3IMQ7_ANAPL_8839 and tr_A0A087R0P4_A0A087R0P4_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3IMQ7_U3IMQ7_ANAPL_8839 and tr_A0A091FSY3_A0A091FSY3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A096MZK9_A0A096MZK9_PAPAN_9555 and tr_A0A2K5LTD2_A0A2K5LTD2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MZK9_A0A096MZK9_PAPAN_9555 and tr_A0A2K5YM84_A0A2K5YM84_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9QZH7_A0A0D9QZH7_CHLSB_60711 and tr_A0A2K6DKI1_A0A2K6DKI1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9QZH7_A0A0D9QZH7_CHLSB_60711 and tr_A0A2K5Z1H6_A0A2K5Z1H6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151LZX9_A0A151LZX9_ALLMI_8496 and tr_A0A1U7RBQ7_A0A1U7RBQ7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P5I6_A0A151P5I6_ALLMI_8496 and tr_A0A1U7S7N4_A0A1U7S7N4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A091J5G7_A0A091J5G7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A091VI64_A0A091VI64_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A087R093_A0A087R093_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A093HL41_A0A093HL41_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A091VFX8_A0A091VFX8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A099ZMI6_A0A099ZMI6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A091GYP8_A0A091GYP8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A0A0AGG6_A0A0A0AGG6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A093GVH9_A0A093GVH9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091E5N5_A0A091E5N5_CORBR_85066 and tr_A0A091IGX2_A0A091IGX2_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091EIS8_A0A091EIS8_CORBR_85066 and tr_A0A093S560_A0A093S560_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EIS8_A0A091EIS8_CORBR_85066 and tr_A0A091XSX6_A0A091XSX6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EIS8_A0A091EIS8_CORBR_85066 and tr_A0A093H8T7_A0A093H8T7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EIS8_A0A091EIS8_CORBR_85066 and tr_A0A091I176_A0A091I176_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A091J594_A0A091J594_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A093Q1F5_A0A093Q1F5_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A091V4G8_A0A091V4G8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A087R7A1_A0A087R7A1_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A093HHG6_A0A093HHG6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A099YUD6_A0A099YUD6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A091G405_A0A091G405_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A0A0AMB9_A0A0A0AMB9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091ELB7_A0A091ELB7_CORBR_85066 and tr_A0A091I183_A0A091I183_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091EMM4_A0A091EMM4_CORBR_85066 and tr_A0A0A0AM01_A0A0A0AM01_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A091VIX3_A0A091VIX3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A087R095_A0A087R095_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A093HSI3_A0A093HSI3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A091WIE1_A0A091WIE1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A099ZJN4_A0A099ZJN4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A091GDJ3_A0A091GDJ3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A0A0AHN6_A0A0A0AHN6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A093GLB6_A0A093GLB6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091J4G5_A0A091J4G5_EGRGA_188379 and tr_A0A091IHV9_A0A091IHV9_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A091UWT0_A0A091UWT0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A087R0P3_A0A087R0P3_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A091W5V9_A0A091W5V9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A099Z1G5_A0A099Z1G5_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A091FRM4_A0A091FRM4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A099ZZ49_A0A099ZZ49_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A093GRY2_A0A093GRY2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A093QD58_A0A093QD58_9PASS_328815 and tr_A0A091HL82_A0A091HL82_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A093QU78_A0A093QU78_9PASS_328815 and tr_A0A091VK67_A0A091VK67_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093QU78_A0A093QU78_9PASS_328815 and tr_A0A087R096_A0A087R096_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093QU78_A0A093QU78_9PASS_328815 and tr_A0A091VF07_A0A091VF07_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093QU78_A0A093QU78_9PASS_328815 and tr_A0A0A0AEG8_A0A0A0AEG8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0MII9_A0A2I0MII9_COLLI_8932 and tr_A0A1V4K6L3_A0A1V4K6L3_PATFA_372326 are exactly identical! WARNING: Sequences tr_R7VMM2_R7VMM2_COLLI_8932 and tr_A0A1V4JH36_A0A1V4JH36_PATFA_372326 are exactly identical! WARNING: Sequences tr_R7VMR5_R7VMR5_COLLI_8932 and tr_A0A1V4JH52_A0A1V4JH52_PATFA_372326 are exactly identical! WARNING: Sequences tr_B3SUF2_B3SUF2_SALSA_8030 and tr_A0A060X9N8_A0A060X9N8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B3TDA1_B3TDA1_SALSA_8030 and tr_A0A060WE30_A0A060WE30_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MJX5_A0A226MJX5_CALSU_9009 and tr_A0A226N4C5_A0A226N4C5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MYT7_A0A226MYT7_CALSU_9009 and tr_A0A226P0X2_A0A226P0X2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MZL9_A0A226MZL9_CALSU_9009 and tr_A0A226NZM9_A0A226NZM9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N7Q1_A0A226N7Q1_CALSU_9009 and tr_A0A226NW19_A0A226NW19_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5LSF9_A0A2K5LSF9_CERAT_9531 and tr_A0A2K6B482_A0A2K6B482_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U3UYP9_A0A2U3UYP9_TURTR_9739 and tr_A0A2Y9MZ50_A0A2Y9MZ50_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VJU5_A0A2U3VJU5_ODORO_9708 and tr_A0A2U3Z131_A0A2U3Z131_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3WJP2_A0A2U3WJP2_ODORO_9708 and tr_A0A2Y9JDY6_A0A2Y9JDY6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9LY03_A0A2Y9LY03_DELLE_9749 and tr_A0A2Y9EVF2_A0A2Y9EVF2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9MXK1_A0A2Y9MXK1_DELLE_9749 and tr_A0A2Y9FKV5_A0A2Y9FKV5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9MXK1_A0A2Y9MXK1_DELLE_9749 and tr_A0A383ZWP9_A0A383ZWP9_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 206 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.reduced.phy Alignment comprises 1 partitions and 343 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 343 Gaps: 48.12 % Invariant sites: 2.62 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/3_mltree/P35453.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 86 / 6880 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -149688.025327 [00:00:00 -149688.025327] Initial branch length optimization [00:00:01 -68841.616272] Model parameter optimization (eps = 0.100000) [00:01:07] Tree #1, final logLikelihood: -68501.860795 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.134981,0.025272) (0.205825,1.351832) (0.189339,0.362691) (0.469854,1.382719) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35453/4_raxmlng_ancestral/P35453.raxml.log Analysis started: 04-Jun-2021 14:20:51 / finished: 04-Jun-2021 14:22:02 Elapsed time: 70.817 seconds