RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 17-Jul-2021 08:20:41 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/2_msa/P35398_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/3_mltree/P35398.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626499241 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/2_msa/P35398_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 523 sites WARNING: Sequences sp_P22448_RARB_CHICK_9031 and tr_G3UUU2_G3UUU2_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q9I878_Q9I878_CHICK_9031 and tr_G1N0E5_G1N0E5_MELGA_9103 are exactly identical! WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_G1TI43_G1TI43_RABIT_9986 are exactly identical! WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_G1LMX4_G1LMX4_AILME_9646 are exactly identical! WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A2U3VJK3_A0A2U3VJK3_ODORO_9708 are exactly identical! WARNING: Sequences tr_G9KK78_G9KK78_MUSPF_9669 and tr_A0A383ZRW1_A0A383ZRW1_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Z0G0_M3Z0G0_MUSPF_9669 and tr_A0A2Y9J2B4_A0A2Y9J2B4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_G1K373_G1K373_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and sp_O18924_PPARG_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_F6T9U1_F6T9U1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_G7NYH4_G7NYH4_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_A0A0D9RBU3_A0A0D9RBU3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_A0A2K5L4H2_A0A2K5L4H2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_A0A2K6B7D4_A0A2K6B7D4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3H0K9_A0A2I3H0K9_NOMLE_61853 and tr_A0A2K6AFG8_A0A2K6AFG8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_G3S8K4_G3S8K4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2I3T0W6_A0A2I3T0W6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A1D5QJY1_A0A1D5QJY1_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2I3MGX5_A0A2I3MGX5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2K5NBP9_A0A2K5NBP9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2K6DR22_A0A2K6DR22_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2K5Z0E7_A0A2K5Z0E7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QU20_G1QU20_NOMLE_61853 and tr_A0A2R9BQB5_A0A2R9BQB5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YCE9_A0A2I2YCE9_GORGO_9595 and tr_A0A2I3SI31_A0A2I3SI31_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YCE9_A0A2I2YCE9_GORGO_9595 and sp_P37231_PPARG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YCE9_A0A2I2YCE9_GORGO_9595 and tr_A0A2R9A8K3_A0A2R9A8K3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2ZPR1_A0A2I2ZPR1_GORGO_9595 and tr_A0A2R9AUD5_A0A2R9AUD5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R2J1_G3R2J1_GORGO_9595 and tr_H2QCV8_H2QCV8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R2J1_G3R2J1_GORGO_9595 and sp_P20393_NR1D1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R2J1_G3R2J1_GORGO_9595 and tr_A0A2R9CEW1_A0A2R9CEW1_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R8H4_G3R8H4_GORGO_9595 and tr_A0A2R8ZST3_A0A2R8ZST3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0A0MPB6_A0A0A0MPB6_CANLF_9615 and sp_Q4U3Q4_PPARG_CANLF_9615 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3X0X1_A0A2U3X0X1_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2QXI5_E2QXI5_CANLF_9615 and tr_A0A2U3YN11_A0A2U3YN11_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R2A6_E2R2A6_CANLF_9615 and tr_I3MAT4_I3MAT4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_E2R2A6_E2R2A6_CANLF_9615 and tr_M3WD77_M3WD77_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1P607_F1P607_CANLF_9615 and tr_G1LN19_G1LN19_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I3T288_A0A2I3T288_PANTR_9598 and tr_A0A2R8ZTG3_A0A2R8ZTG3_PANPA_9597 are exactly identical! WARNING: Sequences sp_B3SV56_NR1D1_SHEEP_9940 and tr_W5PU23_W5PU23_SHEEP_9940 are exactly identical! WARNING: Sequences sp_B3SV56_NR1D1_SHEEP_9940 and sp_Q08E02_NR1D1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PXH0_W5PXH0_SHEEP_9940 and sp_P10276_RARA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5PXH0_W5PXH0_SHEEP_9940 and tr_F1MWQ3_F1MWQ3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PXH0_W5PXH0_SHEEP_9940 and tr_A0A0D9S321_A0A0D9S321_CHLSB_60711 are exactly identical! WARNING: Sequences tr_W5PXH0_W5PXH0_SHEEP_9940 and tr_A0A1U7UH95_A0A1U7UH95_TARSY_1868482 are exactly identical! WARNING: Sequences tr_W5Q4M7_W5Q4M7_SHEEP_9940 and sp_O18971_PPARG_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1LZZ3_F1LZZ3_RAT_10116 and tr_A0A1S3EMU1_A0A1S3EMU1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A158NJW5_A0A158NJW5_ATTCE_12957 and tr_F4WIM8_F4WIM8_ACREC_103372 are exactly identical! WARNING: Sequences tr_H0VTA6_H0VTA6_CAVPO_10141 and tr_A0A091D601_A0A091D601_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q92753_RORB_HUMAN_9606 and tr_G7PSJ8_G7PSJ8_MACFA_9541 are exactly identical! WARNING: Sequences tr_H0YYW9_H0YYW9_TAEGU_59729 and tr_U3K3J3_U3K3J3_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z0W7_H0Z0W7_TAEGU_59729 and tr_A0A218UPA3_A0A218UPA3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091E871_A0A091E871_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091JHS2_A0A091JHS2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091WKM4_A0A091WKM4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A087QRV8_A0A087QRV8_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091XXK0_A0A091XXK0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0Z4K8_H0Z4K8_TAEGU_59729 and tr_A0A091IAB5_A0A091IAB5_CALAN_9244 are exactly identical! WARNING: Sequences tr_U3D5Q9_U3D5Q9_CALJA_9483 and tr_A0A0D9RBL7_A0A0D9RBL7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1LDR7_G1LDR7_AILME_9646 and tr_M3W5I7_M3W5I7_FELCA_9685 are exactly identical! WARNING: Sequences tr_U3IFR1_U3IFR1_ANAPL_8839 and tr_A0A218VEB2_A0A218VEB2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A2I3LCF1_A0A2I3LCF1_PAPAN_9555 and tr_A0A2K6DSS4_A0A2K6DSS4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3LCF1_A0A2I3LCF1_PAPAN_9555 and tr_A0A2K5ZNM4_A0A2K5ZNM4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3MFB3_A0A2I3MFB3_PAPAN_9555 and tr_A0A2K5NL77_A0A2K5NL77_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MFB3_A0A2I3MFB3_PAPAN_9555 and tr_A0A2K6AZL1_A0A2K6AZL1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MFB3_A0A2I3MFB3_PAPAN_9555 and tr_A0A2K5XYK6_A0A2K5XYK6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A091JR95_A0A091JR95_EGRGA_188379 and tr_A0A091UPZ7_A0A091UPZ7_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JR95_A0A091JR95_EGRGA_188379 and tr_A0A0A0ARI2_A0A0A0ARI2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LTY3_A0A2I0LTY3_COLLI_8932 and tr_A0A1V4K348_A0A1V4K348_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MQP2_A0A2I0MQP2_COLLI_8932 and tr_A0A1V4KDS9_A0A1V4KDS9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CSX1_A0A0V1CSX1_TRIBR_45882 and tr_A0A0V0U9D4_A0A0V0U9D4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CVV0_A0A0V1CVV0_TRIBR_45882 and tr_A0A0V0VAB2_A0A0V0VAB2_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CVV0_A0A0V1CVV0_TRIBR_45882 and tr_A0A0V1PB73_A0A0V1PB73_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D4X9_A0A0V1D4X9_TRIBR_45882 and tr_A0A0V0VJE8_A0A0V0VJE8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D4X9_A0A0V1D4X9_TRIBR_45882 and tr_A0A0V1A020_A0A0V1A020_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D4X9_A0A0V1D4X9_TRIBR_45882 and tr_A0A0V0TQG9_A0A0V0TQG9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A195E4Z2_A0A195E4Z2_9HYME_471704 and tr_A0A195F3J9_A0A195F3J9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3JVH9_A0A1S3JVH9_LINUN_7574 and tr_A0A1S3JVP8_A0A1S3JVP8_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3JVI3_A0A1S3JVI3_LINUN_7574 and tr_A0A1S3JWD1_A0A1S3JWD1_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A2K6ASZ8_A0A2K6ASZ8_MACNE_9545 and tr_A0A2K5ZA35_A0A2K5ZA35_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4CFH0_A0A2U4CFH0_TURTR_9739 and tr_A0A2Y9LNQ6_A0A2Y9LNQ6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WEC0_A0A2U3WEC0_ODORO_9708 and tr_A0A2U3XLM9_A0A2U3XLM9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9FLF7_A0A2Y9FLF7_PHYCD_9755 and tr_A0A384AZB2_A0A384AZB2_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 82 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.reduced.phy Alignment comprises 1 partitions and 523 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 523 Gaps: 28.95 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/3_mltree/P35398.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 131 / 10480 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -142574.398620 [00:00:01 -142574.398620] Initial branch length optimization [00:00:02 -132318.925524] Model parameter optimization (eps = 0.100000) [00:00:46] Tree #1, final logLikelihood: -132171.453173 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.126102,0.166693) (0.152627,0.319480) (0.303396,0.653765) (0.417875,1.751406) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P35398/4_raxmlng_ancestral/P35398.raxml.log Analysis started: 17-Jul-2021 08:20:41 / finished: 17-Jul-2021 08:21:32 Elapsed time: 51.109 seconds