RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:01:41 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/2_msa/P35346_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/3_mltree/P35346.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622804501 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/2_msa/P35346_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 364 sites WARNING: Sequences tr_Q58G83_Q58G83_CHICK_9031 and tr_A0A226NLZ4_A0A226NLZ4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q58G83_Q58G83_CHICK_9031 and tr_A0A226PQC6_A0A226PQC6_COLVI_9014 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_R0JGP9_R0JGP9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_A0A087QRP4_A0A087QRP4_APTFO_9233 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_A0A093H0N6_A0A093H0N6_STRCA_441894 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_A0A2I0M5V3_A0A2I0M5V3_COLLI_8932 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_A0A226NJH1_A0A226NJH1_CALSU_9009 are exactly identical! WARNING: Sequences tr_R4GF58_R4GF58_CHICK_9031 and tr_A0A226PG49_A0A226PG49_COLVI_9014 are exactly identical! WARNING: Sequences sp_P35377_OPRX_MOUSE_10090 and sp_P35370_OPRX_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YGW7_M3YGW7_MUSPF_9669 and tr_A0A2Y9KC36_A0A2Y9KC36_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z770_M3Z770_MUSPF_9669 and tr_D2HTA1_D2HTA1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z770_M3Z770_MUSPF_9669 and tr_A0A2U3VWR8_A0A2U3VWR8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z770_M3Z770_MUSPF_9669 and tr_A0A2U3XEU6_A0A2U3XEU6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z770_M3Z770_MUSPF_9669 and tr_A0A2Y9IIW2_A0A2Y9IIW2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z770_M3Z770_MUSPF_9669 and tr_A0A384CCI3_A0A384CCI3_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and tr_G2HFH4_G2HFH4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and sp_P30874_SSR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and tr_A0A096NU50_A0A096NU50_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and tr_A0A2K5KYS6_A0A2K5KYS6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and tr_A0A2K5XGI8_A0A2K5XGI8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GRT4_A0A2I3GRT4_NOMLE_61853 and tr_A0A2R8ZAV2_A0A2R8ZAV2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_G1TND0_G1TND0_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A2I3RUZ1_A0A2I3RUZ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_H0VYV3_H0VYV3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and sp_P30872_SSR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A1D5Q9H2_A0A1D5Q9H2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A096MLW0_A0A096MLW0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A0D9SDH1_A0A0D9SDH1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A1S3EWD1_A0A1S3EWD1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A1U7UHF8_A0A1U7UHF8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A2K5L2Y3_A0A2K5L2Y3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A2K6ATB1_A0A2K6ATB1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A2K5XKK8_A0A2K5XKK8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YYN4_A0A2I2YYN4_GORGO_9595 and tr_A0A2R8ZDJ5_A0A2R8ZDJ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QIB9_G3QIB9_GORGO_9595 and tr_H2PYH8_H2PYH8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QIB9_G3QIB9_GORGO_9595 and sp_P41143_OPRD_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S2I3_G3S2I3_GORGO_9595 and tr_K7EUG7_K7EUG7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S2I3_G3S2I3_GORGO_9595 and sp_Q5IS39_OPRM_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S2I3_G3S2I3_GORGO_9595 and sp_P35372_OPRM_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S2I3_G3S2I3_GORGO_9595 and tr_A0A2R9CJ99_A0A2R9CJ99_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3RLS1_A0A2I3RLS1_PANTR_9598 and sp_P48146_NPBW2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3RLS1_A0A2I3RLS1_PANTR_9598 and tr_A0A2R9AT30_A0A2R9AT30_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8L4U7_A0A2J8L4U7_PANTR_9598 and sp_P41145_OPRK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8L4U7_A0A2J8L4U7_PANTR_9598 and tr_A0A2R8ZZC4_A0A2R8ZZC4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8QPP4_A0A2J8QPP4_PANTR_9598 and sp_P32745_SSR3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8QPP4_A0A2J8QPP4_PANTR_9598 and tr_A0A2R8ZR62_A0A2R8ZR62_PANPA_9597 are exactly identical! WARNING: Sequences tr_F6QWD7_F6QWD7_HORSE_9796 and tr_W5Q7Z2_W5Q7Z2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F6QWD7_F6QWD7_HORSE_9796 and tr_H0XNK5_H0XNK5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F6QWD7_F6QWD7_HORSE_9796 and tr_Q866U3_Q866U3_PIG_9823 are exactly identical! WARNING: Sequences tr_F6QWD7_F6QWD7_HORSE_9796 and tr_E1BFV6_E1BFV6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F6QWD7_F6QWD7_HORSE_9796 and tr_A0A383ZTD7_A0A383ZTD7_BALAS_310752 are exactly identical! WARNING: Sequences tr_F6XSK8_F6XSK8_MACMU_9544 and tr_A0A2K6AYY7_A0A2K6AYY7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GGP4_F7GGP4_MACMU_9544 and tr_G7PFG4_G7PFG4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H731_F7H731_MACMU_9544 and tr_A0A096N5C4_A0A096N5C4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H731_F7H731_MACMU_9544 and tr_A0A2K5KWX8_A0A2K5KWX8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H731_F7H731_MACMU_9544 and tr_A0A2K6APZ6_A0A2K6APZ6_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NJD6_G7NJD6_MACMU_9544 and tr_G7PVA5_G7PVA5_MACFA_9541 are exactly identical! WARNING: Sequences tr_H0ZAC0_H0ZAC0_TAEGU_59729 and tr_A0A218USP1_A0A218USP1_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZP54_H0ZP54_TAEGU_59729 and tr_U3KLD0_U3KLD0_FICAL_59894 are exactly identical! WARNING: Sequences tr_G7PFG5_G7PFG5_MACFA_9541 and tr_A0A2I3M177_A0A2I3M177_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PFG5_G7PFG5_MACFA_9541 and tr_A0A2K5LUS3_A0A2K5LUS3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PFG5_G7PFG5_MACFA_9541 and tr_A0A2K6AZE1_A0A2K6AZE1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PFG5_G7PFG5_MACFA_9541 and tr_A0A2K5XRM1_A0A2K5XRM1_MANLE_9568 are exactly identical! WARNING: Sequences tr_U3IUQ1_U3IUQ1_ANAPL_8839 and tr_A0A093HJS6_A0A093HJS6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A096NF12_A0A096NF12_PAPAN_9555 and tr_A0A2K5L7S7_A0A2K5L7S7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NF12_A0A096NF12_PAPAN_9555 and tr_A0A2K6D9V3_A0A2K6D9V3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096NJW0_A0A096NJW0_PAPAN_9555 and tr_A0A2K5XF28_A0A2K5XF28_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9RQC8_A0A0D9RQC8_CHLSB_60711 and tr_A0A2K5MTS1_A0A2K5MTS1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151N260_A0A151N260_ALLMI_8496 and tr_A0A1U8DA43_A0A1U8DA43_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NDX2_A0A151NDX2_ALLMI_8496 and tr_A0A1U7RCF9_A0A1U7RCF9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091E7U5_A0A091E7U5_CORBR_85066 and tr_A0A093PMK1_A0A093PMK1_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091F0S6_A0A091F0S6_CORBR_85066 and tr_A0A091URH2_A0A091URH2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091F0S6_A0A091F0S6_CORBR_85066 and tr_A0A087R660_A0A087R660_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F0S6_A0A091F0S6_CORBR_85066 and tr_A0A099ZMN4_A0A099ZMN4_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091F0S6_A0A091F0S6_CORBR_85066 and tr_A0A091FNQ6_A0A091FNQ6_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J577_A0A091J577_EGRGA_188379 and tr_A0A091VTR0_A0A091VTR0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091J577_A0A091J577_EGRGA_188379 and tr_A0A0A0B400_A0A0A0B400_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091UNX3_A0A091UNX3_NIPNI_128390 and tr_A0A093HEZ5_A0A093HEZ5_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091UNX3_A0A091UNX3_NIPNI_128390 and tr_A0A099ZX19_A0A099ZX19_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091V8G0_A0A091V8G0_NIPNI_128390 and tr_A0A0A0ANB5_A0A0A0ANB5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087RA64_A0A087RA64_APTFO_9233 and tr_A0A093G553_A0A093G553_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091WAX2_A0A091WAX2_OPIHO_30419 and tr_A0A0A0AN13_A0A0A0AN13_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091WAX2_A0A091WAX2_OPIHO_30419 and tr_A0A093J1P6_A0A093J1P6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0M7E2_A0A2I0M7E2_COLLI_8932 and tr_A0A1V4KVE7_A0A1V4KVE7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MPI5_A0A2I0MPI5_COLLI_8932 and tr_A0A226PX47_A0A226PX47_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MTG8_A0A226MTG8_CALSU_9009 and tr_A0A226P2Q5_A0A226P2Q5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NH83_A0A226NH83_CALSU_9009 and tr_A0A226PVL7_A0A226PVL7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0Q4C6_A0A2D0Q4C6_ICTPU_7998 and tr_A0A2D0Q5J0_A0A2D0Q5J0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V9D1_A0A2U3V9D1_TURTR_9739 and tr_A0A2Y9MZT5_A0A2Y9MZT5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3W1U5_A0A2U3W1U5_ODORO_9708 and tr_A0A2U3YKN6_A0A2U3YKN6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3W3R6_A0A2U3W3R6_ODORO_9708 and tr_A0A2U3Z885_A0A2U3Z885_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 91 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.reduced.phy Alignment comprises 1 partitions and 364 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 364 Gaps: 12.84 % Invariant sites: 0.82 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/3_mltree/P35346.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 91 / 7280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -100144.168764 [00:00:00 -100144.168764] Initial branch length optimization [00:00:00 -98832.483025] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -98511.492281 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.247655,0.210819) (0.262945,0.330416) (0.276416,0.944349) (0.212984,2.816526) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P35346/4_raxmlng_ancestral/P35346.raxml.log Analysis started: 04-Jun-2021 14:01:41 / finished: 04-Jun-2021 14:02:21 Elapsed time: 40.075 seconds