RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 18:04:06 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/2_msa/P35125_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/2_msa/P35125_trimmed_msa.fasta [00:00:00] Loaded alignment with 981 taxa and 20 sites WARNING: Sequences tr_V7BVG0_V7BVG0_PHAVU_3885 and tr_A0A0L9UMC3_A0A0L9UMC3_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7BVG0_V7BVG0_PHAVU_3885 and tr_A0A1S3T9J7_A0A1S3T9J7_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A061G3S4_A0A061G3S4_THECC_3641 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A0D2Q1Z3_A0A0D2Q1Z3_GOSRA_29730 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A0L9THS6_A0A0L9THS6_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A1S3V633_A0A1S3V633_VIGRR_3916 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A1U8LTF5_A0A1U8LTF5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_V7CW32_V7CW32_PHAVU_3885 and tr_A0A1U8NE55_A0A1U8NE55_GOSHI_3635 are exactly identical! WARNING: Sequences tr_V7CXX8_V7CXX8_PHAVU_3885 and tr_A0A0R0EQ48_A0A0R0EQ48_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7CXX8_V7CXX8_PHAVU_3885 and tr_K7KG49_K7KG49_SOYBN_3847 are exactly identical! WARNING: Sequences tr_V7CXX8_V7CXX8_PHAVU_3885 and tr_A0A0L9UA50_A0A0L9UA50_PHAAN_3914 are exactly identical! WARNING: Sequences tr_V7CXX8_V7CXX8_PHAVU_3885 and tr_A0A151SQD8_A0A151SQD8_CAJCA_3821 are exactly identical! WARNING: Sequences tr_V7CXX8_V7CXX8_PHAVU_3885 and tr_A0A1S3TQX1_A0A1S3TQX1_VIGRR_3916 are exactly identical! WARNING: Sequences tr_B4QRC3_B4QRC3_DROSI_7240 and sp_M9PD06_UBP32_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QRC3_B4QRC3_DROSI_7240 and tr_B4IIR9_B4IIR9_DROSE_7238 are exactly identical! WARNING: Sequences tr_E9GPR9_E9GPR9_DAPPU_6669 and tr_A0A164KPG4_A0A164KPG4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E9HA45_E9HA45_DAPPU_6669 and tr_A0A164U7Z0_A0A164U7Z0_9CRUS_35525 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_H3BGI4_H3BGI4_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A3B1ITL0_A0A3B1ITL0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A3B1JI55_A0A3B1JI55_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A1S3KKZ6_A0A1S3KKZ6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A060W231_A0A060W231_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A2D0Q967_A0A2D0Q967_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0R4IHT5_A0A0R4IHT5_DANRE_7955 and tr_A0A2D0SGB8_A0A2D0SGB8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E7EZD6_E7EZD6_DANRE_7955 and tr_A0A0N8JXJ6_A0A0N8JXJ6_9TELE_113540 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A3B3H444_A0A3B3H444_ORYLA_8090 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_I3JWC3_I3JWC3_ORENI_8128 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_H3DA64_H3DA64_TETNG_99883 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_G3PJX4_G3PJX4_GASAC_69293 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_W5KZT9_W5KZT9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_W5MCY1_W5MCY1_LEPOC_7918 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A0N8JYV9_A0A0N8JYV9_9TELE_113540 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A1S3LSP7_A0A1S3LSP7_SALSA_8030 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A1S3RIM6_A0A1S3RIM6_SALSA_8030 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A060WT17_A0A060WT17_ONCMY_8022 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A060X4M9_A0A060X4M9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A2D0SUT3_A0A2D0SUT3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_W5UAJ7_W5UAJ7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E7FCR5_E7FCR5_DANRE_7955 and tr_A0A2U9B3R0_A0A2U9B3R0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A3B3I3P8_A0A3B3I3P8_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_M4A379_M4A379_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_I3KBS9_I3KBS9_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A3B5JYX3_A0A3B5JYX3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_H3BXI0_H3BXI0_TETNG_99883 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_G3N5N0_G3N5N0_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_W5LDD2_W5LDD2_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A087XJR8_A0A087XJR8_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A1S3MC84_A0A1S3MC84_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A2I4CXV8_A0A2I4CXV8_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A060WW31_A0A060WW31_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A060XEN3_A0A060XEN3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1QPF4_F1QPF4_DANRE_7955 and tr_A0A2U9C051_A0A2U9C051_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_H2MRM1_H2MRM1_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_I3KNB0_I3KNB0_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_G3N822_G3N822_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_W5NFB1_W5NFB1_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A087YIY0_A0A087YIY0_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A0P7URR9_A0A0P7URR9_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A1S3N115_A0A1S3N115_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A1S3SGS3_A0A1S3SGS3_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A2I4CEG1_A0A2I4CEG1_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A2D0T3R2_A0A2D0T3R2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A2D0T3S1_A0A2D0T3S1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1R5Z9_F1R5Z9_DANRE_7955 and tr_A0A2D0T4M0_A0A2D0T4M0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and sp_Q8R5H1_UBP15_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_M3YZ48_M3YZ48_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1S5L1_G1S5L1_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1NZZ0_G1NZZ0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G3H9L2_G3H9L2_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G3QJX5_G3QJX5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_K7ETJ3_K7ETJ3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1NCJ5_G1NCJ5_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1K9E3_G1K9E3_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1T7U4_G1T7U4_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_E2R988_E2R988_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2I3S9E9_A0A2I3S9E9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_F6WKA0_F6WKA0_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_F6T5N4_F6T5N4_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_W5P393_W5P393_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and sp_Q9R085_UBP15_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A287DBX1_A0A287DBX1_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_H0XD45_H0XD45_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_H0UU87_H0UU87_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and sp_Q9Y4E8_UBP15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_F6QY64_F6QY64_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_K7FBV0_K7FBV0_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G3T548_G3T548_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G3WIA5_G3WIA5_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_H0Z7D2_H0Z7D2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and sp_F6Z5C0_UBP15_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_F7F8G3_F7F8G3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_F1SKD5_F1SKD5_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_H3ARA3_H3ARA3_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G1LTV4_G1LTV4_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_G7PIX8_G7PIX8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and sp_Q2HJE4_UBP15_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_L5JTT9_L5JTT9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_U3K5D8_U3K5D8_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_U3I3J2_U3I3J2_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A096MWR8_A0A096MWR8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091CXI6_A0A091CXI6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A0D9QWY1_A0A0D9QWY1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A151PF76_A0A151PF76_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091EMY9_A0A091EMY9_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091IT02_A0A091IT02_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A093SKK2_A0A093SKK2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091UY93_A0A091UY93_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A087R5J8_A0A087R5J8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A093JP65_A0A093JP65_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091VTY1_A0A091VTY1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A099Z7J9_A0A099Z7J9_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091FLP6_A0A091FLP6_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A0A0AM93_A0A0A0AM93_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2I0MJ60_A0A2I0MJ60_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A093GMJ8_A0A093GMJ8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A091IMC1_A0A091IMC1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1S2ZBQ8_A0A1S2ZBQ8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1S3FJZ4_A0A1S3FJZ4_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1L8GUE1_A0A1L8GUE1_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1L8GYR5_A0A1L8GYR5_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A3Q0DUL7_A0A3Q0DUL7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1U8D8C4_A0A1U8D8C4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A1V4J9T7_A0A1V4J9T7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A218V545_A0A218V545_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2K5KSW7_A0A2K5KSW7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2K6CCL5_A0A2K6CCL5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2K5Z615_A0A2K5Z615_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2R8Z6S5_A0A2R8Z6S5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2U4CS92_A0A2U4CS92_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2U3X2Y5_A0A2U3X2Y5_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2U3YAH3_A0A2U3YAH3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2Y9DVZ2_A0A2Y9DVZ2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2Y9KXD2_A0A2Y9KXD2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2Y9MZN5_A0A2Y9MZN5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A2Y9EME2_A0A2Y9EME2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A384BJ42_A0A384BJ42_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5P9H5_A0A1D5P9H5_CHICK_9031 and tr_A0A383ZXE2_A0A383ZXE2_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_G1MZA0_G1MZA0_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_U3JGQ2_U3JGQ2_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_U3IRP0_U3IRP0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_A0A2I0MHB0_A0A2I0MHB0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_A0A218VAK3_A0A218VAK3_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_A0A226MRD9_A0A226MRD9_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PCH8_A0A1D5PCH8_CHICK_9031 and tr_A0A226PCF3_A0A226PCF3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_G1NAB3_G1NAB3_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_G1KQF5_G1KQF5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_K7G856_K7G856_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_H0ZHY7_H0ZHY7_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_U3KCD5_U3KCD5_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_U3IPV0_U3IPV0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A151NXP4_A0A151NXP4_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A091JNW4_A0A091JNW4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A093HPS6_A0A093HPS6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A099ZM69_A0A099ZM69_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A0A0ATB0_A0A0A0ATB0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A2I0MI43_A0A2I0MI43_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A091I580_A0A091I580_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A1U8CYZ1_A0A1U8CYZ1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A1V4JNF5_A0A1V4JNF5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A218UY47_A0A218UY47_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A226MNN7_A0A226MNN7_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PDP5_A0A1D5PDP5_CHICK_9031 and tr_A0A226P2G5_A0A226P2G5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F8VPZ3_F8VPZ3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_M3YUH6_M3YUH6_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2I3GL63_A0A2I3GL63_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G1P1T4_G1P1T4_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G3R7A9_G3R7A9_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H2NSE3_H2NSE3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H2NUD0_H2NUD0_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G1N6X7_G1N6X7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H9GM17_H9GM17_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G1SX55_G1SX55_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F1PDR8_F1PDR8_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H2RB22_H2RB22_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F6S9K4_F6S9K4_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F6XLI3_F6XLI3_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F6ZE61_F6ZE61_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_W5Q884_W5Q884_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A0G2K952_A0A0G2K952_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_I3N1L9_I3N1L9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H0WMS7_H0WMS7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H0V5M2_H0V5M2_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and sp_P35125_UBP6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and sp_Q8NFA0_UBP32_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G7NI01_G7NI01_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G5AX22_G5AX22_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_K7FVU4_K7FVU4_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G3T0G3_G3T0G3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_H0ZCA4_H0ZCA4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F6WHN9_F6WHN9_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2R8MU53_A0A2R8MU53_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A287BLI1_A0A287BLI1_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G1LNI5_G1LNI5_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_G7PUI5_G7PUI5_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_F1N3S5_F1N3S5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_L5JQX4_L5JQX4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_M3X194_M3X194_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_U3JS31_U3JS31_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_U3IJM9_U3IJM9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2I3N6R8_A0A2I3N6R8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091EAB7_A0A091EAB7_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A0D9R114_A0A0D9R114_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A151N605_A0A151N605_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A0Q3P1E4_A0A0Q3P1E4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091EKL9_A0A091EKL9_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091IUB5_A0A091IUB5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A093QRF1_A0A093QRF1_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091ULF1_A0A091ULF1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A087R039_A0A087R039_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A093HMC2_A0A093HMC2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091W698_A0A091W698_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A099Z9G1_A0A099Z9G1_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091GG42_A0A091GG42_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A0A0AYG2_A0A0A0AYG2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2I0LYM6_A0A2I0LYM6_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A093FYF1_A0A093FYF1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A091HX26_A0A091HX26_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1S3EX61_A0A1S3EX61_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1L8H811_A0A1L8H811_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1L8HFW2_A0A1L8HFW2_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1U7SNH1_A0A1U7SNH1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1U8DK66_A0A1U8DK66_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A3Q0CWW8_A0A3Q0CWW8_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A1V4K1X5_A0A1V4K1X5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A218UVE0_A0A218UVE0_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A226NB85_A0A226NB85_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A226PI44_A0A226PI44_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2K5LHG2_A0A2K5LHG2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2K6DQG7_A0A2K6DQG7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2K6AC44_A0A2K6AC44_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2U4C6A7_A0A2U4C6A7_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2U3VRA0_A0A2U3VRA0_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2U3XXI7_A0A2U3XXI7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2Y9R208_A0A2Y9R208_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2Y9JW05_A0A2Y9JW05_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2Y9LMS6_A0A2Y9LMS6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A2Y9T5M8_A0A2Y9T5M8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A384CFN5_A0A384CFN5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5PUL4_A0A1D5PUL4_CHICK_9031 and tr_A0A384AT61_A0A384AT61_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_G1MU67_G1MU67_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_K7G710_K7G710_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_H0Z8H8_H0Z8H8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_U3K281_U3K281_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A0Q3M0M7_A0A0Q3M0M7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A099ZPK8_A0A099ZPK8_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A091H821_A0A091H821_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A2I0LW91_A0A2I0LW91_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A091IC41_A0A091IC41_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A1V4K8S0_A0A1V4K8S0_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A218VCK4_A0A218VCK4_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A226ME52_A0A226ME52_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NE88_F1NE88_CHICK_9031 and tr_A0A226PGQ4_A0A226PGQ4_COLVI_9014 are exactly identical! WARNING: Sequences sp_P35123_UBP4_MOUSE_10090 and tr_G3H8G1_G3H8G1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P35123_UBP4_MOUSE_10090 and tr_I3MH33_I3MH33_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P35123_UBP4_MOUSE_10090 and tr_A0A1U7QX76_A0A1U7QX76_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_M3YY94_M3YY94_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2I3HSW9_A0A2I3HSW9_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G1PD31_G1PD31_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G3RHB6_G3RHB6_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_H2N9R5_H2N9R5_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G1SSA7_G1SSA7_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_F1PAG9_F1PAG9_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2I3SEY8_A0A2I3SEY8_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_F6TIU6_F6TIU6_ORNAN_9258 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_F7GGJ4_F7GGJ4_MONDO_13616 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_F7AH87_F7AH87_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_W5PXQ7_W5PXQ7_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_D3ZL57_D3ZL57_RAT_10116 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_I3LYU6_I3LYU6_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_H0XRR5_H0XRR5_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A286Y0D7_A0A286Y0D7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and sp_Q92738_US6NL_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A1D5R538_A0A1D5R538_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G5BBE7_G5BBE7_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G3TIG0_G3TIG0_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G3WR22_G3WR22_SARHA_9305 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2R8NBZ5_A0A2R8NBZ5_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A287AQ84_A0A287AQ84_PIG_9823 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G1LDB7_G1LDB7_AILME_9646 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_G7PE75_G7PE75_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_E1B7U3_E1B7U3_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2I2UKZ4_A0A2I2UKZ4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2I3MIS9_A0A2I3MIS9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A0D9RLR4_A0A0D9RLR4_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A151NPL0_A0A151NPL0_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A1S2ZUC6_A0A1S2ZUC6_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A1S3F225_A0A1S3F225_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A3Q0E9I4_A0A3Q0E9I4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A3Q0H9U2_A0A3Q0H9U2_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A1U8CN38_A0A1U8CN38_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2K5NJ23_A0A2K5NJ23_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2K6BYJ1_A0A2K6BYJ1_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2K5ZQW2_A0A2K5ZQW2_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2R9BFS6_A0A2R9BFS6_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2U4B6G9_A0A2U4B6G9_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2U3YPI3_A0A2U3YPI3_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2Y9DRP0_A0A2Y9DRP0_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2Y9FVW6_A0A2Y9FVW6_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2Y9KRX3_A0A2Y9KRX3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2Y9NLK8_A0A2Y9NLK8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A2Y9T307_A0A2Y9T307_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A384DA28_A0A384DA28_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q80XC3_US6NL_MOUSE_10090 and tr_A0A383YX80_A0A383YX80_BALAS_310752 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_M3YP06_M3YP06_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G1QSV2_G1QSV2_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G3IBG5_G3IBG5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2I2ZER4_A0A2I2ZER4_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_H2PVG1_H2PVG1_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G1SV38_G1SV38_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_F1PWM6_F1PWM6_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2I3SZK7_A0A2I3SZK7_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_F6PT23_F6PT23_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_W5PV48_W5PV48_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and sp_Q5D006_UBP11_RAT_10116 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_H0WX95_H0WX95_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and sp_P51784_UBP11_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_F6TXQ2_F6TXQ2_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G3T943_G3T943_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_F7IS60_F7IS60_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A287AJL4_A0A287AJL4_PIG_9823 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G1M386_G1M386_AILME_9646 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_G7Q2L2_G7Q2L2_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A5PKF9_A5PKF9_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_L5L070_L5L070_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A337SJA4_A0A337SJA4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A096NC65_A0A096NC65_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A0D9RMH3_A0A0D9RMH3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A1S3WJP6_A0A1S3WJP6_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A3Q0DM91_A0A3Q0DM91_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A3Q0CD42_A0A3Q0CD42_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2K5M989_A0A2K5M989_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2K6DHI1_A0A2K6DHI1_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2K5XYX0_A0A2K5XYX0_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2R9AUF9_A0A2R9AUF9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2U4C0P5_A0A2U4C0P5_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2U3ZCA5_A0A2U3ZCA5_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2U3XL51_A0A2U3XL51_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2Y9R2E7_A0A2Y9R2E7_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2Y9JW95_A0A2Y9JW95_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2Y9LQM1_A0A2Y9LQM1_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A2Y9ELQ4_A0A2Y9ELQ4_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q99K46_UBP11_MOUSE_10090 and tr_A0A384A8X4_A0A384A8X4_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5J6U1_W5J6U1_ANODA_43151 and tr_Q16TQ0_Q16TQ0_AEDAE_7159 are exactly identical! WARNING: Sequences tr_W5J6U1_W5J6U1_ANODA_43151 and tr_A0A084W016_A0A084W016_ANOSI_74873 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G1R549_G1R549_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G3QPL2_G3QPL2_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_H2PAR9_H2PAR9_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and sp_Q5RCD3_UBP4_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_E2R6J5_E2R6J5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_H2QML3_H2QML3_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_F7C8N3_F7C8N3_MONDO_13616 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_F6UHT1_F6UHT1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_W5PX00_W5PX00_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_H0WJJ3_H0WJJ3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and sp_Q13107_UBP4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_F6Q293_F6Q293_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G3TKY5_G3TKY5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G3WTX3_G3WTX3_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_F6TSU7_F6TSU7_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A287A103_A0A287A103_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G1M1X6_G1M1X6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_G7NXU3_G7NXU3_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and sp_A6QR55_UBP4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_L5KV78_L5KV78_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2I2UQD5_A0A2I2UQD5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A096MR21_A0A096MR21_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A0D9RRF0_A0A0D9RRF0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A1S3AE75_A0A1S3AE75_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A1U7SE06_A0A1U7SE06_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2K5MWU3_A0A2K5MWU3_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2K6CS91_A0A2K6CS91_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2K6A2K7_A0A2K6A2K7_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2R9ADB3_A0A2R9ADB3_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2U4B1X3_A0A2U4B1X3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2U3VVB5_A0A2U3VVB5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2U3Z7R4_A0A2U3Z7R4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2Y9D6C5_A0A2Y9D6C5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2Y9IYF6_A0A2Y9IYF6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2Y9NHV4_A0A2Y9NHV4_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A2Y9FSU6_A0A2Y9FSU6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A384D5I9_A0A384D5I9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YQY4_M3YQY4_MUSPF_9669 and tr_A0A383Z1N3_A0A383Z1N3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1W0W265_A0A1W0W265_SORBI_4558 and tr_A0A368PV73_A0A368PV73_SETIT_4555 are exactly identical! WARNING: Sequences tr_A0A1W0W265_A0A1W0W265_SORBI_4558 and tr_A0A1D6HSL7_A0A1D6HSL7_MAIZE_4577 are exactly identical! WARNING: Sequences tr_A0A1W0W265_A0A1W0W265_SORBI_4558 and tr_A0A2T7EKV1_A0A2T7EKV1_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A1Z5R7F0_A0A1Z5R7F0_SORBI_4558 and tr_A0A1D6MVD8_A0A1D6MVD8_MAIZE_4577 are exactly identical! WARNING: Sequences tr_A0A1Z5R7F0_A0A1Z5R7F0_SORBI_4558 and tr_A0A0Q3L0A9_A0A0Q3L0A9_BRADI_15368 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_K4A5G7_K4A5G7_SETIT_4555 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_J3N125_J3N125_ORYBR_4533 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_B8BFT3_B8BFT3_ORYSI_39946 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_A0A1D6KC62_A0A1D6KC62_MAIZE_4577 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_A0A0E0EW13_A0A0E0EW13_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_I1I2V5_I1I2V5_BRADI_15368 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_A0A0D9XHX7_A0A0D9XHX7_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_Q33AW7_Q33AW7_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_C5WND1_C5WND1_SORBI_4558 and tr_A0A2T7C8R3_A0A2T7C8R3_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A3B3IEK9_A0A3B3IEK9_ORYLA_8090 and tr_M3ZU82_M3ZU82_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3IEK9_A0A3B3IEK9_ORYLA_8090 and tr_W4YK27_W4YK27_STRPU_7668 are exactly identical! WARNING: Sequences tr_A0A3B3IEK9_A0A3B3IEK9_ORYLA_8090 and tr_A0A087YK48_A0A087YK48_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B3IEK9_A0A3B3IEK9_ORYLA_8090 and tr_A0A2I4BMP4_A0A2I4BMP4_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B3IPH7_A0A3B3IPH7_ORYLA_8090 and tr_I3JTT7_I3JTT7_ORENI_8128 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_B4K1T7_B4K1T7_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A0R3P578_A0A0R3P578_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_B4MXH3_B4MXH3_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A0P8YIV2_A0A0P8YIV2_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A0Q9WKH0_A0A0Q9WKH0_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A0Q9XFS3_A0A0Q9XFS3_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A0M5J1C0_A0A0M5J1C0_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4IXP1_B4IXP1_DROGR_7222 and tr_A0A1W4VU36_A0A1W4VU36_DROFC_30025 are exactly identical! WARNING: Sequences tr_G3GVN7_G3GVN7_CRIGR_10029 and tr_K7G690_K7G690_PELSI_13735 are exactly identical! WARNING: Sequences tr_G3H9E2_G3H9E2_CRIGR_10029 and tr_A0A1S2ZC30_A0A1S2ZC30_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_A0A2I2ZW86_A0A2I2ZW86_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_G3QVN1_G3QVN1_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_G3RR13_G3RR13_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_A0A2I3TAN1_A0A2I3TAN1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_H2QBZ8_H2QBZ8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and tr_H2QCE5_H2QCE5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A0A087WVF3_TBC3D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A0A087WXS9_TBC3I_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A0A087X179_TBC3E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A0A087X1G2_TBC3K_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A6NDS4_TBC3B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_A6NER0_TBC3F_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_B9A6J9_TBC3L_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_P0C7X1_TBC3H_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_Q6DHY5_TBC3G_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_Q6IPX1_TBC3C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZHX7_A0A2I2ZHX7_GORGO_9595 and sp_Q8IZP1_TBC3A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_B7PTF9_B7PTF9_IXOSC_6945 and tr_H2ZLM9_H2ZLM9_CIOSA_51511 are exactly identical! WARNING: Sequences tr_B7PTF9_B7PTF9_IXOSC_6945 and tr_F6PJ70_F6PJ70_CIOIN_7719 are exactly identical! WARNING: Sequences tr_A7S8P2_A7S8P2_NEMVE_45351 and tr_A0A2B4SF44_A0A2B4SF44_STYPI_50429 are exactly identical! WARNING: Sequences tr_H2NSU3_H2NSU3_PONAB_9601 and tr_H2R7W8_H2R7W8_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NSU3_H2NSU3_PONAB_9601 and tr_A0A2R8ZFY5_A0A2R8ZFY5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NTF4_H2NTF4_PONAB_9601 and tr_H2NTF6_H2NTF6_PONAB_9601 are exactly identical! WARNING: Sequences tr_H2NUC6_H2NUC6_PONAB_9601 and tr_H2NV79_H2NV79_PONAB_9601 are exactly identical! WARNING: Sequences tr_H2NUC6_H2NUC6_PONAB_9601 and tr_H2NVB1_H2NVB1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1TAG9_G1TAG9_RABIT_9986 and tr_G1TEY5_G1TEY5_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TAG9_G1TAG9_RABIT_9986 and tr_G1TFL9_G1TFL9_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TAG9_G1TAG9_RABIT_9986 and tr_G1TG18_G1TG18_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TAG9_G1TAG9_RABIT_9986 and tr_G1TQ56_G1TQ56_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TAG9_G1TAG9_RABIT_9986 and tr_G1U0W5_G1U0W5_RABIT_9986 are exactly identical! WARNING: Sequences tr_G7IRH1_G7IRH1_MEDTR_3880 and tr_A0A1S2XD06_A0A1S2XD06_CICAR_3827 are exactly identical! WARNING: Sequences tr_F6V309_F6V309_ORNAN_9258 and tr_F7G7H3_F7G7H3_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6V309_F6V309_ORNAN_9258 and tr_G3VZL5_G3VZL5_SARHA_9305 are exactly identical! WARNING: Sequences tr_G4YVG2_G4YVG2_PHYSP_1094619 and tr_D0N6J9_D0N6J9_PHYIT_403677 are exactly identical! WARNING: Sequences tr_G4YVG2_G4YVG2_PHYSP_1094619 and tr_M4BUT5_M4BUT5_HYAAE_559515 are exactly identical! WARNING: Sequences tr_G4YVG2_G4YVG2_PHYSP_1094619 and tr_W2PI00_W2PI00_PHYPN_761204 are exactly identical! WARNING: Sequences tr_G4YVG2_G4YVG2_PHYSP_1094619 and tr_W2K2T9_W2K2T9_PHYPR_4792 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_G4ZHN8_G4ZHN8_PHYSP_1094619 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_D0NIR9_D0NIR9_PHYIT_403677 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_W2Q8Z5_W2Q8Z5_PHYPN_761204 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_A0A0W8C6M7_A0A0W8C6M7_PHYNI_4790 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_W2NF77_W2NF77_PHYPR_4792 are exactly identical! WARNING: Sequences tr_G4ZHM3_G4ZHM3_PHYSP_1094619 and tr_A0A329RJ36_A0A329RJ36_9STRA_29920 are exactly identical! WARNING: Sequences tr_A0A3B5PUL5_A0A3B5PUL5_XIPMA_8083 and tr_A0A087XEY3_A0A087XEY3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5PUL5_A0A3B5PUL5_XIPMA_8083 and tr_A0A2I4B9U4_A0A2I4B9U4_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A3B5PW04_A0A3B5PW04_XIPMA_8083 and tr_A0A087XYS0_A0A087XYS0_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A4T5_M4A4T5_XIPMA_8083 and tr_A0A096MCM2_A0A096MCM2_POEFO_48698 are exactly identical! WARNING: Sequences tr_K4C9B1_K4C9B1_SOLLC_4081 and tr_A0A022QEF8_A0A022QEF8_ERYGU_4155 are exactly identical! WARNING: Sequences tr_A0A368QNL8_A0A368QNL8_SETIT_4555 and tr_A0A0D9Y1M1_A0A0D9Y1M1_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_I3KAX5_I3KAX5_ORENI_8128 and tr_A0A3B5K430_A0A3B5K430_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3KAX5_I3KAX5_ORENI_8128 and tr_H3CYN4_H3CYN4_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KAX5_I3KAX5_ORENI_8128 and tr_A0A2I4AZV1_A0A2I4AZV1_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3KAX5_I3KAX5_ORENI_8128 and tr_A0A2U9BWV3_A0A2U9BWV3_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3KEV6_I3KEV6_ORENI_8128 and tr_G3Q0A8_G3Q0A8_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KEV6_I3KEV6_ORENI_8128 and tr_A0A2U9BAQ5_A0A2U9BAQ5_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3KS31_I3KS31_ORENI_8128 and tr_H2SI59_H2SI59_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3KS31_I3KS31_ORENI_8128 and tr_H3DAV3_H3DAV3_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KS31_I3KS31_ORENI_8128 and tr_G3N760_G3N760_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KS31_I3KS31_ORENI_8128 and tr_A0A2U9BGL6_A0A2U9BGL6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3N6S8_I3N6S8_ICTTR_43179 and tr_A0A1S3GQQ7_A0A1S3GQQ7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_H3CMZ5_H3CMZ5_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_G3Q5F6_G3Q5F6_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A3B1IXJ5_A0A3B1IXJ5_ASTMX_7994 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A2I4BQH6_A0A2I4BQH6_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A2D0T463_A0A2D0T463_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A2D0T466_A0A2D0T466_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A2D0T513_A0A2D0T513_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2SHZ9_H2SHZ9_TAKRU_31033 and tr_A0A2U9B2D8_A0A2U9B2D8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H3GWC2_H3GWC2_PHYRM_164328 and tr_W2QF43_W2QF43_PHYPN_761204 are exactly identical! WARNING: Sequences tr_H3GWC2_H3GWC2_PHYRM_164328 and tr_W2LK73_W2LK73_PHYPR_4792 are exactly identical! WARNING: Sequences tr_I4YJM3_I4YJM3_WALMC_671144 and tr_R9AGS2_R9AGS2_WALI9_1299270 are exactly identical! WARNING: Sequences tr_K1RE00_K1RE00_CRAGI_29159 and tr_V4ALF2_V4ALF2_LOTGI_225164 are exactly identical! WARNING: Sequences tr_K1RE00_K1RE00_CRAGI_29159 and tr_A0A0L8G3Q3_A0A0L8G3Q3_OCTBM_37653 are exactly identical! WARNING: Sequences tr_K1RE00_K1RE00_CRAGI_29159 and tr_A0A210QTU5_A0A210QTU5_MIZYE_6573 are exactly identical! WARNING: Sequences tr_H0VGI1_H0VGI1_CAVPO_10141 and tr_G5BZW1_G5BZW1_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0VGI1_H0VGI1_CAVPO_10141 and tr_A0A091D6X2_A0A091D6X2_FUKDA_885580 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0E0HWV4_A0A0E0HWV4_ORYNI_4536 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_B8B7E9_B8B7E9_ORYSI_39946 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_I1Q875_I1Q875_ORYGL_4538 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0E0E7M6_A0A0E0E7M6_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0E0Q4A2_A0A0E0Q4A2_ORYRU_4529 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0D3GMH2_A0A0D3GMH2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0E0AFZ1_A0A0E0AFZ1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0E0LHD1_A0A0E0LHD1_ORYPU_4537 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0D9WVP5_A0A0D9WVP5_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_J3MIP7_J3MIP7_ORYBR_4533 and tr_A0A0P0X2E4_A0A0P0X2E4_ORYSJ_39947 are exactly identical! WARNING: Sequences sp_Q93Y01_UBP9_ARATH_3702 and sp_Q9ZSB5_UBP10_ARATH_3702 are exactly identical! WARNING: Sequences sp_Q93Y01_UBP9_ARATH_3702 and tr_D7LYQ3_D7LYQ3_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_D7M0S9_D7M0S9_ARALL_81972 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_M4CDV3_M4CDV3_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_M4CQW4_M4CQW4_BRARP_51351 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_A0A078FUF1_A0A078FUF1_BRANA_3708 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_R0FDM1_R0FDM1_9BRAS_81985 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_V4N8W1_V4N8W1_EUTSA_72664 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_A0A0D3B286_A0A0D3B286_BRAOL_109376 are exactly identical! WARNING: Sequences sp_Q9C585_UBP8_ARATH_3702 and tr_A0A0D3EDG8_A0A0D3EDG8_BRAOL_109376 are exactly identical! WARNING: Sequences sp_Q9MAQ3_UBP11_ARATH_3702 and tr_D7KID0_D7KID0_ARALL_81972 are exactly identical! WARNING: Sequences tr_A0A0E0G9H8_A0A0E0G9H8_ORYNI_4536 and tr_B8BN24_B8BN24_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G9H8_A0A0E0G9H8_ORYNI_4536 and tr_A0A0E0RK58_A0A0E0RK58_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A1P6CBF8_A0A1P6CBF8_BRUMA_6279 and tr_A0A0N4TZ01_A0A0N4TZ01_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1P6CBF8_A0A1P6CBF8_BRUMA_6279 and tr_A0A0R3QPX6_A0A0R3QPX6_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6Y7T7_F6Y7T7_MACMU_9544 and tr_A0A096P532_A0A096P532_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9H4T4_H9H4T4_MACMU_9544 and tr_A0A096P370_A0A096P370_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9H4T4_H9H4T4_MACMU_9544 and tr_A0A2K6EBT4_A0A2K6EBT4_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V1CY38_A0A0V1CY38_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V0WFD4_A0A0V0WFD4_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V0VEF2_A0A0V0VEF2_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V1L0J8_A0A0V1L0J8_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V0ZTP3_A0A0V0ZTP3_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V0XTW5_A0A0V0XTW5_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V1M8D4_A0A0V1M8D4_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V1P4V2_A0A0V1P4V2_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S4B4_E5S4B4_TRISP_6334 and tr_A0A0V1H749_A0A0V1H749_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A251NTB2_A0A251NTB2_PRUPE_3760 and tr_A0A2P6QES3_A0A2P6QES3_ROSCH_74649 are exactly identical! WARNING: Sequences tr_A0A251P7S9_A0A251P7S9_PRUPE_3760 and tr_W9RCB2_W9RCB2_9ROSA_981085 are exactly identical! WARNING: Sequences tr_A0A251P7S9_A0A251P7S9_PRUPE_3760 and tr_A0A2P6P473_A0A2P6P473_ROSCH_74649 are exactly identical! WARNING: Sequences tr_W4XKL7_W4XKL7_STRPU_7668 and tr_W4Z4L6_W4Z4L6_STRPU_7668 are exactly identical! WARNING: Sequences tr_H3CP22_H3CP22_TETNG_99883 and tr_A0A2U9B2Y4_A0A2U9B2Y4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_F6ZJ42_F6ZJ42_XENTR_8364 and tr_A0A1L8GTQ7_A0A1L8GTQ7_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6ZJ42_F6ZJ42_XENTR_8364 and tr_A0A1L8GZF4_A0A1L8GZF4_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7CYU6_F7CYU6_XENTR_8364 and tr_A0A1L8GDA1_A0A1L8GDA1_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7EI16_F7EI16_XENTR_8364 and tr_H3BAQ6_H3BAQ6_LATCH_7897 are exactly identical! WARNING: Sequences tr_F7EI16_F7EI16_XENTR_8364 and tr_A0A1L8GHB6_A0A1L8GHB6_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A286ZIN1_A0A286ZIN1_PIG_9823 and tr_A0A286ZN38_A0A286ZN38_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A286ZIN1_A0A286ZIN1_PIG_9823 and tr_F1S6T4_F1S6T4_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A287ANG3_A0A287ANG3_PIG_9823 and tr_I3LPM8_I3LPM8_PIG_9823 are exactly identical! WARNING: Sequences tr_B9RQ57_B9RQ57_RICCO_3988 and tr_A0A067L3C7_A0A067L3C7_JATCU_180498 are exactly identical! WARNING: Sequences tr_B9RQ57_B9RQ57_RICCO_3988 and tr_A0A2C9V083_A0A2C9V083_MANES_3983 are exactly identical! WARNING: Sequences tr_B9RYW0_B9RYW0_RICCO_3988 and tr_A0A251LN22_A0A251LN22_MANES_3983 are exactly identical! WARNING: Sequences tr_H3A3X6_H3A3X6_LATCH_7897 and tr_A0A1S3LGV0_A0A1S3LGV0_SALSA_8030 are exactly identical! WARNING: Sequences tr_H3A3X6_H3A3X6_LATCH_7897 and tr_A0A2D0QZ70_A0A2D0QZ70_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H3A3X6_H3A3X6_LATCH_7897 and tr_A0A2D0R0Y5_A0A2D0R0Y5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_I1H3M1_I1H3M1_BRADI_15368 and tr_A0A287I4J2_A0A287I4J2_HORVV_112509 are exactly identical! WARNING: Sequences tr_I1H3M1_I1H3M1_BRADI_15368 and tr_M7ZXV2_M7ZXV2_TRIUA_4572 are exactly identical! WARNING: Sequences tr_I1H3M1_I1H3M1_BRADI_15368 and tr_A0A3B6AYR0_A0A3B6AYR0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_I1H3M1_I1H3M1_BRADI_15368 and tr_A0A3B6C7T0_A0A3B6C7T0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_I1H3M1_I1H3M1_BRADI_15368 and tr_A0A3B6DC33_A0A3B6DC33_WHEAT_4565 are exactly identical! WARNING: Sequences tr_K7LVU7_K7LVU7_SOYBN_3847 and tr_K7M2Y2_K7M2Y2_SOYBN_3847 are exactly identical! WARNING: Sequences tr_K7LVU7_K7LVU7_SOYBN_3847 and tr_A0A151RLZ6_A0A151RLZ6_CAJCA_3821 are exactly identical! WARNING: Sequences tr_B3RSY1_B3RSY1_TRIAD_10228 and tr_A0A369SFT4_A0A369SFT4_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S1K4_B3S1K4_TRIAD_10228 and tr_A0A369SCV8_A0A369SCV8_9METZ_287889 are exactly identical! WARNING: Sequences tr_E0VZP2_E0VZP2_PEDHC_121224 and tr_T1JCJ1_T1JCJ1_STRMM_126957 are exactly identical! WARNING: Sequences tr_E0VZP2_E0VZP2_PEDHC_121224 and tr_T1K922_T1K922_TETUR_32264 are exactly identical! WARNING: Sequences tr_E0VZP2_E0VZP2_PEDHC_121224 and tr_A0A2J7RDB5_A0A2J7RDB5_9NEOP_105785 are exactly identical! WARNING: Sequences tr_M1AWE3_M1AWE3_SOLTU_4113 and tr_A0A1S3AUM1_A0A1S3AUM1_CUCME_3656 are exactly identical! WARNING: Sequences tr_M1AWE3_M1AWE3_SOLTU_4113 and tr_A0A2G3AD76_A0A2G3AD76_CAPAN_4072 are exactly identical! WARNING: Sequences tr_M1AWE3_M1AWE3_SOLTU_4113 and tr_A0A2G3DAA8_A0A2G3DAA8_CAPCH_80379 are exactly identical! WARNING: Sequences tr_M1AWE3_M1AWE3_SOLTU_4113 and tr_A0A103XQX0_A0A103XQX0_CYNCS_59895 are exactly identical! WARNING: Sequences tr_A0A287QA68_A0A287QA68_HORVV_112509 and tr_A0A3B6K9S2_A0A3B6K9S2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A287QA68_A0A287QA68_HORVV_112509 and tr_A0A3B6LDZ7_A0A3B6LDZ7_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A287QA68_A0A287QA68_HORVV_112509 and tr_A0A3B6MLF4_A0A3B6MLF4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4C936_M4C936_BRARP_51351 and tr_A0A0D3B809_A0A0D3B809_BRAOL_109376 are exactly identical! WARNING: Sequences tr_S2JRZ8_S2JRZ8_MUCC1_1220926 and tr_A0A0C9MJZ9_A0A0C9MJZ9_9FUNG_91626 are exactly identical! WARNING: Sequences tr_S2JRZ8_S2JRZ8_MUCC1_1220926 and tr_A0A162QC01_A0A162QC01_MUCCL_747725 are exactly identical! WARNING: Sequences tr_A0A3B1J6B1_A0A3B1J6B1_ASTMX_7994 and tr_A0A096NBI4_A0A096NBI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_W5L7Q8_W5L7Q8_ASTMX_7994 and tr_A0A2D0RY93_A0A2D0RY93_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A044VD25_A0A044VD25_ONCVO_6282 and tr_A0A182E8M6_A0A182E8M6_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067EDF5_A0A067EDF5_CITSI_2711 and tr_V4SA23_V4SA23_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067EDF5_A0A067EDF5_CITSI_2711 and tr_A0A2H5Q3D5_A0A2H5Q3D5_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067QJ02_A0A067QJ02_ZOONE_136037 and tr_A0A2J7QXN6_A0A2J7QXN6_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067QR02_A0A067QR02_ZOONE_136037 and tr_A0A2J7Q6Z9_A0A2J7Q6Z9_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A096MLA6_A0A096MLA6_PAPAN_9555 and tr_A0A096NMY9_A0A096NMY9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3MRF8_A0A2I3MRF8_PAPAN_9555 and tr_A0A2K6BNZ9_A0A2K6BNZ9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0A0KEX1_A0A0A0KEX1_CUCSA_3659 and tr_A0A1S3BME2_A0A1S3BME2_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A0LGU4_A0A0A0LGU4_CUCSA_3659 and tr_A0A1S3B6W7_A0A1S3B6W7_CUCME_3656 are exactly identical! WARNING: Sequences tr_U4TZT4_U4TZT4_DENPD_77166 and tr_U4U0K3_U4U0K3_DENPD_77166 are exactly identical! WARNING: Sequences tr_U4TZT4_U4TZT4_DENPD_77166 and tr_U4UK87_U4UK87_DENPD_77166 are exactly identical! WARNING: Sequences tr_A0A067CDX7_A0A067CDX7_SAPPC_695850 and tr_T0Q4L2_T0Q4L2_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A067CKF0_A0A067CKF0_SAPPC_695850 and tr_T0QEQ9_T0QEQ9_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A067CMJ5_A0A067CMJ5_SAPPC_695850 and tr_T0RJ49_T0RJ49_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0D2NQR6_A0A0D2NQR6_GOSRA_29730 and tr_A0A1U8HYQ0_A0A1U8HYQ0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2NQR6_A0A0D2NQR6_GOSRA_29730 and tr_A0A1U8J3T8_A0A1U8J3T8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RZR2_A0A0D2RZR2_GOSRA_29730 and tr_A0A175YFB8_A0A175YFB8_DAUCA_79200 are exactly identical! WARNING: Sequences tr_A0A0D2RZR2_A0A0D2RZR2_GOSRA_29730 and tr_A0A1U8I3T8_A0A1U8I3T8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RZR2_A0A0D2RZR2_GOSRA_29730 and tr_A0A1U8LVQ6_A0A1U8LVQ6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0A1N446_A0A0A1N446_9FUNG_58291 and tr_A0A367K8N4_A0A367K8N4_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1NT49_A0A0A1NT49_9FUNG_58291 and tr_A0A367JV79_A0A367JV79_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091JIX2_A0A091JIX2_EGRGA_188379 and tr_A0A091WBM9_A0A091WBM9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JIX2_A0A091JIX2_EGRGA_188379 and tr_A0A091WQD8_A0A091WQD8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A197KFN0_A0A197KFN0_9FUNG_1314771 and tr_A0A1Y2GM13_A0A1Y2GM13_9FUNG_64571 are exactly identical! WARNING: Sequences tr_A0A3Q0JDH9_A0A3Q0JDH9_DIACI_121845 and tr_A0A1S3IG76_A0A1S3IG76_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A3Q0JDH9_A0A3Q0JDH9_DIACI_121845 and tr_A0A2P8YB86_A0A2P8YB86_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A1S3Z7E7_A0A1S3Z7E7_TOBAC_4097 and tr_A0A1S4DI76_A0A1S4DI76_TOBAC_4097 are exactly identical! WARNING: Sequences tr_A0A1S3Z7E7_A0A1S3Z7E7_TOBAC_4097 and tr_A0A1J6IJ14_A0A1J6IJ14_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3Z7E7_A0A1S3Z7E7_TOBAC_4097 and tr_A0A1U7UXA1_A0A1U7UXA1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Z7E7_A0A1S3Z7E7_TOBAC_4097 and tr_A0A251RSD8_A0A251RSD8_HELAN_4232 are exactly identical! WARNING: Sequences tr_A0A1S3Z7E7_A0A1S3Z7E7_TOBAC_4097 and tr_A0A2J6K0P2_A0A2J6K0P2_LACSA_4236 are exactly identical! WARNING: Sequences tr_A0A1S4CYW9_A0A1S4CYW9_TOBAC_4097 and tr_A0A314LGN2_A0A314LGN2_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S4CYW9_A0A1S4CYW9_TOBAC_4097 and tr_A0A1U7Y4T0_A0A1U7Y4T0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4CYW9_A0A1S4CYW9_TOBAC_4097 and tr_A0A2G2YT54_A0A2G2YT54_CAPAN_4072 are exactly identical! WARNING: Sequences tr_A0A1S4CYW9_A0A1S4CYW9_TOBAC_4097 and tr_A0A2G3BLY3_A0A2G3BLY3_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1S3KSQ9_A0A1S3KSQ9_SALSA_8030 and tr_A0A1S3PRY6_A0A1S3PRY6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KSQ9_A0A1S3KSQ9_SALSA_8030 and tr_A0A060YB17_A0A060YB17_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LBW0_A0A1S3LBW0_SALSA_8030 and tr_A0A060W6X2_A0A060W6X2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MYE9_A0A1S3MYE9_SALSA_8030 and tr_A0A1S3SF55_A0A1S3SF55_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3MYE9_A0A1S3MYE9_SALSA_8030 and tr_A0A060VQK6_A0A060VQK6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P4K8_A0A1S3P4K8_SALSA_8030 and tr_A0A060WIA6_A0A060WIA6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1VJ66_A0A1D1VJ66_RAMVA_947166 and tr_A0A1D1VPL0_A0A1D1VPL0_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1U8HC37_A0A1U8HC37_CAPAN_4072 and tr_A0A2G3CBF9_A0A2G3CBF9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G8JDB7_A0A2G8JDB7_STIJA_307972 and tr_A0A2G8JWE0_A0A2G8JWE0_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2P5CJB3_A0A2P5CJB3_TREOI_63057 and tr_A0A2P5DJM3_A0A2P5DJM3_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2P5FKT2_A0A2P5FKT2_TREOI_63057 and tr_A0A2P5AZW2_A0A2P5AZW2_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A2P5FUC2_A0A2P5FUC2_TREOI_63057 and tr_A0A2P5BQ43_A0A2P5BQ43_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A103YFI0_A0A103YFI0_CYNCS_59895 and tr_A0A2U1KH50_A0A2U1KH50_ARTAN_35608 are exactly identical! WARNING: Duplicate sequences found: 615 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.reduced.phy Alignment comprises 1 partitions and 20 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 20 / 20 Gaps: 1.57 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 981 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 20 / 1600 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -31702.455615] Initial branch length optimization [00:00:00 -25304.136772] Model parameter optimization (eps = 10.000000) [00:00:11 -24967.334486] AUTODETECT spr round 1 (radius: 5) [00:01:01 -16291.813333] AUTODETECT spr round 2 (radius: 10) [00:01:56 -10471.404451] AUTODETECT spr round 3 (radius: 15) [00:02:58 -7469.751541] AUTODETECT spr round 4 (radius: 20) [00:04:09 -6181.830156] AUTODETECT spr round 5 (radius: 25) [00:05:22 -5828.587376] SPR radius for FAST iterations: 25 (autodetect) [00:05:22 -5828.587376] Model parameter optimization (eps = 3.000000) [00:05:42 -5800.543267] FAST spr round 1 (radius: 25) [00:06:40 -4900.662198] FAST spr round 2 (radius: 25) [00:07:36 -4717.278776] FAST spr round 3 (radius: 25) [00:08:31 -4631.869536] FAST spr round 4 (radius: 25) [00:09:25 -4624.446925] FAST spr round 5 (radius: 25) [00:10:20 -4624.446921] Model parameter optimization (eps = 1.000000) [00:10:28 -4623.163314] SLOW spr round 1 (radius: 5) [00:11:23 -4618.148209] SLOW spr round 2 (radius: 5) [00:12:18 -4618.148173] SLOW spr round 3 (radius: 10) [00:13:14 -4617.226697] SLOW spr round 4 (radius: 5) [00:14:12 -4613.087796] SLOW spr round 5 (radius: 5) [00:15:07 -4613.074434] SLOW spr round 6 (radius: 10) [00:16:04 -4613.074433] SLOW spr round 7 (radius: 15) [00:17:07 -4588.030195] SLOW spr round 8 (radius: 5) [00:18:07 -4588.029992] SLOW spr round 9 (radius: 10) [00:19:05 -4585.927577] SLOW spr round 10 (radius: 5) [00:20:01 -4585.927577] SLOW spr round 11 (radius: 10) [00:20:57 -4585.927577] SLOW spr round 12 (radius: 15) [00:22:00 -4585.927577] SLOW spr round 13 (radius: 20) [00:23:15 -4583.684170] SLOW spr round 14 (radius: 5) [00:24:15 -4583.496165] SLOW spr round 15 (radius: 5) [00:25:11 -4583.496165] SLOW spr round 16 (radius: 10) [00:26:08 -4582.152432] SLOW spr round 17 (radius: 5) [00:27:05 -4582.152432] SLOW spr round 18 (radius: 10) [00:28:02 -4582.152432] SLOW spr round 19 (radius: 15) [00:29:05 -4581.772248] SLOW spr round 20 (radius: 5) [00:30:05 -4581.772236] SLOW spr round 21 (radius: 10) [00:31:02 -4581.772236] SLOW spr round 22 (radius: 15) [00:32:05 -4581.772236] SLOW spr round 23 (radius: 20) [00:33:21 -4581.772236] SLOW spr round 24 (radius: 25) [00:34:52 -4557.375269] SLOW spr round 25 (radius: 5) [00:35:54 -4553.537523] SLOW spr round 26 (radius: 5) [00:36:50 -4518.709041] SLOW spr round 27 (radius: 5) [00:37:45 -4518.036332] SLOW spr round 28 (radius: 5) [00:38:40 -4518.035271] SLOW spr round 29 (radius: 10) [00:39:37 -4517.024808] SLOW spr round 30 (radius: 5) [00:40:34 -4516.570711] SLOW spr round 31 (radius: 5) [00:41:28 -4516.570709] SLOW spr round 32 (radius: 10) [00:42:25 -4516.570709] SLOW spr round 33 (radius: 15) [00:43:29 -4515.745886] SLOW spr round 34 (radius: 5) [00:44:28 -4515.745877] SLOW spr round 35 (radius: 10) [00:45:26 -4515.745877] SLOW spr round 36 (radius: 15) [00:46:31 -4515.745877] SLOW spr round 37 (radius: 20) [00:47:51 -4515.292593] SLOW spr round 38 (radius: 5) [00:48:53 -4515.292593] SLOW spr round 39 (radius: 10) [00:49:50 -4515.292593] SLOW spr round 40 (radius: 15) [00:50:54 -4515.292593] SLOW spr round 41 (radius: 20) [00:52:15 -4515.292593] SLOW spr round 42 (radius: 25) [00:53:46 -4515.060593] SLOW spr round 43 (radius: 5) [00:54:47 -4504.997642] SLOW spr round 44 (radius: 5) [00:55:42 -4504.993443] SLOW spr round 45 (radius: 10) [00:56:39 -4504.993382] SLOW spr round 46 (radius: 15) [00:57:44 -4504.993379] SLOW spr round 47 (radius: 20) [00:59:04 -4504.993379] SLOW spr round 48 (radius: 25) [01:00:37 -4504.993379] Model parameter optimization (eps = 0.100000) [01:00:45] ML tree search #1, logLikelihood: -4504.345412 [01:00:45 -31219.321047] Initial branch length optimization [01:00:45 -24969.959202] Model parameter optimization (eps = 10.000000) [01:01:01 -24667.676346] AUTODETECT spr round 1 (radius: 5) [01:01:51 -15941.098590] AUTODETECT spr round 2 (radius: 10) [01:02:46 -10632.863782] AUTODETECT spr round 3 (radius: 15) [01:03:47 -8528.250156] AUTODETECT spr round 4 (radius: 20) [01:04:51 -7536.770334] AUTODETECT spr round 5 (radius: 25) [01:06:00 -7114.572329] SPR radius for FAST iterations: 25 (autodetect) [01:06:00 -7114.572329] Model parameter optimization (eps = 3.000000) [01:06:12 -7078.938565] FAST spr round 1 (radius: 25) [01:07:10 -5089.867417] FAST spr round 2 (radius: 25) [01:08:06 -4854.818417] FAST spr round 3 (radius: 25) [01:09:01 -4833.843670] FAST spr round 4 (radius: 25) [01:09:55 -4832.606125] FAST spr round 5 (radius: 25) [01:10:48 -4829.462064] FAST spr round 6 (radius: 25) [01:11:42 -4829.459674] Model parameter optimization (eps = 1.000000) [01:11:49 -4825.990717] SLOW spr round 1 (radius: 5) [01:12:44 -4821.105624] SLOW spr round 2 (radius: 5) [01:13:37 -4820.978246] SLOW spr round 3 (radius: 5) [01:14:31 -4820.977660] SLOW spr round 4 (radius: 10) [01:15:27 -4813.314958] SLOW spr round 5 (radius: 5) [01:16:24 -4812.918599] SLOW spr round 6 (radius: 5) [01:17:18 -4812.918520] SLOW spr round 7 (radius: 10) [01:18:15 -4812.226065] SLOW spr round 8 (radius: 5) [01:19:12 -4812.226063] SLOW spr round 9 (radius: 10) [01:20:09 -4810.791988] SLOW spr round 10 (radius: 5) [01:21:06 -4810.791975] SLOW spr round 11 (radius: 10) [01:22:02 -4810.791974] SLOW spr round 12 (radius: 15) [01:23:05 -4782.844776] SLOW spr round 13 (radius: 5) [01:24:07 -4780.978870] SLOW spr round 14 (radius: 5) [01:25:03 -4780.978489] SLOW spr round 15 (radius: 10) [01:26:00 -4780.978488] SLOW spr round 16 (radius: 15) [01:27:02 -4780.440689] SLOW spr round 17 (radius: 5) [01:28:02 -4780.440669] SLOW spr round 18 (radius: 10) [01:29:00 -4779.564824] SLOW spr round 19 (radius: 5) [01:29:57 -4779.564770] SLOW spr round 20 (radius: 10) [01:30:54 -4779.564770] SLOW spr round 21 (radius: 15) [01:31:56 -4779.564770] SLOW spr round 22 (radius: 20) [01:33:12 -4775.863453] SLOW spr round 23 (radius: 5) [01:34:12 -4770.784698] SLOW spr round 24 (radius: 5) [01:35:08 -4770.784697] SLOW spr round 25 (radius: 10) [01:36:04 -4762.199419] SLOW spr round 26 (radius: 5) [01:37:01 -4762.199356] SLOW spr round 27 (radius: 10) [01:37:58 -4762.199354] SLOW spr round 28 (radius: 15) [01:39:01 -4759.276255] SLOW spr round 29 (radius: 5) [01:40:02 -4759.009667] SLOW spr round 30 (radius: 5) [01:40:58 -4759.009550] SLOW spr round 31 (radius: 10) [01:41:54 -4759.009550] SLOW spr round 32 (radius: 15) [01:42:58 -4759.009550] SLOW spr round 33 (radius: 20) [01:44:14 -4748.350417] SLOW spr round 34 (radius: 5) [01:45:15 -4691.907746] SLOW spr round 35 (radius: 5) [01:46:13 -4681.212111] SLOW spr round 36 (radius: 5) [01:47:07 -4681.212111] SLOW spr round 37 (radius: 10) [01:48:04 -4680.958742] SLOW spr round 38 (radius: 5) [01:49:00 -4680.958737] SLOW spr round 39 (radius: 10) [01:49:56 -4680.958737] SLOW spr round 40 (radius: 15) [01:50:59 -4680.958737] SLOW spr round 41 (radius: 20) [01:52:15 -4588.391904] SLOW spr round 42 (radius: 5) [01:53:17 -4552.137287] SLOW spr round 43 (radius: 5) [01:54:14 -4530.904728] SLOW spr round 44 (radius: 5) [01:55:09 -4530.341183] SLOW spr round 45 (radius: 5) [01:56:03 -4530.341179] SLOW spr round 46 (radius: 10) [01:56:58 -4522.125150] SLOW spr round 47 (radius: 5) [01:57:54 -4511.224800] SLOW spr round 48 (radius: 5) [01:58:48 -4511.224796] SLOW spr round 49 (radius: 10) [01:59:45 -4511.224796] SLOW spr round 50 (radius: 15) [02:00:47 -4503.449598] SLOW spr round 51 (radius: 5) [02:01:47 -4501.433285] SLOW spr round 52 (radius: 5) [02:02:43 -4501.433210] SLOW spr round 53 (radius: 10) [02:03:38 -4501.433202] SLOW spr round 54 (radius: 15) [02:04:41 -4501.433201] SLOW spr round 55 (radius: 20) [02:05:56 -4501.433201] SLOW spr round 56 (radius: 25) [02:07:28 -4499.988397] SLOW spr round 57 (radius: 5) [02:08:28 -4499.951421] SLOW spr round 58 (radius: 10) [02:09:26 -4499.928388] SLOW spr round 59 (radius: 15) [02:10:27 -4499.927676] SLOW spr round 60 (radius: 20) [02:11:40 -4499.926984] SLOW spr round 61 (radius: 25) [02:13:05 -4499.926354] Model parameter optimization (eps = 0.100000) [02:13:11] ML tree search #2, logLikelihood: -4499.480993 [02:13:11 -32078.527839] Initial branch length optimization [02:13:11 -25510.144071] Model parameter optimization (eps = 10.000000) [02:13:24 -25193.393227] AUTODETECT spr round 1 (radius: 5) [02:14:14 -15712.832495] AUTODETECT spr round 2 (radius: 10) [02:15:11 -10524.626394] AUTODETECT spr round 3 (radius: 15) [02:16:10 -7800.006900] AUTODETECT spr round 4 (radius: 20) [02:17:20 -6577.077708] AUTODETECT spr round 5 (radius: 25) [02:18:28 -6162.442457] SPR radius for FAST iterations: 25 (autodetect) [02:18:28 -6162.442457] Model parameter optimization (eps = 3.000000) [02:18:41 -6106.773227] FAST spr round 1 (radius: 25) [02:19:38 -4917.366470] FAST spr round 2 (radius: 25) [02:20:34 -4765.046209] FAST spr round 3 (radius: 25) [02:21:28 -4716.178418] FAST spr round 4 (radius: 25) [02:22:24 -4715.302836] FAST spr round 5 (radius: 25) [02:23:17 -4715.302818] Model parameter optimization (eps = 1.000000) [02:23:22 -4714.977384] SLOW spr round 1 (radius: 5) [02:24:18 -4714.044486] SLOW spr round 2 (radius: 5) [02:25:14 -4714.036954] SLOW spr round 3 (radius: 10) [02:26:10 -4713.010573] SLOW spr round 4 (radius: 5) [02:27:08 -4703.816295] SLOW spr round 5 (radius: 5) [02:28:02 -4703.816295] SLOW spr round 6 (radius: 10) [02:29:00 -4703.180619] SLOW spr round 7 (radius: 5) [02:29:57 -4703.180614] SLOW spr round 8 (radius: 10) [02:30:55 -4702.718694] SLOW spr round 9 (radius: 5) [02:31:52 -4702.718694] SLOW spr round 10 (radius: 10) [02:32:50 -4702.718694] SLOW spr round 11 (radius: 15) [02:33:51 -4700.023390] SLOW spr round 12 (radius: 5) [02:34:52 -4699.384193] SLOW spr round 13 (radius: 5) [02:35:46 -4699.384186] SLOW spr round 14 (radius: 10) [02:36:44 -4699.384186] SLOW spr round 15 (radius: 15) [02:37:45 -4699.384186] SLOW spr round 16 (radius: 20) [02:38:57 -4689.255760] SLOW spr round 17 (radius: 5) [02:39:58 -4658.878417] SLOW spr round 18 (radius: 5) [02:40:54 -4658.878417] SLOW spr round 19 (radius: 10) [02:41:50 -4658.878417] SLOW spr round 20 (radius: 15) [02:42:51 -4657.560119] SLOW spr round 21 (radius: 5) [02:43:50 -4657.560107] SLOW spr round 22 (radius: 10) [02:44:47 -4633.095555] SLOW spr round 23 (radius: 5) [02:45:42 -4633.095545] SLOW spr round 24 (radius: 10) [02:46:39 -4633.095544] SLOW spr round 25 (radius: 15) [02:47:38 -4633.095544] SLOW spr round 26 (radius: 20) [02:48:50 -4631.228824] SLOW spr round 27 (radius: 5) [02:49:49 -4631.227876] SLOW spr round 28 (radius: 10) [02:50:47 -4631.227868] SLOW spr round 29 (radius: 15) [02:51:46 -4631.227868] SLOW spr round 30 (radius: 20) [02:52:59 -4631.227868] SLOW spr round 31 (radius: 25) [02:54:17 -4628.119565] SLOW spr round 32 (radius: 5) [02:55:18 -4627.849742] SLOW spr round 33 (radius: 5) [02:56:13 -4627.849551] SLOW spr round 34 (radius: 10) [02:57:09 -4627.849549] SLOW spr round 35 (radius: 15) [02:58:09 -4627.849549] SLOW spr round 36 (radius: 20) [02:59:21 -4627.849549] SLOW spr round 37 (radius: 25) [03:00:38 -4627.849549] Model parameter optimization (eps = 0.100000) [03:00:41] ML tree search #3, logLikelihood: -4627.758507 [03:00:41 -31650.891357] Initial branch length optimization [03:00:41 -25317.097205] Model parameter optimization (eps = 10.000000) [03:00:54 -24963.141533] AUTODETECT spr round 1 (radius: 5) [03:01:44 -16522.600348] AUTODETECT spr round 2 (radius: 10) [03:02:42 -10501.169968] AUTODETECT spr round 3 (radius: 15) [03:03:43 -7667.964714] AUTODETECT spr round 4 (radius: 20) [03:04:44 -6719.212695] AUTODETECT spr round 5 (radius: 25) [03:05:53 -6349.989891] SPR radius for FAST iterations: 25 (autodetect) [03:05:53 -6349.989891] Model parameter optimization (eps = 3.000000) [03:06:01 -6344.541968] FAST spr round 1 (radius: 25) [03:06:58 -4899.091381] FAST spr round 2 (radius: 25) [03:07:53 -4746.591341] FAST spr round 3 (radius: 25) [03:08:47 -4673.578224] FAST spr round 4 (radius: 25) [03:09:40 -4671.188499] FAST spr round 5 (radius: 25) [03:10:32 -4671.187056] Model parameter optimization (eps = 1.000000) [03:10:39 -4669.838212] SLOW spr round 1 (radius: 5) [03:11:33 -4667.596338] SLOW spr round 2 (radius: 5) [03:12:29 -4649.366448] SLOW spr round 3 (radius: 5) [03:13:23 -4642.349454] SLOW spr round 4 (radius: 5) [03:14:17 -4642.349288] SLOW spr round 5 (radius: 10) [03:15:13 -4633.802028] SLOW spr round 6 (radius: 5) [03:16:10 -4633.801983] SLOW spr round 7 (radius: 10) [03:17:06 -4633.056539] SLOW spr round 8 (radius: 5) [03:18:04 -4631.713176] SLOW spr round 9 (radius: 5) [03:18:57 -4629.741880] SLOW spr round 10 (radius: 5) [03:19:51 -4629.741849] SLOW spr round 11 (radius: 10) [03:20:46 -4629.741849] SLOW spr round 12 (radius: 15) [03:21:50 -4598.781559] SLOW spr round 13 (radius: 5) [03:22:49 -4598.756252] SLOW spr round 14 (radius: 10) [03:23:46 -4598.112862] SLOW spr round 15 (radius: 5) [03:24:43 -4596.009031] SLOW spr round 16 (radius: 5) [03:25:38 -4596.008895] SLOW spr round 17 (radius: 10) [03:26:33 -4596.008892] SLOW spr round 18 (radius: 15) [03:27:38 -4588.157508] SLOW spr round 19 (radius: 5) [03:28:37 -4575.554662] SLOW spr round 20 (radius: 5) [03:29:32 -4575.554662] SLOW spr round 21 (radius: 10) [03:30:27 -4575.554662] SLOW spr round 22 (radius: 15) [03:31:30 -4574.627594] SLOW spr round 23 (radius: 5) [03:32:30 -4574.627585] SLOW spr round 24 (radius: 10) [03:33:27 -4574.627585] SLOW spr round 25 (radius: 15) [03:34:30 -4574.627585] SLOW spr round 26 (radius: 20) [03:35:45 -4570.792283] SLOW spr round 27 (radius: 5) [03:36:44 -4570.792269] SLOW spr round 28 (radius: 10) [03:37:41 -4570.792269] SLOW spr round 29 (radius: 15) [03:38:44 -4570.166084] SLOW spr round 30 (radius: 5) [03:39:45 -4570.166072] SLOW spr round 31 (radius: 10) [03:40:41 -4570.166072] SLOW spr round 32 (radius: 15) [03:41:44 -4570.166072] SLOW spr round 33 (radius: 20) [03:42:58 -4570.166072] SLOW spr round 34 (radius: 25) [03:44:22 -4570.166072] Model parameter optimization (eps = 0.100000) [03:44:29] ML tree search #4, logLikelihood: -4570.054202 [03:44:29 -31390.715390] Initial branch length optimization [03:44:29 -24996.742725] Model parameter optimization (eps = 10.000000) [03:44:42 -24653.967801] AUTODETECT spr round 1 (radius: 5) [03:45:32 -16079.991722] AUTODETECT spr round 2 (radius: 10) [03:46:30 -10127.316980] AUTODETECT spr round 3 (radius: 15) [03:47:29 -7234.075734] AUTODETECT spr round 4 (radius: 20) [03:48:36 -6174.808552] AUTODETECT spr round 5 (radius: 25) [03:49:47 -6032.267704] SPR radius for FAST iterations: 25 (autodetect) [03:49:47 -6032.267704] Model parameter optimization (eps = 3.000000) [03:49:56 -6023.366438] FAST spr round 1 (radius: 25) [03:50:53 -4788.949383] FAST spr round 2 (radius: 25) [03:51:50 -4690.646347] FAST spr round 3 (radius: 25) [03:52:43 -4690.333752] FAST spr round 4 (radius: 25) [03:53:36 -4690.330370] Model parameter optimization (eps = 1.000000) [03:53:42 -4689.972521] SLOW spr round 1 (radius: 5) [03:54:35 -4688.254594] SLOW spr round 2 (radius: 5) [03:55:29 -4686.553152] SLOW spr round 3 (radius: 5) [03:56:23 -4686.479988] SLOW spr round 4 (radius: 10) [03:57:18 -4680.906717] SLOW spr round 5 (radius: 5) [03:58:15 -4679.406831] SLOW spr round 6 (radius: 5) [03:59:09 -4677.522063] SLOW spr round 7 (radius: 5) [04:00:03 -4677.519765] SLOW spr round 8 (radius: 10) [04:00:58 -4676.193711] SLOW spr round 9 (radius: 5) [04:01:54 -4676.193636] SLOW spr round 10 (radius: 10) [04:02:50 -4675.341013] SLOW spr round 11 (radius: 5) [04:03:47 -4674.907863] SLOW spr round 12 (radius: 5) [04:04:42 -4671.749450] SLOW spr round 13 (radius: 5) [04:05:35 -4671.158666] SLOW spr round 14 (radius: 5) [04:06:30 -4670.683763] SLOW spr round 15 (radius: 5) [04:07:23 -4670.683737] SLOW spr round 16 (radius: 10) [04:08:19 -4670.683737] SLOW spr round 17 (radius: 15) [04:09:22 -4663.701722] SLOW spr round 18 (radius: 5) [04:10:21 -4663.450927] SLOW spr round 19 (radius: 5) [04:11:16 -4663.450893] SLOW spr round 20 (radius: 10) [04:12:12 -4662.846994] SLOW spr round 21 (radius: 5) [04:13:09 -4662.846994] SLOW spr round 22 (radius: 10) [04:14:05 -4662.371958] SLOW spr round 23 (radius: 5) [04:15:02 -4660.823368] SLOW spr round 24 (radius: 5) [04:15:57 -4660.822297] SLOW spr round 25 (radius: 10) [04:16:54 -4660.822109] SLOW spr round 26 (radius: 15) [04:17:57 -4656.988768] SLOW spr round 27 (radius: 5) [04:18:58 -4656.988373] SLOW spr round 28 (radius: 10) [04:19:55 -4656.988310] SLOW spr round 29 (radius: 15) [04:20:57 -4656.988299] SLOW spr round 30 (radius: 20) [04:22:09 -4654.469527] SLOW spr round 31 (radius: 5) [04:23:10 -4636.904197] SLOW spr round 32 (radius: 5) [04:24:06 -4636.904194] SLOW spr round 33 (radius: 10) [04:25:01 -4636.904194] SLOW spr round 34 (radius: 15) [04:26:03 -4636.386530] SLOW spr round 35 (radius: 5) [04:27:02 -4636.386529] SLOW spr round 36 (radius: 10) [04:27:59 -4636.386529] SLOW spr round 37 (radius: 15) [04:29:01 -4636.386529] SLOW spr round 38 (radius: 20) [04:30:14 -4636.386529] SLOW spr round 39 (radius: 25) [04:31:32 -4635.856539] SLOW spr round 40 (radius: 5) [04:32:34 -4635.856443] SLOW spr round 41 (radius: 10) [04:33:31 -4635.856443] SLOW spr round 42 (radius: 15) [04:34:34 -4635.856443] SLOW spr round 43 (radius: 20) [04:35:47 -4635.856443] SLOW spr round 44 (radius: 25) [04:37:07 -4635.856443] Model parameter optimization (eps = 0.100000) [04:37:11] ML tree search #5, logLikelihood: -4635.641110 [04:37:11 -31890.256037] Initial branch length optimization [04:37:11 -25416.523083] Model parameter optimization (eps = 10.000000) [04:37:23 -25077.998069] AUTODETECT spr round 1 (radius: 5) [04:38:13 -16199.669774] AUTODETECT spr round 2 (radius: 10) [04:39:10 -10680.688714] AUTODETECT spr round 3 (radius: 15) [04:40:10 -7569.729128] AUTODETECT spr round 4 (radius: 20) [04:41:16 -6512.746699] AUTODETECT spr round 5 (radius: 25) [04:42:28 -5700.378107] SPR radius for FAST iterations: 25 (autodetect) [04:42:28 -5700.378107] Model parameter optimization (eps = 3.000000) [04:42:37 -5687.989182] FAST spr round 1 (radius: 25) [04:43:35 -4697.928586] FAST spr round 2 (radius: 25) [04:44:30 -4526.075891] FAST spr round 3 (radius: 25) [04:45:23 -4508.280303] FAST spr round 4 (radius: 25) [04:46:15 -4498.264667] FAST spr round 5 (radius: 25) [04:47:06 -4498.264642] Model parameter optimization (eps = 1.000000) [04:47:11 -4497.749434] SLOW spr round 1 (radius: 5) [04:48:03 -4497.098587] SLOW spr round 2 (radius: 5) [04:48:56 -4497.098563] SLOW spr round 3 (radius: 10) [04:49:51 -4495.980641] SLOW spr round 4 (radius: 5) [04:50:47 -4490.528975] SLOW spr round 5 (radius: 5) [04:51:40 -4490.528946] SLOW spr round 6 (radius: 10) [04:52:35 -4490.528945] SLOW spr round 7 (radius: 15) [04:53:37 -4472.900098] SLOW spr round 8 (radius: 5) [04:54:36 -4469.399240] SLOW spr round 9 (radius: 5) [04:55:31 -4469.395162] SLOW spr round 10 (radius: 10) [04:56:27 -4469.395155] SLOW spr round 11 (radius: 15) [04:57:28 -4465.832575] SLOW spr round 12 (radius: 5) [04:58:29 -4465.156943] SLOW spr round 13 (radius: 5) [04:59:24 -4465.155968] SLOW spr round 14 (radius: 10) [05:00:19 -4465.155955] SLOW spr round 15 (radius: 15) [05:01:21 -4465.155955] SLOW spr round 16 (radius: 20) [05:02:37 -4429.019178] SLOW spr round 17 (radius: 5) [05:03:38 -4419.699968] SLOW spr round 18 (radius: 5) [05:04:35 -4410.807714] SLOW spr round 19 (radius: 5) [05:05:30 -4410.807701] SLOW spr round 20 (radius: 10) [05:06:27 -4410.802686] SLOW spr round 21 (radius: 15) [05:07:28 -4406.183358] SLOW spr round 22 (radius: 5) [05:08:29 -4397.190204] SLOW spr round 23 (radius: 5) [05:09:24 -4397.001911] SLOW spr round 24 (radius: 5) [05:10:18 -4397.001911] SLOW spr round 25 (radius: 10) [05:11:14 -4397.001911] SLOW spr round 26 (radius: 15) [05:12:17 -4397.001911] SLOW spr round 27 (radius: 20) [05:13:30 -4397.001911] SLOW spr round 28 (radius: 25) [05:14:56 -4397.001911] Model parameter optimization (eps = 0.100000) [05:15:00] ML tree search #6, logLikelihood: -4396.905303 [05:15:00 -31645.123951] Initial branch length optimization [05:15:01 -25106.126488] Model parameter optimization (eps = 10.000000) [05:15:14 -24802.029039] AUTODETECT spr round 1 (radius: 5) [05:16:05 -16322.349816] AUTODETECT spr round 2 (radius: 10) [05:17:03 -10091.618881] AUTODETECT spr round 3 (radius: 15) [05:18:03 -7572.589791] AUTODETECT spr round 4 (radius: 20) [05:19:12 -6119.931648] AUTODETECT spr round 5 (radius: 25) [05:20:30 -5724.650290] SPR radius for FAST iterations: 25 (autodetect) [05:20:30 -5724.650290] Model parameter optimization (eps = 3.000000) [05:20:40 -5707.800636] FAST spr round 1 (radius: 25) [05:21:36 -4685.850215] FAST spr round 2 (radius: 25) [05:22:32 -4602.831035] FAST spr round 3 (radius: 25) [05:23:27 -4576.855262] FAST spr round 4 (radius: 25) [05:24:23 -4553.082547] FAST spr round 5 (radius: 25) [05:25:16 -4553.082407] Model parameter optimization (eps = 1.000000) [05:25:21 -4552.749638] SLOW spr round 1 (radius: 5) [05:26:15 -4552.178343] SLOW spr round 2 (radius: 5) [05:27:11 -4543.079143] SLOW spr round 3 (radius: 5) [05:28:05 -4543.078742] SLOW spr round 4 (radius: 10) [05:29:04 -4507.642879] SLOW spr round 5 (radius: 5) [05:30:02 -4504.393892] SLOW spr round 6 (radius: 5) [05:30:58 -4497.956025] SLOW spr round 7 (radius: 5) [05:31:52 -4497.955795] SLOW spr round 8 (radius: 10) [05:32:48 -4480.331194] SLOW spr round 9 (radius: 5) [05:33:46 -4469.931119] SLOW spr round 10 (radius: 5) [05:34:42 -4469.925806] SLOW spr round 11 (radius: 10) [05:35:39 -4469.925600] SLOW spr round 12 (radius: 15) [05:36:44 -4444.392713] SLOW spr round 13 (radius: 5) [05:37:45 -4442.361074] SLOW spr round 14 (radius: 5) [05:38:40 -4442.225686] SLOW spr round 15 (radius: 5) [05:39:35 -4442.225469] SLOW spr round 16 (radius: 10) [05:40:31 -4442.225246] SLOW spr round 17 (radius: 15) [05:41:37 -4432.681238] SLOW spr round 18 (radius: 5) [05:42:37 -4423.626572] SLOW spr round 19 (radius: 5) [05:43:31 -4423.626343] SLOW spr round 20 (radius: 10) [05:44:27 -4423.626113] SLOW spr round 21 (radius: 15) [05:45:33 -4423.012155] SLOW spr round 22 (radius: 5) [05:46:33 -4423.012042] SLOW spr round 23 (radius: 10) [05:47:31 -4419.847860] SLOW spr round 24 (radius: 5) [05:48:28 -4419.831357] SLOW spr round 25 (radius: 10) [05:49:25 -4419.830812] SLOW spr round 26 (radius: 15) [05:50:29 -4419.830796] SLOW spr round 27 (radius: 20) [05:51:47 -4418.734312] SLOW spr round 28 (radius: 5) [05:52:49 -4418.730987] SLOW spr round 29 (radius: 10) [05:53:47 -4418.353130] SLOW spr round 30 (radius: 5) [05:54:43 -4418.353128] SLOW spr round 31 (radius: 10) [05:55:40 -4418.353128] SLOW spr round 32 (radius: 15) [05:56:44 -4418.353128] SLOW spr round 33 (radius: 20) [05:58:01 -4418.021119] SLOW spr round 34 (radius: 5) [05:59:02 -4418.021119] SLOW spr round 35 (radius: 10) [06:00:01 -4417.847536] SLOW spr round 36 (radius: 5) [06:00:58 -4417.847536] SLOW spr round 37 (radius: 10) [06:01:55 -4417.847536] SLOW spr round 38 (radius: 15) [06:03:00 -4417.847536] SLOW spr round 39 (radius: 20) [06:04:17 -4417.847536] SLOW spr round 40 (radius: 25) [06:05:45 -4417.847535] Model parameter optimization (eps = 0.100000) [06:05:50] ML tree search #7, logLikelihood: -4417.722055 [06:05:50 -31749.264730] Initial branch length optimization [06:05:51 -25277.917018] Model parameter optimization (eps = 10.000000) [06:06:06 -24949.395136] AUTODETECT spr round 1 (radius: 5) [06:06:56 -16177.423829] AUTODETECT spr round 2 (radius: 10) [06:07:52 -10113.557762] AUTODETECT spr round 3 (radius: 15) [06:08:52 -7597.315288] AUTODETECT spr round 4 (radius: 20) [06:09:56 -6513.590081] AUTODETECT spr round 5 (radius: 25) [06:11:07 -5803.046016] SPR radius for FAST iterations: 25 (autodetect) [06:11:07 -5803.046016] Model parameter optimization (eps = 3.000000) [06:11:19 -5757.609422] FAST spr round 1 (radius: 25) [06:12:17 -4565.657681] FAST spr round 2 (radius: 25) [06:13:13 -4508.451375] FAST spr round 3 (radius: 25) [06:14:07 -4477.500651] FAST spr round 4 (radius: 25) [06:15:00 -4477.498792] Model parameter optimization (eps = 1.000000) [06:15:11 -4468.883941] SLOW spr round 1 (radius: 5) [06:16:05 -4462.847946] SLOW spr round 2 (radius: 5) [06:17:00 -4459.513921] SLOW spr round 3 (radius: 5) [06:17:54 -4459.513066] SLOW spr round 4 (radius: 10) [06:18:50 -4452.546927] SLOW spr round 5 (radius: 5) [06:19:46 -4446.189523] SLOW spr round 6 (radius: 5) [06:20:40 -4446.189498] SLOW spr round 7 (radius: 10) [06:21:36 -4446.189490] SLOW spr round 8 (radius: 15) [06:22:38 -4438.868257] SLOW spr round 9 (radius: 5) [06:23:37 -4438.283771] SLOW spr round 10 (radius: 5) [06:24:31 -4438.283763] SLOW spr round 11 (radius: 10) [06:25:27 -4438.283763] SLOW spr round 12 (radius: 15) [06:26:28 -4426.955767] SLOW spr round 13 (radius: 5) [06:27:28 -4426.955741] SLOW spr round 14 (radius: 10) [06:28:25 -4426.234055] SLOW spr round 15 (radius: 5) [06:29:21 -4426.233999] SLOW spr round 16 (radius: 10) [06:30:17 -4426.233997] SLOW spr round 17 (radius: 15) [06:31:18 -4426.233996] SLOW spr round 18 (radius: 20) [06:32:27 -4415.705103] SLOW spr round 19 (radius: 5) [06:33:28 -4399.630323] SLOW spr round 20 (radius: 5) [06:34:24 -4399.630166] SLOW spr round 21 (radius: 10) [06:35:20 -4399.630165] SLOW spr round 22 (radius: 15) [06:36:20 -4399.630165] SLOW spr round 23 (radius: 20) [06:37:29 -4399.630165] SLOW spr round 24 (radius: 25) [06:38:46 -4394.118593] SLOW spr round 25 (radius: 5) [06:39:46 -4394.118354] SLOW spr round 26 (radius: 10) [06:40:44 -4393.875433] SLOW spr round 27 (radius: 5) [06:41:42 -4393.849126] SLOW spr round 28 (radius: 10) [06:42:39 -4393.848683] SLOW spr round 29 (radius: 15) [06:43:39 -4393.848623] SLOW spr round 30 (radius: 20) [06:44:46 -4393.848611] SLOW spr round 31 (radius: 25) [06:45:59 -4393.848608] Model parameter optimization (eps = 0.100000) [06:46:05] ML tree search #8, logLikelihood: -4393.666741 [06:46:05 -31521.985508] Initial branch length optimization [06:46:05 -25115.871755] Model parameter optimization (eps = 10.000000) [06:46:19 -24814.604623] AUTODETECT spr round 1 (radius: 5) [06:47:09 -16312.231982] AUTODETECT spr round 2 (radius: 10) [06:48:05 -10166.937594] AUTODETECT spr round 3 (radius: 15) [06:49:04 -7306.918835] AUTODETECT spr round 4 (radius: 20) [06:50:10 -6297.600370] AUTODETECT spr round 5 (radius: 25) [06:51:20 -5655.488911] SPR radius for FAST iterations: 25 (autodetect) [06:51:20 -5655.488911] Model parameter optimization (eps = 3.000000) [06:51:29 -5648.510196] FAST spr round 1 (radius: 25) [06:52:25 -4709.896494] FAST spr round 2 (radius: 25) [06:53:19 -4639.483030] FAST spr round 3 (radius: 25) [06:54:12 -4637.760793] FAST spr round 4 (radius: 25) [06:55:04 -4637.760755] Model parameter optimization (eps = 1.000000) [06:55:12 -4635.556701] SLOW spr round 1 (radius: 5) [06:56:06 -4635.265664] SLOW spr round 2 (radius: 5) [06:56:59 -4630.159384] SLOW spr round 3 (radius: 5) [06:57:52 -4630.159384] SLOW spr round 4 (radius: 10) [06:58:48 -4624.459896] SLOW spr round 5 (radius: 5) [06:59:46 -4618.616568] SLOW spr round 6 (radius: 5) [07:00:41 -4617.156057] SLOW spr round 7 (radius: 5) [07:01:35 -4617.156057] SLOW spr round 8 (radius: 10) [07:02:29 -4615.136605] SLOW spr round 9 (radius: 5) [07:03:26 -4615.044119] SLOW spr round 10 (radius: 10) [07:04:21 -4611.919598] SLOW spr round 11 (radius: 5) [07:05:18 -4610.748826] SLOW spr round 12 (radius: 5) [07:06:11 -4610.748826] SLOW spr round 13 (radius: 10) [07:07:06 -4610.748826] SLOW spr round 14 (radius: 15) [07:08:07 -4576.939999] SLOW spr round 15 (radius: 5) [07:09:06 -4568.677613] SLOW spr round 16 (radius: 5) [07:10:01 -4568.677557] SLOW spr round 17 (radius: 10) [07:10:56 -4568.677556] SLOW spr round 18 (radius: 15) [07:11:57 -4568.677555] SLOW spr round 19 (radius: 20) [07:13:07 -4567.741344] SLOW spr round 20 (radius: 5) [07:14:07 -4566.938063] SLOW spr round 21 (radius: 5) [07:15:02 -4566.938063] SLOW spr round 22 (radius: 10) [07:15:56 -4566.938063] SLOW spr round 23 (radius: 15) [07:16:58 -4566.938058] SLOW spr round 24 (radius: 20) [07:18:10 -4566.938058] SLOW spr round 25 (radius: 25) [07:19:39 -4506.002034] SLOW spr round 26 (radius: 5) [07:20:39 -4493.549621] SLOW spr round 27 (radius: 5) [07:21:36 -4481.982206] SLOW spr round 28 (radius: 5) [07:22:30 -4447.553199] SLOW spr round 29 (radius: 5) [07:23:25 -4446.716441] SLOW spr round 30 (radius: 5) [07:24:18 -4446.716370] SLOW spr round 31 (radius: 10) [07:25:13 -4445.075728] SLOW spr round 32 (radius: 5) [07:26:09 -4445.075482] SLOW spr round 33 (radius: 10) [07:27:04 -4442.591759] SLOW spr round 34 (radius: 5) [07:28:01 -4442.591754] SLOW spr round 35 (radius: 10) [07:28:55 -4442.591754] SLOW spr round 36 (radius: 15) [07:29:57 -4431.386988] SLOW spr round 37 (radius: 5) [07:30:56 -4430.916229] SLOW spr round 38 (radius: 5) [07:31:50 -4430.916211] SLOW spr round 39 (radius: 10) [07:32:46 -4430.656696] SLOW spr round 40 (radius: 5) [07:33:42 -4429.977377] SLOW spr round 41 (radius: 5) [07:34:37 -4429.977376] SLOW spr round 42 (radius: 10) [07:35:31 -4429.977376] SLOW spr round 43 (radius: 15) [07:36:32 -4429.977376] SLOW spr round 44 (radius: 20) [07:37:43 -4429.977376] SLOW spr round 45 (radius: 25) [07:39:08 -4428.040562] SLOW spr round 46 (radius: 5) [07:40:08 -4427.890439] SLOW spr round 47 (radius: 5) [07:41:03 -4427.890439] SLOW spr round 48 (radius: 10) [07:41:59 -4427.890439] SLOW spr round 49 (radius: 15) [07:43:00 -4427.890439] SLOW spr round 50 (radius: 20) [07:44:11 -4427.890439] SLOW spr round 51 (radius: 25) [07:45:38 -4427.890439] Model parameter optimization (eps = 0.100000) [07:45:42] ML tree search #9, logLikelihood: -4427.725742 [07:45:42 -31393.765642] Initial branch length optimization [07:45:42 -25121.245822] Model parameter optimization (eps = 10.000000) [07:45:54 -24799.056882] AUTODETECT spr round 1 (radius: 5) [07:46:43 -16362.964898] AUTODETECT spr round 2 (radius: 10) [07:47:37 -11574.939320] AUTODETECT spr round 3 (radius: 15) [07:48:39 -8103.642272] AUTODETECT spr round 4 (radius: 20) [07:49:44 -6796.070275] AUTODETECT spr round 5 (radius: 25) [07:50:59 -6242.927620] SPR radius for FAST iterations: 25 (autodetect) [07:50:59 -6242.927620] Model parameter optimization (eps = 3.000000) [07:51:08 -6236.730541] FAST spr round 1 (radius: 25) [07:52:07 -4992.780455] FAST spr round 2 (radius: 25) [07:53:02 -4909.915289] FAST spr round 3 (radius: 25) [07:53:57 -4899.602758] FAST spr round 4 (radius: 25) [07:54:51 -4899.519130] Model parameter optimization (eps = 1.000000) [07:54:56 -4899.273532] SLOW spr round 1 (radius: 5) [07:55:51 -4894.356806] SLOW spr round 2 (radius: 5) [07:56:47 -4894.355422] SLOW spr round 3 (radius: 10) [07:57:45 -4879.071941] SLOW spr round 4 (radius: 5) [07:58:42 -4866.047857] SLOW spr round 5 (radius: 5) [07:59:37 -4866.045741] SLOW spr round 6 (radius: 10) [08:00:32 -4864.844651] SLOW spr round 7 (radius: 5) [08:01:29 -4864.844647] SLOW spr round 8 (radius: 10) [08:02:26 -4864.844646] SLOW spr round 9 (radius: 15) [08:03:29 -4856.465840] SLOW spr round 10 (radius: 5) [08:04:30 -4845.872364] SLOW spr round 11 (radius: 5) [08:05:26 -4845.870639] SLOW spr round 12 (radius: 10) [08:06:22 -4845.870638] SLOW spr round 13 (radius: 15) [08:07:26 -4844.475780] SLOW spr round 14 (radius: 5) [08:08:26 -4841.082747] SLOW spr round 15 (radius: 5) [08:09:22 -4841.082747] SLOW spr round 16 (radius: 10) [08:10:19 -4841.082740] SLOW spr round 17 (radius: 15) [08:11:23 -4840.506150] SLOW spr round 18 (radius: 5) [08:12:23 -4840.506136] SLOW spr round 19 (radius: 10) [08:13:21 -4840.506136] SLOW spr round 20 (radius: 15) [08:14:24 -4840.506136] SLOW spr round 21 (radius: 20) [08:15:36 -4838.866584] SLOW spr round 22 (radius: 5) [08:16:38 -4810.808257] SLOW spr round 23 (radius: 5) [08:17:33 -4810.808246] SLOW spr round 24 (radius: 10) [08:18:30 -4810.808246] SLOW spr round 25 (radius: 15) [08:19:34 -4808.240782] SLOW spr round 26 (radius: 5) [08:20:34 -4808.240742] SLOW spr round 27 (radius: 10) [08:21:32 -4808.240741] SLOW spr round 28 (radius: 15) [08:22:35 -4808.240741] SLOW spr round 29 (radius: 20) [08:23:51 -4772.204561] SLOW spr round 30 (radius: 5) [08:24:53 -4745.420930] SLOW spr round 31 (radius: 5) [08:25:50 -4725.629429] SLOW spr round 32 (radius: 5) [08:26:45 -4725.629374] SLOW spr round 33 (radius: 10) [08:27:43 -4717.306998] SLOW spr round 34 (radius: 5) [08:28:41 -4715.272525] SLOW spr round 35 (radius: 5) [08:29:36 -4715.272512] SLOW spr round 36 (radius: 10) [08:30:33 -4715.272512] SLOW spr round 37 (radius: 15) [08:31:37 -4696.353106] SLOW spr round 38 (radius: 5) [08:32:38 -4685.227987] SLOW spr round 39 (radius: 5) [08:33:34 -4685.227848] SLOW spr round 40 (radius: 10) [08:34:31 -4685.227847] SLOW spr round 41 (radius: 15) [08:35:35 -4685.227847] SLOW spr round 42 (radius: 20) [08:36:49 -4684.752445] SLOW spr round 43 (radius: 5) [08:37:50 -4684.752438] SLOW spr round 44 (radius: 10) [08:38:48 -4684.248621] SLOW spr round 45 (radius: 5) [08:39:45 -4684.248621] SLOW spr round 46 (radius: 10) [08:40:42 -4684.248621] SLOW spr round 47 (radius: 15) [08:41:46 -4684.248621] SLOW spr round 48 (radius: 20) [08:42:59 -4684.248621] SLOW spr round 49 (radius: 25) [08:44:20 -4669.757972] SLOW spr round 50 (radius: 5) [08:45:21 -4667.520927] SLOW spr round 51 (radius: 5) [08:46:18 -4667.520846] SLOW spr round 52 (radius: 10) [08:47:15 -4667.520845] SLOW spr round 53 (radius: 15) [08:48:18 -4667.520845] SLOW spr round 54 (radius: 20) [08:49:31 -4667.520845] SLOW spr round 55 (radius: 25) [08:50:52 -4666.527986] SLOW spr round 56 (radius: 5) [08:51:54 -4666.526559] SLOW spr round 57 (radius: 10) [08:52:52 -4665.678967] SLOW spr round 58 (radius: 5) [08:53:49 -4665.678945] SLOW spr round 59 (radius: 10) [08:54:47 -4665.678945] SLOW spr round 60 (radius: 15) [08:55:50 -4665.678945] SLOW spr round 61 (radius: 20) [08:57:03 -4665.678945] SLOW spr round 62 (radius: 25) [08:58:24 -4665.678945] Model parameter optimization (eps = 0.100000) [08:58:27] ML tree search #10, logLikelihood: -4665.652897 [08:58:27 -31859.387540] Initial branch length optimization [08:58:28 -25325.403987] Model parameter optimization (eps = 10.000000) [08:58:45 -24967.729396] AUTODETECT spr round 1 (radius: 5) [08:59:37 -16141.306079] AUTODETECT spr round 2 (radius: 10) [09:00:34 -10540.366450] AUTODETECT spr round 3 (radius: 15) [09:01:35 -7970.891925] AUTODETECT spr round 4 (radius: 20) [09:02:42 -6947.711432] AUTODETECT spr round 5 (radius: 25) [09:03:52 -6572.860744] SPR radius for FAST iterations: 25 (autodetect) [09:03:52 -6572.860744] Model parameter optimization (eps = 3.000000) [09:04:11 -6542.009346] FAST spr round 1 (radius: 25) [09:05:07 -5074.405408] FAST spr round 2 (radius: 25) [09:06:02 -4807.213570] FAST spr round 3 (radius: 25) [09:06:55 -4726.311185] FAST spr round 4 (radius: 25) [09:07:48 -4684.637770] FAST spr round 5 (radius: 25) [09:08:41 -4678.708710] FAST spr round 6 (radius: 25) [09:09:34 -4675.344060] FAST spr round 7 (radius: 25) [09:10:27 -4675.343978] Model parameter optimization (eps = 1.000000) [09:10:33 -4669.482055] SLOW spr round 1 (radius: 5) [09:11:28 -4666.765197] SLOW spr round 2 (radius: 5) [09:12:22 -4666.764881] SLOW spr round 3 (radius: 10) [09:13:19 -4634.630993] SLOW spr round 4 (radius: 5) [09:14:16 -4628.550845] SLOW spr round 5 (radius: 5) [09:15:11 -4628.550484] SLOW spr round 6 (radius: 10) [09:16:07 -4627.939498] SLOW spr round 7 (radius: 5) [09:17:04 -4627.939498] SLOW spr round 8 (radius: 10) [09:17:59 -4627.939498] SLOW spr round 9 (radius: 15) [09:19:04 -4558.787326] SLOW spr round 10 (radius: 5) [09:20:05 -4503.767404] SLOW spr round 11 (radius: 5) [09:21:00 -4501.825574] SLOW spr round 12 (radius: 5) [09:21:54 -4501.825574] SLOW spr round 13 (radius: 10) [09:22:50 -4501.825574] SLOW spr round 14 (radius: 15) [09:23:53 -4501.825574] SLOW spr round 15 (radius: 20) [09:25:14 -4485.281443] SLOW spr round 16 (radius: 5) [09:26:17 -4474.118565] SLOW spr round 17 (radius: 5) [09:27:13 -4458.272336] SLOW spr round 18 (radius: 5) [09:28:09 -4446.479550] SLOW spr round 19 (radius: 5) [09:29:04 -4446.476851] SLOW spr round 20 (radius: 10) [09:30:00 -4444.458085] SLOW spr round 21 (radius: 5) [09:30:57 -4442.530632] SLOW spr round 22 (radius: 5) [09:31:52 -4442.530621] SLOW spr round 23 (radius: 10) [09:32:47 -4442.530621] SLOW spr round 24 (radius: 15) [09:33:49 -4442.530621] SLOW spr round 25 (radius: 20) [09:35:08 -4439.875534] SLOW spr round 26 (radius: 5) [09:36:10 -4439.874233] SLOW spr round 27 (radius: 10) [09:37:06 -4438.622804] SLOW spr round 28 (radius: 5) [09:38:01 -4438.349186] SLOW spr round 29 (radius: 5) [09:38:55 -4438.349130] SLOW spr round 30 (radius: 10) [09:39:51 -4438.349129] SLOW spr round 31 (radius: 15) [09:40:53 -4438.349129] SLOW spr round 32 (radius: 20) [09:42:14 -4437.771466] SLOW spr round 33 (radius: 5) [09:43:16 -4435.116725] SLOW spr round 34 (radius: 5) [09:44:11 -4435.116717] SLOW spr round 35 (radius: 10) [09:45:07 -4435.057229] SLOW spr round 36 (radius: 15) [09:46:10 -4435.057229] SLOW spr round 37 (radius: 20) [09:47:31 -4435.057229] SLOW spr round 38 (radius: 25) [09:49:12 -4434.285644] SLOW spr round 39 (radius: 5) [09:50:14 -4434.285644] SLOW spr round 40 (radius: 10) [09:51:11 -4434.285644] SLOW spr round 41 (radius: 15) [09:52:13 -4433.445174] SLOW spr round 42 (radius: 5) [09:53:13 -4428.248347] SLOW spr round 43 (radius: 5) [09:54:09 -4428.248343] SLOW spr round 44 (radius: 10) [09:55:05 -4428.248343] SLOW spr round 45 (radius: 15) [09:56:07 -4428.248343] SLOW spr round 46 (radius: 20) [09:57:27 -4428.248343] SLOW spr round 47 (radius: 25) [09:59:08 -4428.248343] Model parameter optimization (eps = 0.100000) [09:59:13] ML tree search #11, logLikelihood: -4428.051100 [09:59:13 -31915.441837] Initial branch length optimization [09:59:13 -25340.219485] Model parameter optimization (eps = 10.000000) [09:59:26 -25017.637887] AUTODETECT spr round 1 (radius: 5) [10:00:15 -16176.754969] AUTODETECT spr round 2 (radius: 10) [10:01:13 -9959.623360] AUTODETECT spr round 3 (radius: 15) [10:02:16 -7505.403462] AUTODETECT spr round 4 (radius: 20) [10:03:22 -6428.470339] AUTODETECT spr round 5 (radius: 25) [10:04:35 -5987.772220] SPR radius for FAST iterations: 25 (autodetect) [10:04:35 -5987.772220] Model parameter optimization (eps = 3.000000) [10:04:53 -5963.422927] FAST spr round 1 (radius: 25) [10:05:49 -4741.456229] FAST spr round 2 (radius: 25) [10:06:45 -4612.499039] FAST spr round 3 (radius: 25) [10:07:41 -4550.687166] FAST spr round 4 (radius: 25) [10:08:35 -4545.942778] FAST spr round 5 (radius: 25) [10:09:29 -4544.615270] FAST spr round 6 (radius: 25) [10:10:23 -4544.615010] Model parameter optimization (eps = 1.000000) [10:10:32 -4540.599369] SLOW spr round 1 (radius: 5) [10:11:26 -4531.146252] SLOW spr round 2 (radius: 5) [10:12:20 -4531.146242] SLOW spr round 3 (radius: 10) [10:13:16 -4527.731519] SLOW spr round 4 (radius: 5) [10:14:13 -4527.731469] SLOW spr round 5 (radius: 10) [10:15:10 -4527.731469] SLOW spr round 6 (radius: 15) [10:16:12 -4516.416540] SLOW spr round 7 (radius: 5) [10:17:12 -4512.963557] SLOW spr round 8 (radius: 5) [10:18:07 -4512.963463] SLOW spr round 9 (radius: 10) [10:19:04 -4512.963455] SLOW spr round 10 (radius: 15) [10:20:06 -4509.814483] SLOW spr round 11 (radius: 5) [10:21:05 -4509.814389] SLOW spr round 12 (radius: 10) [10:22:03 -4508.604617] SLOW spr round 13 (radius: 5) [10:22:58 -4508.604614] SLOW spr round 14 (radius: 10) [10:23:55 -4508.604614] SLOW spr round 15 (radius: 15) [10:24:54 -4508.604614] SLOW spr round 16 (radius: 20) [10:26:05 -4507.256305] SLOW spr round 17 (radius: 5) [10:27:04 -4507.256305] SLOW spr round 18 (radius: 10) [10:28:02 -4507.256305] SLOW spr round 19 (radius: 15) [10:29:02 -4497.583981] SLOW spr round 20 (radius: 5) [10:30:02 -4497.583976] SLOW spr round 21 (radius: 10) [10:30:58 -4497.583976] SLOW spr round 22 (radius: 15) [10:31:58 -4497.583976] SLOW spr round 23 (radius: 20) [10:33:10 -4491.989113] SLOW spr round 24 (radius: 5) [10:34:12 -4481.921963] SLOW spr round 25 (radius: 5) [10:35:09 -4480.418635] SLOW spr round 26 (radius: 5) [10:36:05 -4480.071387] SLOW spr round 27 (radius: 5) [10:37:00 -4478.801241] SLOW spr round 28 (radius: 5) [10:37:54 -4478.801238] SLOW spr round 29 (radius: 10) [10:38:49 -4467.164891] SLOW spr round 30 (radius: 5) [10:39:46 -4467.164877] SLOW spr round 31 (radius: 10) [10:40:42 -4467.164877] SLOW spr round 32 (radius: 15) [10:41:43 -4467.164877] SLOW spr round 33 (radius: 20) [10:42:54 -4463.784403] SLOW spr round 34 (radius: 5) [10:43:55 -4463.784226] SLOW spr round 35 (radius: 10) [10:44:53 -4463.500687] SLOW spr round 36 (radius: 5) [10:45:50 -4463.500525] SLOW spr round 37 (radius: 10) [10:46:47 -4463.500512] SLOW spr round 38 (radius: 15) [10:47:48 -4463.123616] SLOW spr round 39 (radius: 5) [10:48:49 -4443.656399] SLOW spr round 40 (radius: 5) [10:49:45 -4443.635721] SLOW spr round 41 (radius: 10) [10:50:41 -4443.635691] SLOW spr round 42 (radius: 15) [10:51:43 -4443.204342] SLOW spr round 43 (radius: 5) [10:52:43 -4443.204342] SLOW spr round 44 (radius: 10) [10:53:39 -4443.204342] SLOW spr round 45 (radius: 15) [10:54:40 -4443.204342] SLOW spr round 46 (radius: 20) [10:55:54 -4443.204342] SLOW spr round 47 (radius: 25) [10:57:17 -4442.221857] SLOW spr round 48 (radius: 5) [10:58:17 -4442.221761] SLOW spr round 49 (radius: 10) [10:59:14 -4442.221759] SLOW spr round 50 (radius: 15) [11:00:15 -4442.221759] SLOW spr round 51 (radius: 20) [11:01:28 -4442.221759] SLOW spr round 52 (radius: 25) [11:02:49 -4442.221759] Model parameter optimization (eps = 0.100000) [11:02:59] ML tree search #12, logLikelihood: -4440.640082 [11:02:59 -31693.513048] Initial branch length optimization [11:02:59 -25225.025163] Model parameter optimization (eps = 10.000000) [11:03:15 -24909.562050] AUTODETECT spr round 1 (radius: 5) [11:04:06 -16597.977668] AUTODETECT spr round 2 (radius: 10) [11:05:02 -10667.151314] AUTODETECT spr round 3 (radius: 15) [11:06:06 -7295.459021] AUTODETECT spr round 4 (radius: 20) [11:07:10 -6502.040125] AUTODETECT spr round 5 (radius: 25) [11:08:20 -6225.619522] SPR radius for FAST iterations: 25 (autodetect) [11:08:20 -6225.619522] Model parameter optimization (eps = 3.000000) [11:08:28 -6208.639697] FAST spr round 1 (radius: 25) [11:09:26 -5167.228102] FAST spr round 2 (radius: 25) [11:10:21 -5057.818390] FAST spr round 3 (radius: 25) [11:11:17 -5038.800738] FAST spr round 4 (radius: 25) [11:12:10 -5033.370674] FAST spr round 5 (radius: 25) [11:13:04 -5033.370674] Model parameter optimization (eps = 1.000000) [11:13:14 -5032.247264] SLOW spr round 1 (radius: 5) [11:14:09 -5030.287687] SLOW spr round 2 (radius: 5) [11:15:05 -5030.287444] SLOW spr round 3 (radius: 10) [11:16:01 -5023.862378] SLOW spr round 4 (radius: 5) [11:16:59 -5023.383294] SLOW spr round 5 (radius: 5) [11:17:54 -5023.383290] SLOW spr round 6 (radius: 10) [11:18:50 -5023.383290] SLOW spr round 7 (radius: 15) [11:19:53 -5013.799889] SLOW spr round 8 (radius: 5) [11:20:55 -5008.362946] SLOW spr round 9 (radius: 5) [11:21:51 -5008.345948] SLOW spr round 10 (radius: 10) [11:22:46 -5007.360615] SLOW spr round 11 (radius: 5) [11:23:45 -5007.360606] SLOW spr round 12 (radius: 10) [11:24:41 -5005.806219] SLOW spr round 13 (radius: 5) [11:25:40 -5005.455095] SLOW spr round 14 (radius: 5) [11:26:34 -5005.455089] SLOW spr round 15 (radius: 10) [11:27:30 -5005.455089] SLOW spr round 16 (radius: 15) [11:28:31 -5005.455089] SLOW spr round 17 (radius: 20) [11:29:45 -4969.505497] SLOW spr round 18 (radius: 5) [11:30:47 -4910.670112] SLOW spr round 19 (radius: 5) [11:31:44 -4882.638200] SLOW spr round 20 (radius: 5) [11:32:38 -4881.427516] SLOW spr round 21 (radius: 5) [11:33:33 -4881.427516] SLOW spr round 22 (radius: 10) [11:34:28 -4877.950863] SLOW spr round 23 (radius: 5) [11:35:26 -4877.828650] SLOW spr round 24 (radius: 5) [11:36:20 -4877.828643] SLOW spr round 25 (radius: 10) [11:37:16 -4877.828642] SLOW spr round 26 (radius: 15) [11:38:19 -4866.121736] SLOW spr round 27 (radius: 5) [11:39:20 -4866.121736] SLOW spr round 28 (radius: 10) [11:40:17 -4860.558431] SLOW spr round 29 (radius: 5) [11:41:14 -4860.558407] SLOW spr round 30 (radius: 10) [11:42:10 -4860.558406] SLOW spr round 31 (radius: 15) [11:43:13 -4860.558406] SLOW spr round 32 (radius: 20) [11:44:28 -4860.558406] SLOW spr round 33 (radius: 25) [11:45:57 -4834.303533] SLOW spr round 34 (radius: 5) [11:46:58 -4834.300896] SLOW spr round 35 (radius: 10) [11:47:56 -4834.300794] SLOW spr round 36 (radius: 15) [11:48:58 -4834.300794] SLOW spr round 37 (radius: 20) [11:50:12 -4834.300794] SLOW spr round 38 (radius: 25) [11:51:39 -4834.300794] Model parameter optimization (eps = 0.100000) [11:51:45] ML tree search #13, logLikelihood: -4834.113033 [11:51:45 -31540.963632] Initial branch length optimization [11:51:46 -25292.433086] Model parameter optimization (eps = 10.000000) [11:51:58 -24964.754454] AUTODETECT spr round 1 (radius: 5) [11:52:49 -16160.662874] AUTODETECT spr round 2 (radius: 10) [11:53:45 -10757.243505] AUTODETECT spr round 3 (radius: 15) [11:54:46 -7475.979835] AUTODETECT spr round 4 (radius: 20) [11:55:52 -6075.019450] AUTODETECT spr round 5 (radius: 25) [11:57:01 -5877.349481] SPR radius for FAST iterations: 25 (autodetect) [11:57:01 -5877.349481] Model parameter optimization (eps = 3.000000) [11:57:15 -5855.061435] FAST spr round 1 (radius: 25) [11:58:13 -4890.006066] FAST spr round 2 (radius: 25) [11:59:09 -4771.642407] FAST spr round 3 (radius: 25) [12:00:04 -4757.112995] FAST spr round 4 (radius: 25) [12:00:58 -4733.937455] FAST spr round 5 (radius: 25) [12:01:52 -4732.839929] FAST spr round 6 (radius: 25) [12:02:45 -4732.839913] Model parameter optimization (eps = 1.000000) [12:02:53 -4731.566281] SLOW spr round 1 (radius: 5) [12:03:47 -4730.193373] SLOW spr round 2 (radius: 5) [12:04:43 -4730.193102] SLOW spr round 3 (radius: 10) [12:05:40 -4677.474704] SLOW spr round 4 (radius: 5) [12:06:38 -4665.205268] SLOW spr round 5 (radius: 5) [12:07:34 -4663.345985] SLOW spr round 6 (radius: 5) [12:08:28 -4663.345849] SLOW spr round 7 (radius: 10) [12:09:22 -4662.842482] SLOW spr round 8 (radius: 5) [12:10:18 -4662.842477] SLOW spr round 9 (radius: 10) [12:11:13 -4662.379814] SLOW spr round 10 (radius: 5) [12:12:11 -4662.379813] SLOW spr round 11 (radius: 10) [12:13:07 -4662.379803] SLOW spr round 12 (radius: 15) [12:14:10 -4587.318914] SLOW spr round 13 (radius: 5) [12:15:11 -4580.262396] SLOW spr round 14 (radius: 5) [12:16:06 -4580.261903] SLOW spr round 15 (radius: 10) [12:17:02 -4580.261889] SLOW spr round 16 (radius: 15) [12:18:04 -4579.349626] SLOW spr round 17 (radius: 5) [12:19:04 -4579.348874] SLOW spr round 18 (radius: 10) [12:20:01 -4578.083254] SLOW spr round 19 (radius: 5) [12:20:58 -4578.083252] SLOW spr round 20 (radius: 10) [12:21:55 -4578.083252] SLOW spr round 21 (radius: 15) [12:22:58 -4578.083251] SLOW spr round 22 (radius: 20) [12:24:11 -4576.060764] SLOW spr round 23 (radius: 5) [12:25:12 -4576.060691] SLOW spr round 24 (radius: 10) [12:26:10 -4576.036983] SLOW spr round 25 (radius: 15) [12:27:12 -4575.256983] SLOW spr round 26 (radius: 5) [12:28:12 -4575.256971] SLOW spr round 27 (radius: 10) [12:29:09 -4575.256971] SLOW spr round 28 (radius: 15) [12:30:10 -4575.012250] SLOW spr round 29 (radius: 5) [12:31:11 -4574.722885] SLOW spr round 30 (radius: 5) [12:32:07 -4574.722878] SLOW spr round 31 (radius: 10) [12:33:03 -4574.722878] SLOW spr round 32 (radius: 15) [12:34:04 -4574.722878] SLOW spr round 33 (radius: 20) [12:35:16 -4574.722878] SLOW spr round 34 (radius: 25) [12:36:38 -4558.873560] SLOW spr round 35 (radius: 5) [12:37:40 -4544.869506] SLOW spr round 36 (radius: 5) [12:38:35 -4544.869506] SLOW spr round 37 (radius: 10) [12:39:31 -4544.869506] SLOW spr round 38 (radius: 15) [12:40:33 -4544.869506] SLOW spr round 39 (radius: 20) [12:41:45 -4544.869506] SLOW spr round 40 (radius: 25) [12:43:06 -4544.869506] Model parameter optimization (eps = 0.100000) [12:43:15] ML tree search #14, logLikelihood: -4543.543924 [12:43:15 -31783.094340] Initial branch length optimization [12:43:16 -25406.531852] Model parameter optimization (eps = 10.000000) [12:43:29 -25070.299399] AUTODETECT spr round 1 (radius: 5) [12:44:20 -16137.582351] AUTODETECT spr round 2 (radius: 10) [12:45:18 -9902.428239] AUTODETECT spr round 3 (radius: 15) [12:46:17 -7562.909846] AUTODETECT spr round 4 (radius: 20) [12:47:21 -6622.524119] AUTODETECT spr round 5 (radius: 25) [12:48:24 -6294.661755] SPR radius for FAST iterations: 25 (autodetect) [12:48:24 -6294.661755] Model parameter optimization (eps = 3.000000) [12:48:35 -6282.395510] FAST spr round 1 (radius: 25) [12:49:33 -5109.447181] FAST spr round 2 (radius: 25) [12:50:28 -4925.987019] FAST spr round 3 (radius: 25) [12:51:23 -4722.853944] FAST spr round 4 (radius: 25) [12:52:18 -4693.309296] FAST spr round 5 (radius: 25) [12:53:12 -4693.308219] Model parameter optimization (eps = 1.000000) [12:53:21 -4692.437215] SLOW spr round 1 (radius: 5) [12:54:16 -4692.419903] SLOW spr round 2 (radius: 10) [12:55:14 -4678.402965] SLOW spr round 3 (radius: 5) [12:56:12 -4677.797495] SLOW spr round 4 (radius: 5) [12:57:07 -4676.564141] SLOW spr round 5 (radius: 5) [12:58:01 -4676.144507] SLOW spr round 6 (radius: 5) [12:58:56 -4676.144264] SLOW spr round 7 (radius: 10) [12:59:53 -4676.144123] SLOW spr round 8 (radius: 15) [13:00:56 -4659.349629] SLOW spr round 9 (radius: 5) [13:01:57 -4628.740130] SLOW spr round 10 (radius: 5) [13:02:52 -4623.202061] SLOW spr round 11 (radius: 5) [13:03:47 -4623.199171] SLOW spr round 12 (radius: 10) [13:04:44 -4623.199103] SLOW spr round 13 (radius: 15) [13:05:47 -4622.436576] SLOW spr round 14 (radius: 5) [13:06:48 -4622.436549] SLOW spr round 15 (radius: 10) [13:07:46 -4622.436524] SLOW spr round 16 (radius: 15) [13:08:49 -4618.221728] SLOW spr round 17 (radius: 5) [13:09:50 -4618.221695] SLOW spr round 18 (radius: 10) [13:10:47 -4618.221691] SLOW spr round 19 (radius: 15) [13:11:50 -4618.221688] SLOW spr round 20 (radius: 20) [13:13:06 -4597.313220] SLOW spr round 21 (radius: 5) [13:14:07 -4594.154351] SLOW spr round 22 (radius: 5) [13:15:03 -4593.996878] SLOW spr round 23 (radius: 5) [13:15:57 -4593.995892] SLOW spr round 24 (radius: 10) [13:16:53 -4593.995855] SLOW spr round 25 (radius: 15) [13:17:54 -4593.360412] SLOW spr round 26 (radius: 5) [13:18:55 -4593.360105] SLOW spr round 27 (radius: 10) [13:19:52 -4593.360093] SLOW spr round 28 (radius: 15) [13:20:54 -4593.360092] SLOW spr round 29 (radius: 20) [13:22:07 -4588.607528] SLOW spr round 30 (radius: 5) [13:23:08 -4588.607526] SLOW spr round 31 (radius: 10) [13:24:07 -4588.607526] SLOW spr round 32 (radius: 15) [13:25:08 -4588.607526] SLOW spr round 33 (radius: 20) [13:26:20 -4588.607526] SLOW spr round 34 (radius: 25) [13:27:46 -4530.460769] SLOW spr round 35 (radius: 5) [13:28:49 -4420.817019] SLOW spr round 36 (radius: 5) [13:29:46 -4402.264226] SLOW spr round 37 (radius: 5) [13:30:40 -4402.264221] SLOW spr round 38 (radius: 10) [13:31:36 -4402.264221] SLOW spr round 39 (radius: 15) [13:32:38 -4375.316210] SLOW spr round 40 (radius: 5) [13:33:38 -4375.043207] SLOW spr round 41 (radius: 5) [13:34:33 -4375.043047] SLOW spr round 42 (radius: 10) [13:35:29 -4373.379677] SLOW spr round 43 (radius: 5) [13:36:25 -4373.379675] SLOW spr round 44 (radius: 10) [13:37:22 -4373.379675] SLOW spr round 45 (radius: 15) [13:38:25 -4373.379674] SLOW spr round 46 (radius: 20) [13:39:39 -4372.661344] SLOW spr round 47 (radius: 5) [13:40:40 -4372.660917] SLOW spr round 48 (radius: 10) [13:41:37 -4369.489860] SLOW spr round 49 (radius: 5) [13:42:34 -4369.487514] SLOW spr round 50 (radius: 10) [13:43:30 -4369.487142] SLOW spr round 51 (radius: 15) [13:44:32 -4369.487090] SLOW spr round 52 (radius: 20) [13:45:47 -4369.487083] SLOW spr round 53 (radius: 25) [13:47:14 -4369.487082] Model parameter optimization (eps = 0.100000) [13:47:21] ML tree search #15, logLikelihood: -4368.173650 [13:47:22 -31507.043117] Initial branch length optimization [13:47:22 -25153.654063] Model parameter optimization (eps = 10.000000) [13:47:37 -24857.267642] AUTODETECT spr round 1 (radius: 5) [13:48:28 -16382.324748] AUTODETECT spr round 2 (radius: 10) [13:49:25 -10312.679293] AUTODETECT spr round 3 (radius: 15) [13:50:28 -7518.443408] AUTODETECT spr round 4 (radius: 20) [13:51:32 -6368.637161] AUTODETECT spr round 5 (radius: 25) [13:52:41 -5732.462150] SPR radius for FAST iterations: 25 (autodetect) [13:52:41 -5732.462150] Model parameter optimization (eps = 3.000000) [13:52:55 -5714.879665] FAST spr round 1 (radius: 25) [13:53:52 -4546.716549] FAST spr round 2 (radius: 25) [13:54:46 -4510.809802] FAST spr round 3 (radius: 25) [13:55:40 -4510.400926] FAST spr round 4 (radius: 25) [13:56:33 -4510.399416] Model parameter optimization (eps = 1.000000) [13:56:36 -4509.590002] SLOW spr round 1 (radius: 5) [13:57:31 -4508.872120] SLOW spr round 2 (radius: 5) [13:58:26 -4508.870173] SLOW spr round 3 (radius: 10) [13:59:24 -4506.554710] SLOW spr round 4 (radius: 5) [14:00:21 -4506.290827] SLOW spr round 5 (radius: 5) [14:01:16 -4506.243283] SLOW spr round 6 (radius: 10) [14:02:13 -4494.350260] SLOW spr round 7 (radius: 5) [14:03:11 -4494.350231] SLOW spr round 8 (radius: 10) [14:04:08 -4494.350217] SLOW spr round 9 (radius: 15) [14:05:11 -4453.155216] SLOW spr round 10 (radius: 5) [14:06:12 -4436.412181] SLOW spr round 11 (radius: 5) [14:07:07 -4436.397872] SLOW spr round 12 (radius: 10) [14:08:05 -4436.397853] SLOW spr round 13 (radius: 15) [14:09:07 -4435.320915] SLOW spr round 14 (radius: 5) [14:10:09 -4435.320886] SLOW spr round 15 (radius: 10) [14:11:05 -4435.320881] SLOW spr round 16 (radius: 15) [14:12:07 -4432.908960] SLOW spr round 17 (radius: 5) [14:13:06 -4432.655969] SLOW spr round 18 (radius: 5) [14:14:03 -4431.728883] SLOW spr round 19 (radius: 5) [14:14:57 -4431.726624] SLOW spr round 20 (radius: 10) [14:15:54 -4431.725565] SLOW spr round 21 (radius: 15) [14:16:56 -4430.478553] SLOW spr round 22 (radius: 5) [14:17:56 -4430.062617] SLOW spr round 23 (radius: 5) [14:18:52 -4430.062590] SLOW spr round 24 (radius: 10) [14:19:49 -4430.062586] SLOW spr round 25 (radius: 15) [14:20:51 -4430.062583] SLOW spr round 26 (radius: 20) [14:22:03 -4405.155102] SLOW spr round 27 (radius: 5) [14:23:04 -4404.964991] SLOW spr round 28 (radius: 5) [14:24:00 -4404.963456] SLOW spr round 29 (radius: 10) [14:24:56 -4404.963069] SLOW spr round 30 (radius: 15) [14:25:57 -4404.963062] SLOW spr round 31 (radius: 20) [14:27:09 -4404.963060] SLOW spr round 32 (radius: 25) [14:28:35 -4402.760190] SLOW spr round 33 (radius: 5) [14:29:36 -4402.760187] SLOW spr round 34 (radius: 10) [14:30:34 -4402.760183] SLOW spr round 35 (radius: 15) [14:31:35 -4402.760181] SLOW spr round 36 (radius: 20) [14:32:49 -4402.760180] SLOW spr round 37 (radius: 25) [14:34:14 -4402.760180] Model parameter optimization (eps = 0.100000) [14:34:21] ML tree search #16, logLikelihood: -4401.061270 [14:34:21 -31344.618663] Initial branch length optimization [14:34:21 -25010.344275] Model parameter optimization (eps = 10.000000) [14:34:34 -24731.174411] AUTODETECT spr round 1 (radius: 5) [14:35:25 -16082.707562] AUTODETECT spr round 2 (radius: 10) [14:36:20 -10864.720704] AUTODETECT spr round 3 (radius: 15) [14:37:21 -8098.299942] AUTODETECT spr round 4 (radius: 20) [14:38:26 -6549.101411] AUTODETECT spr round 5 (radius: 25) [14:39:34 -6211.726174] SPR radius for FAST iterations: 25 (autodetect) [14:39:34 -6211.726174] Model parameter optimization (eps = 3.000000) [14:39:45 -6191.942600] FAST spr round 1 (radius: 25) [14:40:41 -4950.760282] FAST spr round 2 (radius: 25) [14:41:36 -4794.597333] FAST spr round 3 (radius: 25) [14:42:30 -4787.332245] FAST spr round 4 (radius: 25) [14:43:23 -4786.310338] FAST spr round 5 (radius: 25) [14:44:17 -4786.310330] Model parameter optimization (eps = 1.000000) [14:44:20 -4786.207091] SLOW spr round 1 (radius: 5) [14:45:17 -4784.256788] SLOW spr round 2 (radius: 5) [14:46:11 -4783.754667] SLOW spr round 3 (radius: 5) [14:47:05 -4783.754657] SLOW spr round 4 (radius: 10) [14:48:02 -4778.924468] SLOW spr round 5 (radius: 5) [14:49:01 -4767.987615] SLOW spr round 6 (radius: 5) [14:49:56 -4767.986910] SLOW spr round 7 (radius: 10) [14:50:52 -4767.835989] SLOW spr round 8 (radius: 5) [14:51:49 -4767.835966] SLOW spr round 9 (radius: 10) [14:52:45 -4767.835966] SLOW spr round 10 (radius: 15) [14:53:49 -4744.610272] SLOW spr round 11 (radius: 5) [14:54:49 -4741.580563] SLOW spr round 12 (radius: 5) [14:55:45 -4741.577562] SLOW spr round 13 (radius: 10) [14:56:42 -4741.577553] SLOW spr round 14 (radius: 15) [14:57:46 -4737.078701] SLOW spr round 15 (radius: 5) [14:58:47 -4737.053907] SLOW spr round 16 (radius: 10) [14:59:45 -4737.053907] SLOW spr round 17 (radius: 15) [15:00:49 -4735.957542] SLOW spr round 18 (radius: 5) [15:01:49 -4735.957541] SLOW spr round 19 (radius: 10) [15:02:47 -4735.957541] SLOW spr round 20 (radius: 15) [15:03:50 -4735.957541] SLOW spr round 21 (radius: 20) [15:05:07 -4734.265743] SLOW spr round 22 (radius: 5) [15:06:07 -4734.265703] SLOW spr round 23 (radius: 10) [15:07:05 -4734.265703] SLOW spr round 24 (radius: 15) [15:08:07 -4734.094475] SLOW spr round 25 (radius: 5) [15:09:07 -4734.093127] SLOW spr round 26 (radius: 10) [15:10:05 -4734.093111] SLOW spr round 27 (radius: 15) [15:11:09 -4734.093110] SLOW spr round 28 (radius: 20) [15:12:26 -4731.335784] SLOW spr round 29 (radius: 5) [15:13:27 -4723.045172] SLOW spr round 30 (radius: 5) [15:14:23 -4722.520425] SLOW spr round 31 (radius: 5) [15:15:18 -4722.519534] SLOW spr round 32 (radius: 10) [15:16:15 -4722.519507] SLOW spr round 33 (radius: 15) [15:17:17 -4722.519507] SLOW spr round 34 (radius: 20) [15:18:34 -4722.519507] SLOW spr round 35 (radius: 25) [15:20:04 -4717.380510] SLOW spr round 36 (radius: 5) [15:21:06 -4715.437941] SLOW spr round 37 (radius: 5) [15:22:04 -4715.401716] SLOW spr round 38 (radius: 10) [15:23:01 -4715.065364] SLOW spr round 39 (radius: 5) [15:23:59 -4714.898066] SLOW spr round 40 (radius: 5) [15:24:54 -4714.898062] SLOW spr round 41 (radius: 10) [15:25:51 -4714.898062] SLOW spr round 42 (radius: 15) [15:26:55 -4714.898058] SLOW spr round 43 (radius: 20) [15:28:12 -4714.898058] SLOW spr round 44 (radius: 25) [15:29:39 -4714.608251] SLOW spr round 45 (radius: 5) [15:30:39 -4714.608250] SLOW spr round 46 (radius: 10) [15:31:37 -4714.608241] SLOW spr round 47 (radius: 15) [15:32:41 -4714.608241] SLOW spr round 48 (radius: 20) [15:33:56 -4714.608241] SLOW spr round 49 (radius: 25) [15:35:22 -4704.916255] SLOW spr round 50 (radius: 5) [15:36:24 -4688.211276] SLOW spr round 51 (radius: 5) [15:37:21 -4681.472075] SLOW spr round 52 (radius: 5) [15:38:15 -4680.654921] SLOW spr round 53 (radius: 5) [15:39:10 -4680.654921] SLOW spr round 54 (radius: 10) [15:40:05 -4680.654921] SLOW spr round 55 (radius: 15) [15:41:10 -4679.876195] SLOW spr round 56 (radius: 5) [15:42:11 -4669.129333] SLOW spr round 57 (radius: 5) [15:43:07 -4660.212588] SLOW spr round 58 (radius: 5) [15:44:01 -4660.212588] SLOW spr round 59 (radius: 10) [15:44:57 -4660.212588] SLOW spr round 60 (radius: 15) [15:46:00 -4660.212588] SLOW spr round 61 (radius: 20) [15:47:17 -4660.212588] SLOW spr round 62 (radius: 25) [15:48:45 -4659.294579] SLOW spr round 63 (radius: 5) [15:49:46 -4659.294134] SLOW spr round 64 (radius: 10) [15:50:45 -4659.294122] SLOW spr round 65 (radius: 15) [15:51:48 -4659.294121] SLOW spr round 66 (radius: 20) [15:53:03 -4659.294121] SLOW spr round 67 (radius: 25) [15:54:29 -4659.294121] Model parameter optimization (eps = 0.100000) [15:54:34] ML tree search #17, logLikelihood: -4659.162489 [15:54:34 -31329.646821] Initial branch length optimization [15:54:35 -25089.699608] Model parameter optimization (eps = 10.000000) [15:54:51 -24763.738474] AUTODETECT spr round 1 (radius: 5) [15:55:41 -15990.001962] AUTODETECT spr round 2 (radius: 10) [15:56:37 -10242.476904] AUTODETECT spr round 3 (radius: 15) [15:57:36 -7627.358033] AUTODETECT spr round 4 (radius: 20) [15:58:43 -6506.046720] AUTODETECT spr round 5 (radius: 25) [15:59:50 -6121.852341] SPR radius for FAST iterations: 25 (autodetect) [15:59:50 -6121.852341] Model parameter optimization (eps = 3.000000) [16:00:01 -6116.244908] FAST spr round 1 (radius: 25) [16:00:58 -5053.877175] FAST spr round 2 (radius: 25) [16:01:53 -4929.702806] FAST spr round 3 (radius: 25) [16:02:47 -4898.290414] FAST spr round 4 (radius: 25) [16:03:40 -4891.655958] FAST spr round 5 (radius: 25) [16:04:33 -4882.916080] FAST spr round 6 (radius: 25) [16:05:26 -4882.915270] Model parameter optimization (eps = 1.000000) [16:05:33 -4879.811345] SLOW spr round 1 (radius: 5) [16:06:28 -4878.910945] SLOW spr round 2 (radius: 5) [16:07:22 -4878.909208] SLOW spr round 3 (radius: 10) [16:08:18 -4878.908302] SLOW spr round 4 (radius: 15) [16:09:21 -4871.525733] SLOW spr round 5 (radius: 5) [16:10:22 -4870.532936] SLOW spr round 6 (radius: 5) [16:11:18 -4870.532333] SLOW spr round 7 (radius: 10) [16:12:15 -4869.490743] SLOW spr round 8 (radius: 5) [16:13:13 -4869.490724] SLOW spr round 9 (radius: 10) [16:14:09 -4869.490724] SLOW spr round 10 (radius: 15) [16:15:11 -4864.391496] SLOW spr round 11 (radius: 5) [16:16:11 -4864.387854] SLOW spr round 12 (radius: 10) [16:17:08 -4863.391688] SLOW spr round 13 (radius: 5) [16:18:05 -4863.390875] SLOW spr round 14 (radius: 10) [16:19:02 -4862.941696] SLOW spr round 15 (radius: 5) [16:20:00 -4862.941694] SLOW spr round 16 (radius: 10) [16:20:56 -4862.941694] SLOW spr round 17 (radius: 15) [16:21:58 -4861.605208] SLOW spr round 18 (radius: 5) [16:22:58 -4861.605193] SLOW spr round 19 (radius: 10) [16:23:55 -4861.605189] SLOW spr round 20 (radius: 15) [16:24:58 -4861.605188] SLOW spr round 21 (radius: 20) [16:26:12 -4858.348913] SLOW spr round 22 (radius: 5) [16:27:15 -4854.960234] SLOW spr round 23 (radius: 5) [16:28:11 -4854.959950] SLOW spr round 24 (radius: 10) [16:29:06 -4854.657461] SLOW spr round 25 (radius: 5) [16:30:03 -4854.657434] SLOW spr round 26 (radius: 10) [16:30:59 -4854.657433] SLOW spr round 27 (radius: 15) [16:32:01 -4854.551784] SLOW spr round 28 (radius: 5) [16:33:01 -4854.551730] SLOW spr round 29 (radius: 10) [16:33:58 -4854.551730] SLOW spr round 30 (radius: 15) [16:34:59 -4852.982281] SLOW spr round 31 (radius: 5) [16:36:00 -4852.982265] SLOW spr round 32 (radius: 10) [16:36:57 -4852.399728] SLOW spr round 33 (radius: 5) [16:37:55 -4852.397420] SLOW spr round 34 (radius: 10) [16:38:52 -4852.397111] SLOW spr round 35 (radius: 15) [16:39:55 -4852.397064] SLOW spr round 36 (radius: 20) [16:41:08 -4848.089639] SLOW spr round 37 (radius: 5) [16:42:09 -4848.089430] SLOW spr round 38 (radius: 10) [16:43:06 -4848.089429] SLOW spr round 39 (radius: 15) [16:44:08 -4848.089429] SLOW spr round 40 (radius: 20) [16:45:21 -4848.089429] SLOW spr round 41 (radius: 25) [16:46:44 -4821.248091] SLOW spr round 42 (radius: 5) [16:47:46 -4763.687731] SLOW spr round 43 (radius: 5) [16:48:44 -4762.960532] SLOW spr round 44 (radius: 5) [16:49:38 -4762.960532] SLOW spr round 45 (radius: 10) [16:50:35 -4762.960532] SLOW spr round 46 (radius: 15) [16:51:37 -4762.960532] SLOW spr round 47 (radius: 20) [16:52:46 -4762.960532] SLOW spr round 48 (radius: 25) [16:54:00 -4762.594289] SLOW spr round 49 (radius: 5) [16:55:00 -4762.594289] SLOW spr round 50 (radius: 10) [16:55:57 -4762.594289] SLOW spr round 51 (radius: 15) [16:56:59 -4762.594289] SLOW spr round 52 (radius: 20) [16:58:07 -4762.594289] SLOW spr round 53 (radius: 25) [16:59:21 -4762.594289] Model parameter optimization (eps = 0.100000) [16:59:25] ML tree search #18, logLikelihood: -4762.265934 [16:59:25 -31593.910401] Initial branch length optimization [16:59:26 -25062.026912] Model parameter optimization (eps = 10.000000) [16:59:42 -24750.821735] AUTODETECT spr round 1 (radius: 5) [17:00:34 -16134.790245] AUTODETECT spr round 2 (radius: 10) [17:01:31 -10104.848706] AUTODETECT spr round 3 (radius: 15) [17:02:30 -7824.927263] AUTODETECT spr round 4 (radius: 20) [17:03:36 -6753.611765] AUTODETECT spr round 5 (radius: 25) [17:04:56 -5931.679644] SPR radius for FAST iterations: 25 (autodetect) [17:04:56 -5931.679644] Model parameter optimization (eps = 3.000000) [17:05:06 -5921.073409] FAST spr round 1 (radius: 25) [17:06:04 -4617.507491] FAST spr round 2 (radius: 25) [17:06:59 -4538.392200] FAST spr round 3 (radius: 25) [17:07:54 -4528.769330] FAST spr round 4 (radius: 25) [17:08:47 -4525.117032] FAST spr round 5 (radius: 25) [17:09:40 -4525.116861] Model parameter optimization (eps = 1.000000) [17:09:44 -4524.459096] SLOW spr round 1 (radius: 5) [17:10:39 -4519.570060] SLOW spr round 2 (radius: 5) [17:11:34 -4519.185234] SLOW spr round 3 (radius: 5) [17:12:29 -4519.185076] SLOW spr round 4 (radius: 10) [17:13:25 -4518.451384] SLOW spr round 5 (radius: 5) [17:14:23 -4516.606524] SLOW spr round 6 (radius: 5) [17:15:19 -4516.606482] SLOW spr round 7 (radius: 10) [17:16:16 -4516.016181] SLOW spr round 8 (radius: 5) [17:17:13 -4516.016116] SLOW spr round 9 (radius: 10) [17:18:10 -4515.553823] SLOW spr round 10 (radius: 5) [17:19:08 -4515.553792] SLOW spr round 11 (radius: 10) [17:20:05 -4515.553771] SLOW spr round 12 (radius: 15) [17:21:05 -4511.289526] SLOW spr round 13 (radius: 5) [17:22:05 -4511.289489] SLOW spr round 14 (radius: 10) [17:23:01 -4511.289479] SLOW spr round 15 (radius: 15) [17:24:01 -4511.289470] SLOW spr round 16 (radius: 20) [17:25:10 -4511.119867] SLOW spr round 17 (radius: 5) [17:26:10 -4511.119853] SLOW spr round 18 (radius: 10) [17:27:08 -4510.930485] SLOW spr round 19 (radius: 5) [17:28:04 -4510.930477] SLOW spr round 20 (radius: 10) [17:29:00 -4510.930467] SLOW spr round 21 (radius: 15) [17:30:01 -4509.299465] SLOW spr round 22 (radius: 5) [17:31:00 -4509.299458] SLOW spr round 23 (radius: 10) [17:31:57 -4509.299456] SLOW spr round 24 (radius: 15) [17:32:57 -4509.299454] SLOW spr round 25 (radius: 20) [17:34:06 -4509.299452] SLOW spr round 26 (radius: 25) [17:35:21 -4509.299450] Model parameter optimization (eps = 0.100000) [17:35:27] ML tree search #19, logLikelihood: -4509.198334 [17:35:27 -31591.304956] Initial branch length optimization [17:35:27 -25271.176328] Model parameter optimization (eps = 10.000000) [17:35:40 -24945.132929] AUTODETECT spr round 1 (radius: 5) [17:36:32 -15728.104171] AUTODETECT spr round 2 (radius: 10) [17:37:29 -10253.689420] AUTODETECT spr round 3 (radius: 15) [17:38:32 -7818.986056] AUTODETECT spr round 4 (radius: 20) [17:39:38 -6373.223543] AUTODETECT spr round 5 (radius: 25) [17:40:48 -6125.350286] SPR radius for FAST iterations: 25 (autodetect) [17:40:48 -6125.350286] Model parameter optimization (eps = 3.000000) [17:40:59 -6116.172493] FAST spr round 1 (radius: 25) [17:41:56 -5015.931128] FAST spr round 2 (radius: 25) [17:42:51 -4935.646021] FAST spr round 3 (radius: 25) [17:43:46 -4931.732467] FAST spr round 4 (radius: 25) [17:44:39 -4931.731394] Model parameter optimization (eps = 1.000000) [17:44:44 -4931.091391] SLOW spr round 1 (radius: 5) [17:45:38 -4928.028801] SLOW spr round 2 (radius: 5) [17:46:34 -4924.473273] SLOW spr round 3 (radius: 5) [17:47:28 -4923.376699] SLOW spr round 4 (radius: 5) [17:48:23 -4923.376575] SLOW spr round 5 (radius: 10) [17:49:21 -4913.908980] SLOW spr round 6 (radius: 5) [17:50:19 -4889.227626] SLOW spr round 7 (radius: 5) [17:51:15 -4888.054205] SLOW spr round 8 (radius: 5) [17:52:09 -4888.054119] SLOW spr round 9 (radius: 10) [17:53:05 -4888.054033] SLOW spr round 10 (radius: 15) [17:54:09 -4870.789788] SLOW spr round 11 (radius: 5) [17:55:10 -4839.206685] SLOW spr round 12 (radius: 5) [17:56:07 -4821.808698] SLOW spr round 13 (radius: 5) [17:57:01 -4821.805097] SLOW spr round 14 (radius: 10) [17:57:59 -4821.147501] SLOW spr round 15 (radius: 5) [17:58:56 -4821.147068] SLOW spr round 16 (radius: 10) [17:59:52 -4817.780220] SLOW spr round 17 (radius: 5) [18:00:50 -4817.780114] SLOW spr round 18 (radius: 10) [18:01:47 -4817.780023] SLOW spr round 19 (radius: 15) [18:02:49 -4812.088897] SLOW spr round 20 (radius: 5) [18:03:50 -4811.615757] SLOW spr round 21 (radius: 5) [18:04:46 -4811.614777] SLOW spr round 22 (radius: 10) [18:05:43 -4811.614719] SLOW spr round 23 (radius: 15) [18:06:46 -4811.614719] SLOW spr round 24 (radius: 20) [18:08:00 -4809.856966] SLOW spr round 25 (radius: 5) [18:09:01 -4809.753939] SLOW spr round 26 (radius: 5) [18:09:56 -4809.753255] SLOW spr round 27 (radius: 10) [18:10:53 -4809.753241] SLOW spr round 28 (radius: 15) [18:11:54 -4809.753241] SLOW spr round 29 (radius: 20) [18:13:07 -4809.753241] SLOW spr round 30 (radius: 25) [18:14:37 -4696.478016] SLOW spr round 31 (radius: 5) [18:15:39 -4628.528587] SLOW spr round 32 (radius: 5) [18:16:36 -4607.962177] SLOW spr round 33 (radius: 5) [18:17:31 -4607.962166] SLOW spr round 34 (radius: 10) [18:18:28 -4606.205285] SLOW spr round 35 (radius: 5) [18:19:24 -4603.683551] SLOW spr round 36 (radius: 5) [18:20:19 -4603.683551] SLOW spr round 37 (radius: 10) [18:21:16 -4602.464609] SLOW spr round 38 (radius: 5) [18:22:12 -4602.464609] SLOW spr round 39 (radius: 10) [18:23:09 -4600.079778] SLOW spr round 40 (radius: 5) [18:24:06 -4600.079775] SLOW spr round 41 (radius: 10) [18:25:03 -4600.079775] SLOW spr round 42 (radius: 15) [18:26:04 -4594.714767] SLOW spr round 43 (radius: 5) [18:27:04 -4584.366206] SLOW spr round 44 (radius: 5) [18:27:58 -4584.366205] SLOW spr round 45 (radius: 10) [18:28:55 -4584.366205] SLOW spr round 46 (radius: 15) [18:29:55 -4583.552257] SLOW spr round 47 (radius: 5) [18:30:54 -4583.552207] SLOW spr round 48 (radius: 10) [18:31:50 -4578.233941] SLOW spr round 49 (radius: 5) [18:32:45 -4578.233889] SLOW spr round 50 (radius: 10) [18:33:39 -4578.233887] SLOW spr round 51 (radius: 15) [18:34:40 -4575.177412] SLOW spr round 52 (radius: 5) [18:35:40 -4574.455961] SLOW spr round 53 (radius: 5) [18:36:34 -4574.455918] SLOW spr round 54 (radius: 10) [18:37:30 -4574.455910] SLOW spr round 55 (radius: 15) [18:38:32 -4574.455909] SLOW spr round 56 (radius: 20) [18:39:41 -4573.267246] SLOW spr round 57 (radius: 5) [18:40:42 -4572.101514] SLOW spr round 58 (radius: 5) [18:41:38 -4572.101502] SLOW spr round 59 (radius: 10) [18:42:34 -4572.101502] SLOW spr round 60 (radius: 15) [18:43:35 -4571.668742] SLOW spr round 61 (radius: 5) [18:44:34 -4571.263411] SLOW spr round 62 (radius: 5) [18:45:29 -4571.263007] SLOW spr round 63 (radius: 10) [18:46:25 -4571.263002] SLOW spr round 64 (radius: 15) [18:47:26 -4571.263002] SLOW spr round 65 (radius: 20) [18:48:34 -4571.263002] SLOW spr round 66 (radius: 25) [18:49:52 -4571.263002] Model parameter optimization (eps = 0.100000) [18:49:55] ML tree search #20, logLikelihood: -4571.203957 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.250015,0.571838) (0.200000,0.647341) (0.499995,1.126433) (0.049990,3.287710) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -4368.173650 AIC score: 12666.347301 / AICc score: 7739046.347301 / BIC score: 14622.961218 Free parameters (model + branch lengths): 1965 WARNING: Number of free parameters (K=1965) is larger than alignment size (n=20). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P35125/3_mltree/P35125.raxml.log Analysis started: 30-Jun-2021 18:04:06 / finished: 01-Jul-2021 12:54:02 Elapsed time: 67796.231 seconds Consumed energy: 5725.499 Wh (= 29 km in an electric car, or 143 km with an e-scooter!)