RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:26:26 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/2_msa/P34931_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/3_mltree/P34931.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647586 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/2_msa/P34931_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 641 sites WARNING: Sequences sp_P17156_HSP72_MOUSE_10090 and tr_G3H4Z8_G3H4Z8_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P17156_HSP72_MOUSE_10090 and sp_P14659_HSP72_RAT_10116 are exactly identical! WARNING: Sequences sp_P17156_HSP72_MOUSE_10090 and tr_A0A3Q0CUY5_A0A3Q0CUY5_MESAU_10036 are exactly identical! WARNING: Sequences sp_P17879_HS71B_MOUSE_10090 and sp_Q61696_HS71A_MOUSE_10090 are exactly identical! WARNING: Sequences sp_P63017_HSP7C_MOUSE_10090 and sp_P63018_HSP7C_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Z7F7_M3Z7F7_MUSPF_9669 and tr_H0XX81_H0XX81_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z7F7_M3Z7F7_MUSPF_9669 and tr_D2GYI3_D2GYI3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z7F7_M3Z7F7_MUSPF_9669 and tr_A0A2U3WKK5_A0A2U3WKK5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z7F7_M3Z7F7_MUSPF_9669 and tr_A0A2Y9L6J1_A0A2Y9L6J1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P02825_HSP71_DROME_7227 and sp_P82910_HSP70_DROME_7227 are exactly identical! WARNING: Sequences sp_Q8INI8_HSP72_DROME_7227 and sp_Q9BIR7_HSP75_DROME_7227 are exactly identical! WARNING: Sequences sp_Q8INI8_HSP72_DROME_7227 and sp_Q9BIS2_HSP73_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_G3RYM8_G3RYM8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_Q5RA83_Q5RA83_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_E2R0T6_E2R0T6_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2J8N1X7_A0A2J8N1X7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and sp_A2Q0Z1_HSP7C_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_I3M2W9_I3M2W9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_H0V2J1_H0V2J1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and sp_P11142_HSP7C_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_D2GYC0_D2GYC0_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and sp_P19120_HSP7C_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2I2UZM2_A0A2I2UZM2_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A0D9S441_A0A0D9S441_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A1S3A423_A0A1S3A423_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A1S3EMC9_A0A1S3EMC9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2K6D6I6_A0A2K6D6I6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2K5YIX8_A0A2K5YIX8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2R9C3N8_A0A2R9C3N8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2Y9K4R2_A0A2Y9K4R2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A2Y9MF35_A0A2Y9MF35_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I3HNE7_A0A2I3HNE7_NOMLE_61853 and tr_A0A384C157_A0A384C157_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1SBT8_G1SBT8_NOMLE_61853 and tr_A0A2I2ZTT2_A0A2I2ZTT2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1SBT8_G1SBT8_NOMLE_61853 and tr_F7D4C9_F7D4C9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1SBT8_G1SBT8_NOMLE_61853 and tr_A0A2K5MVH7_A0A2K5MVH7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1SBT8_G1SBT8_NOMLE_61853 and tr_A0A2K6CAD7_A0A2K6CAD7_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q5R7D3_HSP71_PONAB_9601 and sp_P0DMV8_HS71A_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5R7D3_HSP71_PONAB_9601 and sp_P0DMV9_HS71B_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q5R7D3_HSP71_PONAB_9601 and tr_G8F3W4_G8F3W4_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q5R7D3_HSP71_PONAB_9601 and tr_A0A0D9SD81_A0A0D9SD81_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1MSW3_G1MSW3_MELGA_9103 and tr_A0A091HLX5_A0A091HLX5_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1MSW3_G1MSW3_MELGA_9103 and tr_A0A3Q0GBJ6_A0A3Q0GBJ6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q294C1_Q294C1_DROPS_46245 and tr_B4GLA5_B4GLA5_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8N5B0_B8N5B0_ASPFN_332952 and tr_Q2UBH7_Q2UBH7_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8N5B0_B8N5B0_ASPFN_332952 and tr_A0A1S9DRB3_A0A1S9DRB3_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8N5B0_B8N5B0_ASPFN_332952 and tr_A0A2G7G316_A0A2G7G316_9EURO_656916 are exactly identical! WARNING: Sequences tr_F6V652_F6V652_MONDO_13616 and tr_G3W9P3_G3W9P3_SARHA_9305 are exactly identical! WARNING: Sequences sp_P0DMW0_HS71A_RAT_10116 and sp_P0DMW1_HS71B_RAT_10116 are exactly identical! WARNING: Sequences tr_K3XFF0_K3XFF0_SETIT_4555 and tr_A0A2T7DEQ7_A0A2T7DEQ7_9POAL_1504633 are exactly identical! WARNING: Sequences tr_A0A087ZQ27_A0A087ZQ27_APIME_7460 and tr_A0A2A3EG18_A0A2A3EG18_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158P0X1_A0A158P0X1_ATTCE_12957 and tr_A0A195AU32_A0A195AU32_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158P1Z0_A0A158P1Z0_ATTCE_12957 and tr_A0A195AWF7_A0A195AWF7_9HYME_520822 are exactly identical! WARNING: Sequences sp_P54652_HSP72_HUMAN_9606 and tr_G7PAI9_G7PAI9_MACFA_9541 are exactly identical! WARNING: Sequences sp_P54652_HSP72_HUMAN_9606 and tr_A0A0D9SDX8_A0A0D9SDX8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_J3NAF8_J3NAF8_ORYBR_4533 and tr_A0A0E0MID1_A0A0E0MID1_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0FLX2_A0A0E0FLX2_ORYNI_4536 and tr_I1PA08_I1PA08_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FLX2_A0A0E0FLX2_ORYNI_4536 and tr_A0A0E0NTB1_A0A0E0NTB1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0FLX2_A0A0E0FLX2_ORYNI_4536 and tr_A0A0D3FGV3_A0A0D3FGV3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FLX2_A0A0E0FLX2_ORYNI_4536 and tr_A0A0D9Z5D4_A0A0D9Z5D4_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0FLX2_A0A0E0FLX2_ORYNI_4536 and tr_Q10NA1_Q10NA1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0FVL6_A0A0E0FVL6_ORYNI_4536 and tr_I1NT64_I1NT64_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0FVL6_A0A0E0FVL6_ORYNI_4536 and tr_A0A0D3EW18_A0A0D3EW18_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0FVL6_A0A0E0FVL6_ORYNI_4536 and tr_A0A0D9YH29_A0A0D9YH29_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_F7CZ86_F7CZ86_MACMU_9544 and tr_A0A096MNL4_A0A096MNL4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7CZ86_F7CZ86_MACMU_9544 and tr_A0A2K5L398_A0A2K5L398_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7CZ86_F7CZ86_MACMU_9544 and tr_A0A2K6AMP8_A0A2K6AMP8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7CZ86_F7CZ86_MACMU_9544 and tr_A0A2K5XNE8_A0A2K5XNE8_MANLE_9568 are exactly identical! WARNING: Sequences tr_I1PA01_I1PA01_ORYGL_4538 and tr_A0A0E0CYQ9_A0A0E0CYQ9_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_I1PA01_I1PA01_ORYGL_4538 and tr_A0A0E0NTA1_A0A0E0NTA1_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1PA01_I1PA01_ORYGL_4538 and tr_A0A0D3FGU6_A0A0D3FGU6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1PA01_I1PA01_ORYGL_4538 and tr_Q10NA9_Q10NA9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1PWC2_I1PWC2_ORYGL_4538 and tr_A0A0D3G8L5_A0A0D3G8L5_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1R2A1_I1R2A1_ORYGL_4538 and tr_A0A0D3HQ80_A0A0D3HQ80_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1R2A1_I1R2A1_ORYGL_4538 and tr_A0A0D9Z4L7_A0A0D9Z4L7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1R2A1_I1R2A1_ORYGL_4538 and tr_Q53NM9_Q53NM9_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F4W666_F4W666_ACREC_103372 and tr_A0A195FKD0_A0A195FKD0_9HYME_34720 are exactly identical! WARNING: Sequences tr_B3S256_B3S256_TRIAD_10228 and tr_A0A369SJH0_A0A369SJH0_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3S8M5_B3S8M5_TRIAD_10228 and tr_A0A369RY85_A0A369RY85_9METZ_287889 are exactly identical! WARNING: Sequences tr_M7ZJV3_M7ZJV3_TRIUA_4572 and tr_W5GLX4_W5GLX4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8A8P8_M8A8P8_TRIUA_4572 and tr_A0A3B5Y3L5_A0A3B5Y3L5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A091EYJ5_A0A091EYJ5_CORBR_85066 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A091JDR9_A0A091JDR9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A091VF20_A0A091VF20_NIPNI_128390 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A087R5V2_A0A087R5V2_APTFO_9233 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A093HGK6_A0A093HGK6_STRCA_441894 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A099ZQT1_A0A099ZQT1_TINGU_94827 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A091GHP5_A0A091GHP5_9AVES_55661 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A0A0ATJ7_A0A0A0ATJ7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_R0L4K0_R0L4K0_ANAPL_8839 and tr_A0A093GGK5_A0A093GGK5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A067DI64_A0A067DI64_CITSI_2711 and tr_V4S4E8_V4S4E8_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A0D2QC61_A0A0D2QC61_GOSRA_29730 and tr_A0A1U8MPN8_A0A1U8MPN8_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RM07_A0A0D2RM07_GOSRA_29730 and tr_A0A1U8NNI0_A0A1U8NNI0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RXV5_A0A0D2RXV5_GOSRA_29730 and tr_A0A1U8HYT4_A0A1U8HYT4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2VCW1_A0A0D2VCW1_GOSRA_29730 and tr_D2D322_D2D322_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0N1II90_A0A0N1II90_PAPMA_76193 and tr_A0A194QIV8_A0A194QIV8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A2I0MPG2_A0A2I0MPG2_COLLI_8932 and tr_A0A1V4KAF4_A0A1V4KAF4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DAU6_A0A0V1DAU6_TRIBR_45882 and tr_A0A0V0VHE2_A0A0V0VHE2_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DAU6_A0A0V1DAU6_TRIBR_45882 and tr_A0A0V1LU59_A0A0V1LU59_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A195DMR5_A0A195DMR5_9HYME_471704 and tr_A0A151IKI9_A0A151IKI9_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3XTB8_A0A1S3XTB8_TOBAC_4097 and tr_A0A1J6KP74_A0A1J6KP74_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3XTB8_A0A1S3XTB8_TOBAC_4097 and tr_A0A1U7WSB9_A0A1U7WSB9_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YTD5_A0A1S3YTD5_TOBAC_4097 and tr_A0A1U7WVU0_A0A1U7WVU0_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AP80_A0A1S4AP80_TOBAC_4097 and tr_A0A1U7X1S7_A0A1U7X1S7_NICSY_4096 are exactly identical! WARNING: Sequences tr_I7GVS5_I7GVS5_TOBAC_4097 and tr_A0A1U7XDX7_A0A1U7XDX7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3H455_A0A1S3H455_LINUN_7574 and tr_A0A1S3IRS4_A0A1S3IRS4_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A226NE00_A0A226NE00_CALSU_9009 and tr_A0A226PMQ0_A0A226PMQ0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1U8EIB5_A0A1U8EIB5_CAPAN_4072 and tr_A0A2G3BEN2_A0A2G3BEN2_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8GLV8_A0A1U8GLV8_CAPAN_4072 and tr_A0A2G3CE27_A0A2G3CE27_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2ZDX8_A0A2G2ZDX8_CAPAN_4072 and tr_A0A2G3CBN7_A0A2G3CBN7_CAPCH_80379 are exactly identical! WARNING: Duplicate sequences found: 109 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.reduced.phy Alignment comprises 1 partitions and 641 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 641 Gaps: 2.25 % Invariant sites: 9.05 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/3_mltree/P34931.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 161 / 12880 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -90827.892530 [00:00:00 -90827.892530] Initial branch length optimization [00:00:01 -89370.110069] Model parameter optimization (eps = 0.100000) [00:00:46] Tree #1, final logLikelihood: -89097.861232 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.411963,0.338542) (0.344560,0.723056) (0.142101,1.370617) (0.101376,4.109755) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34931/4_raxmlng_ancestral/P34931.raxml.log Analysis started: 02-Jun-2021 18:26:26 / finished: 02-Jun-2021 18:27:19 Elapsed time: 53.103 seconds Consumed energy: 3.152 Wh