RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:18:37 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/2_msa/P34130_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/3_mltree/P34130.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647117 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/2_msa/P34130_nogap_msa.fasta [00:00:00] Loaded alignment with 385 taxa and 210 sites WARNING: Sequences tr_A0A2R8QCU0_A0A2R8QCU0_DANRE_7955 and sp_Q6YBR5_NGF_DANRE_7955 are exactly identical! WARNING: Sequences sp_P20181_NTF3_MOUSE_10090 and tr_H2NG72_H2NG72_PONAB_9601 are exactly identical! WARNING: Sequences sp_P20181_NTF3_MOUSE_10090 and tr_G7PJM4_G7PJM4_MACFA_9541 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and tr_A0A2J8S4K4_A0A2J8S4K4_PONAB_9601 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and sp_Q5IS78_BDNF_PANTR_9598 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and sp_Q0EAB7_BDNF_HORSE_9796 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and sp_P23363_BDNF_RAT_10116 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and sp_P23560_BDNF_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and sp_Q6LCI5_BDNF_AILME_9646 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and tr_G7PQI2_G7PQI2_MACFA_9541 are exactly identical! WARNING: Sequences sp_P21237_BDNF_MOUSE_10090 and tr_A0A0D9SD87_A0A0D9SD87_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YIF7_M3YIF7_MUSPF_9669 and tr_G3UNG9_G3UNG9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YIF7_M3YIF7_MUSPF_9669 and tr_A0A2Y9JQI6_A0A2Y9JQI6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2I2YFW4_A0A2I2YFW4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2I3S007_A0A2I3S007_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2I3NIJ2_A0A2I3NIJ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2K6CUQ6_A0A2K6CUQ6_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2K6AAE3_A0A2K6AAE3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GD87_A0A2I3GD87_NOMLE_61853 and tr_A0A2R9BWJ5_A0A2R9BWJ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A2I3TL08_A0A2I3TL08_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A1D5Q655_A0A1D5Q655_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A096MUL5_A0A096MUL5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A0D9REZ7_A0A0D9REZ7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A2K5L2G9_A0A2K5L2G9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A2K6DEE9_A0A2K6DEE9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A2K5XTA2_A0A2K5XTA2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QSM8_G1QSM8_NOMLE_61853 and tr_A0A384BI13_A0A384BI13_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2I2YAV7_A0A2I2YAV7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_G1SRK9_G1SRK9_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_H2RFU0_H2RFU0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_F6UM21_F6UM21_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_I3MDK3_I3MDK3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A1D5RG19_A0A1D5RG19_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2R8MMS6_A0A2R8MMS6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_G1M7K1_G1M7K1_AILME_9646 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2I3N6J1_A0A2I3N6J1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A1U7Q5I5_A0A1U7Q5I5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2K5LVJ0_A0A2K5LVJ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2K6AP99_A0A2K6AP99_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2K5ZF50_A0A2K5ZF50_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2R9A9K0_A0A2R9A9K0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2U3WIU7_A0A2U3WIU7_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A2U3XGJ0_A0A2U3XGJ0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1S859_G1S859_NOMLE_61853 and tr_A0A384BRB0_A0A384BRB0_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A0Q3TIA0_A0A0Q3TIA0_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A091J078_A0A091J078_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A093QF97_A0A093QF97_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A091UUV2_A0A091UUV2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A087RKD9_A0A087RKD9_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A091WAS4_A0A091WAS4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A091FT70_A0A091FT70_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NQZ9_G1NQZ9_MELGA_9103 and tr_A0A0A0B234_A0A0A0B234_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E2RLL3_E2RLL3_CANLF_9615 and tr_A0A0A0MPZ3_A0A0A0MPZ3_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2QGT8_H2QGT8_PANTR_9598 and sp_P34130_NTF4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QGT8_H2QGT8_PANTR_9598 and tr_A0A2R8ZKB9_A0A2R8ZKB9_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5Q0I4_W5Q0I4_SHEEP_9940 and sp_Q95106_BDNF_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q02193_BDNF_XIPMA_8083 and tr_A0A087YS52_A0A087YS52_POEFO_48698 are exactly identical! WARNING: Sequences tr_F6T3M7_F6T3M7_MACMU_9544 and tr_G7NX40_G7NX40_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6T3M7_F6T3M7_MACMU_9544 and tr_A0A0D9SAD2_A0A0D9SAD2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P14082_BDNF_PIG_9823 and tr_A0A2Y9F271_A0A2Y9F271_PHYCD_9755 are exactly identical! WARNING: Sequences tr_U3I7Q7_U3I7Q7_ANAPL_8839 and tr_A0A2I0MI82_A0A2I0MI82_COLLI_8932 are exactly identical! WARNING: Sequences tr_U3I7Q7_U3I7Q7_ANAPL_8839 and tr_A0A1V4JQG7_A0A1V4JQG7_PATFA_372326 are exactly identical! WARNING: Sequences tr_U3I7Q7_U3I7Q7_ANAPL_8839 and tr_A0A226NWG1_A0A226NWG1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A0D9SE51_A0A0D9SE51_CHLSB_60711 and tr_A0A2K6ART4_A0A2K6ART4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151MBN4_A0A151MBN4_ALLMI_8496 and tr_A0A1U7RUY6_A0A1U7RUY6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P6L6_A0A151P6L6_ALLMI_8496 and tr_A0A3Q0H2P4_A0A3Q0H2P4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091IZA8_A0A091IZA8_EGRGA_188379 and tr_A0A091UPX3_A0A091UPX3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IZA8_A0A091IZA8_EGRGA_188379 and tr_A0A0A0AMY1_A0A0A0AMY1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0MK17_A0A2I0MK17_COLLI_8932 and tr_A0A1V4K866_A0A1V4K866_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1L8GDT3_A0A1L8GDT3_XENLA_8355 and tr_Q63ZM5_Q63ZM5_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A226MD35_A0A226MD35_CALSU_9009 and tr_A0A226NSI2_A0A226NSI2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5L0J6_A0A2K5L0J6_CERAT_9531 and tr_A0A2K5XJ68_A0A2K5XJ68_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4CDD3_A0A2U4CDD3_TURTR_9739 and tr_A0A2Y9P2G5_A0A2Y9P2G5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CDD3_A0A2U4CDD3_TURTR_9739 and tr_A0A384A128_A0A384A128_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 74 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.reduced.phy Alignment comprises 1 partitions and 210 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 210 Gaps: 17.53 % Invariant sites: 1.43 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/3_mltree/P34130.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 53 / 4240 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -21753.340484 [00:00:00 -21753.340484] Initial branch length optimization [00:00:00 -20939.733738] Model parameter optimization (eps = 0.100000) [00:00:10] Tree #1, final logLikelihood: -20876.357461 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.170733,0.176084) (0.077575,0.274911) (0.464789,0.748334) (0.286903,2.094064) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P34130/4_raxmlng_ancestral/P34130.raxml.log Analysis started: 02-Jun-2021 18:18:37 / finished: 02-Jun-2021 18:18:49 Elapsed time: 11.614 seconds Consumed energy: 0.844 Wh