RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 18:03:00 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/2_msa/P31749_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/2_msa/P31749_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 343 sites WARNING: Sequences tr_B4QXQ5_B4QXQ5_DROSI_7240 and tr_B4HLD8_B4HLD8_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2R8QDD3_A0A2R8QDD3_DANRE_7955 and tr_E7F7I3_E7F7I3_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_H0ZD28_H0ZD28_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_U3KAB4_U3KAB4_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091E8Y5_A0A091E8Y5_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091JM43_A0A091JM43_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091UJF3_A0A091UJF3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A087QHZ5_A0A087QHZ5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A093I4C3_A0A093I4C3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091WP17_A0A091WP17_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A099ZAC9_A0A099ZAC9_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091FZU2_A0A091FZU2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A0A0B479_A0A0A0B479_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A2I0MTK2_A0A2I0MTK2_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A091HYH3_A0A091HYH3_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A1V4JKN4_A0A1V4JKN4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5NTY9_A0A1D5NTY9_CHICK_9031 and tr_A0A218V273_A0A218V273_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_G1NCZ2_G1NCZ2_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_H0Z0E9_H0Z0E9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_U3KES8_U3KES8_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A151NWR5_A0A151NWR5_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A093QJC5_A0A093QJC5_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A093JTU0_A0A093JTU0_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A091WFJ8_A0A091WFJ8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A2I0MAM9_A0A2I0MAM9_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NG47_F1NG47_CHICK_9031 and tr_A0A091I6E4_A0A091I6E4_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_G1NL48_G1NL48_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_H0ZRP6_H0ZRP6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_U3JJZ0_U3JJZ0_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A151M239_A0A151M239_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A0Q3X7R9_A0A0Q3X7R9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091EIH4_A0A091EIH4_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091J6B4_A0A091J6B4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091V881_A0A091V881_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A087R5C2_A0A087R5C2_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A093HG82_A0A093HG82_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091WJD0_A0A091WJD0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A099ZVH2_A0A099ZVH2_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091GBN6_A0A091GBN6_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A0A0A8F5_A0A0A0A8F5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A091HSE8_A0A091HSE8_CALAN_9244 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A1U7SR37_A0A1U7SR37_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A1V4KAM6_A0A1V4KAM6_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NMS0_F1NMS0_CHICK_9031 and tr_A0A218URE3_A0A218URE3_9PASE_299123 are exactly identical! WARNING: Sequences sp_P31750_AKT1_MOUSE_10090 and tr_G3H397_G3H397_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P31750_AKT1_MOUSE_10090 and sp_P47196_AKT1_RAT_10116 are exactly identical! WARNING: Sequences sp_P68404_KPCB_MOUSE_10090 and sp_P68403_KPCB_RAT_10116 are exactly identical! WARNING: Sequences sp_P68404_KPCB_MOUSE_10090 and sp_P05771_KPCB_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P68404_KPCB_MOUSE_10090 and tr_A0A0D9R2T7_A0A0D9R2T7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z1Y7_M3Z1Y7_MUSPF_9669 and tr_A0A2Y9L475_A0A2Y9L475_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2I2YIH1_A0A2I2YIH1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_H2PKD8_H2PKD8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2I3T8I3_A0A2I3T8I3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and sp_O00141_SGK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_F7GPM9_F7GPM9_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_G7P341_G7P341_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2I3M866_A0A2I3M866_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A0D9RVZ9_A0A0D9RVZ9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2K5P1E8_A0A2K5P1E8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2K6BV29_A0A2K6BV29_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2K5YMT6_A0A2K5YMT6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RXA9_G1RXA9_NOMLE_61853 and tr_A0A2R9CBV5_A0A2R9CBV5_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_G3QXL5_G3QXL5_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2J8TDN8_A0A2J8TDN8_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2I3T9Y4_A0A2I3T9Y4_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_F7CRF1_F7CRF1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_W5P7V7_W5P7V7_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_I3MFT2_I3MFT2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and sp_Q9Y243_AKT3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_F6R8N3_F6R8N3_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_G5AM38_G5AM38_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_F7IEX9_F7IEX9_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_G9BWQ3_G9BWQ3_PIG_9823 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_G7NWL3_G7NWL3_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_F1MYJ4_F1MYJ4_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A096MRG7_A0A096MRG7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A0D9RAE4_A0A0D9RAE4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A1U7QFZ6_A0A1U7QFZ6_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2K5M316_A0A2K5M316_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2K6DSR7_A0A2K6DSR7_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2K6AA78_A0A2K6AA78_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2R9BCQ8_A0A2R9BCQ8_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZB09_M3ZB09_NOMLE_61853 and tr_A0A2Y9TEP8_A0A2Y9TEP8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_H2NYU6_H2NYU6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_K7CDC2_K7CDC2_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and sp_P31751_AKT2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_F6QE96_F6QE96_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_G7PXL4_G7PXL4_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_D3VYT7_D3VYT7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_A0A0D9QUT3_A0A0D9QUT3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_A0A2K5N3Z5_A0A2K5N3Z5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_A0A2K6CZ34_A0A2K6CZ34_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_A0A2K5Z269_A0A2K5Z269_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2YDQ0_A0A2I2YDQ0_GORGO_9595 and tr_A0A2R9A1U2_A0A2R9A1U2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QZ70_G3QZ70_GORGO_9595 and tr_H2Q8F2_H2Q8F2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QZ70_G3QZ70_GORGO_9595 and tr_A0A2R9AS27_A0A2R9AS27_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2P1Z0_H2P1Z0_PONAB_9601 and tr_A0A2K6CK35_A0A2K6CK35_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2P1Z0_H2P1Z0_PONAB_9601 and tr_A0A2K5ZT61_A0A2K5ZT61_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and sp_P10830_KPCE_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_I3MJI3_I3MJI3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_H0WXN6_H0WXN6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_H0VV11_H0VV11_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_F7BIC2_F7BIC2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_G3SWS9_G3SWS9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_G7PM48_G7PM48_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A2I3LQL3_A0A2I3LQL3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A091CL19_A0A091CL19_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A0D9RLN1_A0A0D9RLN1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A1S2ZRE6_A0A1S2ZRE6_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A1S3FAS7_A0A1S3FAS7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A2K5NF50_A0A2K5NF50_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A2K6BZK0_A0A2K6BZK0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A2K5YJ45_A0A2K5YJ45_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1T644_G1T644_RABIT_9986 and tr_A0A2Y9D8M7_A0A2Y9D8M7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q294V1_Q294V1_DROPS_46245 and tr_B4GMK7_B4GMK7_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RJX4_E2RJX4_CANLF_9615 and tr_A0A2U3VLF0_A0A2U3VLF0_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RJX4_E2RJX4_CANLF_9615 and tr_A0A2U3Y3V3_A0A2U3Y3V3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1PA42_F1PA42_CANLF_9615 and tr_D2HJ43_D2HJ43_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PA42_F1PA42_CANLF_9615 and tr_A0A2U3YTM0_A0A2U3YTM0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1PA42_F1PA42_CANLF_9615 and tr_A0A384C368_A0A384C368_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_H0XFB6_H0XFB6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_G3THW8_G3THW8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_G1LRV9_G1LRV9_AILME_9646 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_A0A1S3AGW2_A0A1S3AGW2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_A0A2U3VY63_A0A2U3VY63_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_A0A2Y9JT87_A0A2Y9JT87_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1Q4F8_F1Q4F8_CANLF_9615 and tr_A0A384CDT1_A0A384CDT1_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2QKD7_H2QKD7_PANTR_9598 and tr_A0A2R9AL03_A0A2R9AL03_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and sp_P31749_AKT1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_F6RCU6_F6RCU6_MACMU_9544 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_G7PBQ9_G7PBQ9_MACFA_9541 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_A0A096NK32_A0A096NK32_PAPAN_9555 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_A0A0D9RBG0_A0A0D9RBG0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_A0A2K5L125_A0A2K5L125_CERAT_9531 are exactly identical! WARNING: Sequences tr_K7AGW5_K7AGW5_PANTR_9598 and tr_A0A2K6CQV7_A0A2K6CQV7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QP11_F6QP11_MONDO_13616 and tr_G3W4L9_G3W4L9_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GEK1_F7GEK1_MONDO_13616 and tr_K7FBR2_K7FBR2_PELSI_13735 are exactly identical! WARNING: Sequences tr_W5PZ92_W5PZ92_SHEEP_9940 and sp_A7MB74_SGK1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A087ZWA0_A0A087ZWA0_APIME_7460 and tr_A0A2A3EL82_A0A2A3EL82_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NSC5_A0A158NSC5_ATTCE_12957 and tr_F4W5K6_F4W5K6_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NSC5_A0A158NSC5_ATTCE_12957 and tr_A0A151X6Y9_A0A151X6Y9_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NSC5_A0A158NSC5_ATTCE_12957 and tr_A0A151I2J8_A0A151I2J8_9HYME_520822 are exactly identical! WARNING: Sequences tr_H2UBQ0_H2UBQ0_TAKRU_31033 and tr_H3DQB6_H3DQB6_TETNG_99883 are exactly identical! WARNING: Sequences tr_D0NWZ6_D0NWZ6_PHYIT_403677 and tr_A0A0W8CA52_A0A0W8CA52_PHYNI_4790 are exactly identical! WARNING: Sequences tr_D0NWZ6_D0NWZ6_PHYIT_403677 and tr_W2KAV1_W2KAV1_PHYPR_4792 are exactly identical! WARNING: Sequences tr_F7AR06_F7AR06_MACMU_9544 and tr_G7PGC3_G7PGC3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7AR06_F7AR06_MACMU_9544 and tr_A0A096NXB9_A0A096NXB9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_G7PAH0_G7PAH0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A096NVI4_A0A096NVI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K5KX36_A0A2K5KX36_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K6DL10_A0A2K6DL10_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7BUZ8_F7BUZ8_MACMU_9544 and tr_A0A2K6A797_A0A2K6A797_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_U3KBK9_U3KBK9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_A0A091F0N2_A0A091F0N2_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_A0A093Q9T6_A0A093Q9T6_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_A0A093KE35_A0A093KE35_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_A0A093H4W3_A0A093H4W3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZMR5_H0ZMR5_TAEGU_59729 and tr_A0A218V717_A0A218V717_9PASE_299123 are exactly identical! WARNING: Sequences tr_A8Y443_A8Y443_CAEBR_6238 and tr_A0A2G5TGR7_A0A2G5TGR7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1L8P0_G1L8P0_AILME_9646 and tr_A0A2Y9L4T2_A0A2Y9L4T2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1M1Q8_G1M1Q8_AILME_9646 and tr_M3WGH1_M3WGH1_FELCA_9685 are exactly identical! WARNING: Sequences tr_S2J1T4_S2J1T4_MUCC1_1220926 and tr_A0A162QNY9_A0A162QNY9_MUCCL_747725 are exactly identical! WARNING: Sequences tr_U3IK42_U3IK42_ANAPL_8839 and tr_A0A0Q3MBB5_A0A0Q3MBB5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_W2RGX1_W2RGX1_PHYPN_761204 and tr_A0A0W8CCH4_A0A0W8CCH4_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RGX1_W2RGX1_PHYPN_761204 and tr_W2HNZ3_W2HNZ3_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015IPQ3_A0A015IPQ3_9GLOM_1432141 and tr_U9UPL3_U9UPL3_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015JUS4_A0A015JUS4_9GLOM_1432141 and tr_A0A2I1GG89_A0A2I1GG89_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JUS4_A0A015JUS4_9GLOM_1432141 and tr_A0A2H5RZA7_A0A2H5RZA7_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A151MNL2_A0A151MNL2_ALLMI_8496 and tr_A0A1U7SE31_A0A1U7SE31_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NZB0_A0A151NZB0_ALLMI_8496 and tr_A0A1U7S5M8_A0A1U7S5M8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A093PVX9_A0A093PVX9_9PASS_328815 and tr_A0A093GPE5_A0A093GPE5_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A087QI42_A0A087QI42_APTFO_9233 and tr_A0A0A0AIK0_A0A0A0AIK0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0M2A5_A0A2I0M2A5_COLLI_8932 and tr_A0A1V4KL12_A0A1V4KL12_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MXW9_A0A2I0MXW9_COLLI_8932 and tr_A0A1V4KGL5_A0A1V4KGL5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0SNC6_A0A0V0SNC6_9BILA_6336 and tr_A0A0V1AG58_A0A0V1AG58_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0X785_A0A0V0X785_9BILA_92179 and tr_A0A0V0VUE6_A0A0V0VUE6_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0X785_A0A0V0X785_9BILA_92179 and tr_A0A0V1LT75_A0A0V1LT75_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0X785_A0A0V0X785_9BILA_92179 and tr_A0A0V1PFC8_A0A0V1PFC8_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0X785_A0A0V0X785_9BILA_92179 and tr_A0A0V0UHG7_A0A0V0UHG7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0P1BMT7_A0A0P1BMT7_9BASI_401625 and tr_A0A316VZL0_A0A316VZL0_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A1S3L778_A0A1S3L778_SALSA_8030 and tr_A0A060WDB5_A0A060WDB5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MAN8_A0A1S3MAN8_SALSA_8030 and tr_A0A060WWK9_A0A060WWK9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NTQ3_A0A1S3NTQ3_SALSA_8030 and tr_A0A060Y842_A0A060Y842_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S922_A0A1S3S922_SALSA_8030 and tr_A0A060VPQ2_A0A060VPQ2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0Q5Z8_A0A2D0Q5Z8_ICTPU_7998 and tr_A0A2D0Q8N4_A0A2D0Q8N4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QC44_A0A2D0QC44_ICTPU_7998 and tr_A0A2D0QDS2_A0A2D0QDS2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QM22_A0A2D0QM22_ICTPU_7998 and tr_A0A2D0QNY7_A0A2D0QNY7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QM22_A0A2D0QM22_ICTPU_7998 and tr_A0A2D0QPR0_A0A2D0QPR0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QZ93_A0A2D0QZ93_ICTPU_7998 and tr_A0A2D0QZY0_A0A2D0QZY0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RKM8_A0A2D0RKM8_ICTPU_7998 and tr_W5UQZ3_W5UQZ3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4A4P1_A0A2U4A4P1_TURTR_9739 and tr_A0A2Y9NJE3_A0A2Y9NJE3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3W5N5_A0A2U3W5N5_ODORO_9708 and tr_A0A2U3YAB8_A0A2U3YAB8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9M0K4_A0A2Y9M0K4_DELLE_9749 and tr_A0A2Y9SRL0_A0A2Y9SRL0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9M0K4_A0A2Y9M0K4_DELLE_9749 and tr_A0A384AUZ9_A0A384AUZ9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9NA69_A0A2Y9NA69_DELLE_9749 and tr_A0A384B162_A0A384B162_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 195 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.reduced.phy Alignment comprises 1 partitions and 343 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 343 / 343 Gaps: 3.03 % Invariant sites: 0.87 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 343 / 27440 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -472063.706796] Initial branch length optimization [00:00:08 -380117.263406] Model parameter optimization (eps = 10.000000) [00:01:40 -378954.333075] AUTODETECT spr round 1 (radius: 5) [00:06:19 -236140.062947] AUTODETECT spr round 2 (radius: 10) [00:10:56 -179982.441312] AUTODETECT spr round 3 (radius: 15) [00:15:59 -152244.127471] AUTODETECT spr round 4 (radius: 20) [00:21:49 -125488.017960] AUTODETECT spr round 5 (radius: 25) [00:29:05 -110202.370083] SPR radius for FAST iterations: 25 (autodetect) [00:29:05 -110202.370083] Model parameter optimization (eps = 3.000000) [00:29:38 -110146.121472] FAST spr round 1 (radius: 25) [00:34:29 -89537.365476] FAST spr round 2 (radius: 25) [00:38:31 -88140.552838] FAST spr round 3 (radius: 25) [00:41:33 -88081.879991] FAST spr round 4 (radius: 25) [00:44:10 -88077.402615] FAST spr round 5 (radius: 25) [00:46:36 -88077.402318] Model parameter optimization (eps = 1.000000) [00:46:57 -88075.346730] SLOW spr round 1 (radius: 5) [00:50:24 -88053.714088] SLOW spr round 2 (radius: 5) [00:53:45 -88047.118087] SLOW spr round 3 (radius: 5) [00:57:06 -88047.114258] SLOW spr round 4 (radius: 10) [01:00:47 -88046.895059] SLOW spr round 5 (radius: 5) [01:05:04 -88046.894871] SLOW spr round 6 (radius: 10) [01:09:07 -88046.894770] SLOW spr round 7 (radius: 15) [01:14:39 -88046.894742] SLOW spr round 8 (radius: 20) [01:22:42 -88046.894714] SLOW spr round 9 (radius: 25) [01:27:02] [worker #1] ML tree search #2, logLikelihood: -88045.992607 [01:33:21] [worker #3] ML tree search #4, logLikelihood: -88041.405450 [01:33:55 -88046.894685] Model parameter optimization (eps = 0.100000) [01:34:04] [worker #0] ML tree search #1, logLikelihood: -88046.838716 [01:34:04 -474988.931440] Initial branch length optimization [01:34:13 -381045.418898] Model parameter optimization (eps = 10.000000) [01:35:43 -379907.940359] AUTODETECT spr round 1 (radius: 5) [01:36:42] [worker #4] ML tree search #5, logLikelihood: -88065.347391 [01:39:36] [worker #2] ML tree search #3, logLikelihood: -88924.517731 [01:40:21 -236602.341721] AUTODETECT spr round 2 (radius: 10) [01:45:07 -180962.355325] AUTODETECT spr round 3 (radius: 15) [01:50:16 -149721.168812] AUTODETECT spr round 4 (radius: 20) [01:56:27 -125901.476282] AUTODETECT spr round 5 (radius: 25) [02:03:30 -108583.435696] SPR radius for FAST iterations: 25 (autodetect) [02:03:30 -108583.435696] Model parameter optimization (eps = 3.000000) [02:04:26 -108515.222123] FAST spr round 1 (radius: 25) [02:08:45 -89165.190107] FAST spr round 2 (radius: 25) [02:12:14 -88277.198412] FAST spr round 3 (radius: 25) [02:15:13 -88096.572748] FAST spr round 4 (radius: 25) [02:17:56 -88079.685240] FAST spr round 5 (radius: 25) [02:20:30 -88072.211434] FAST spr round 6 (radius: 25) [02:22:58 -88069.834841] FAST spr round 7 (radius: 25) [02:25:20 -88069.834615] Model parameter optimization (eps = 1.000000) [02:25:38 -88066.670211] SLOW spr round 1 (radius: 5) [02:28:55 -88054.893179] SLOW spr round 2 (radius: 5) [02:32:13 -88050.201402] SLOW spr round 3 (radius: 5) [02:35:36 -88047.072888] SLOW spr round 4 (radius: 5) [02:38:46 -88046.889748] SLOW spr round 5 (radius: 5) [02:41:55 -88046.889676] SLOW spr round 6 (radius: 10) [02:45:22 -88046.607268] SLOW spr round 7 (radius: 5) [02:49:35 -88046.607261] SLOW spr round 8 (radius: 10) [02:53:39 -88046.607260] SLOW spr round 9 (radius: 15) [02:59:15 -88045.907828] SLOW spr round 10 (radius: 5) [03:00:46] [worker #1] ML tree search #7, logLikelihood: -88033.409052 [03:03:30] [worker #2] ML tree search #8, logLikelihood: -88223.664077 [03:05:06 -88045.907572] SLOW spr round 11 (radius: 10) [03:09:33 -88045.907570] SLOW spr round 12 (radius: 15) [03:15:04 -88045.907569] SLOW spr round 13 (radius: 20) [03:21:30] [worker #4] ML tree search #10, logLikelihood: -88049.102771 [03:22:53 -88045.907569] SLOW spr round 14 (radius: 25) [03:29:47] [worker #3] ML tree search #9, logLikelihood: -88033.689172 [03:33:31 -88045.907569] Model parameter optimization (eps = 0.100000) [03:33:39] [worker #0] ML tree search #6, logLikelihood: -88045.890174 [03:33:40 -473254.788055] Initial branch length optimization [03:33:47 -379283.214775] Model parameter optimization (eps = 10.000000) [03:35:08 -378112.363643] AUTODETECT spr round 1 (radius: 5) [03:39:56 -242776.029115] AUTODETECT spr round 2 (radius: 10) [03:44:40 -183532.378410] AUTODETECT spr round 3 (radius: 15) [03:50:16 -135987.282861] AUTODETECT spr round 4 (radius: 20) [03:56:02 -117799.349540] AUTODETECT spr round 5 (radius: 25) [04:03:39 -106919.643751] SPR radius for FAST iterations: 25 (autodetect) [04:03:39 -106919.643751] Model parameter optimization (eps = 3.000000) [04:04:17 -106870.553956] FAST spr round 1 (radius: 25) [04:08:48 -89103.532990] FAST spr round 2 (radius: 25) [04:12:11 -88111.752410] FAST spr round 3 (radius: 25) [04:15:11 -88084.694538] FAST spr round 4 (radius: 25) [04:17:50 -88073.614244] FAST spr round 5 (radius: 25) [04:20:21 -88073.614172] Model parameter optimization (eps = 1.000000) [04:20:44 -88066.028082] SLOW spr round 1 (radius: 5) [04:24:09 -88045.419700] SLOW spr round 2 (radius: 5) [04:27:31 -88043.460731] SLOW spr round 3 (radius: 5) [04:30:52 -88043.177844] SLOW spr round 4 (radius: 5) [04:34:04 -88043.177812] SLOW spr round 5 (radius: 10) [04:37:37 -88039.732237] SLOW spr round 6 (radius: 5) [04:41:50 -88039.732145] SLOW spr round 7 (radius: 10) [04:45:51 -88039.732141] SLOW spr round 8 (radius: 15) [04:51:23 -88039.732056] SLOW spr round 9 (radius: 20) [04:52:39] [worker #1] ML tree search #12, logLikelihood: -88044.834843 [04:59:11 -88039.732055] SLOW spr round 10 (radius: 25) [05:05:40] [worker #2] ML tree search #13, logLikelihood: -88033.144022 [05:10:27 -88039.732054] Model parameter optimization (eps = 0.100000) [05:10:45] [worker #0] ML tree search #11, logLikelihood: -88039.411781 [05:10:45 -475556.012142] Initial branch length optimization [05:10:54 -381427.425970] Model parameter optimization (eps = 10.000000) [05:11:54 -380265.329030] AUTODETECT spr round 1 (radius: 5) [05:16:32 -244884.334212] AUTODETECT spr round 2 (radius: 10) [05:21:29 -179830.859725] AUTODETECT spr round 3 (radius: 15) [05:26:45 -137483.121630] AUTODETECT spr round 4 (radius: 20) [05:33:02 -120745.023668] AUTODETECT spr round 5 (radius: 25) [05:35:39] [worker #3] ML tree search #14, logLikelihood: -88054.171613 [05:39:53 -112849.439569] SPR radius for FAST iterations: 25 (autodetect) [05:39:53 -112849.439569] Model parameter optimization (eps = 3.000000) [05:40:26 -112794.638952] FAST spr round 1 (radius: 25) [05:45:00 -88961.705703] FAST spr round 2 (radius: 25) [05:46:43] [worker #4] ML tree search #15, logLikelihood: -88036.147606 [05:48:31 -88171.524328] FAST spr round 3 (radius: 25) [05:51:38 -88094.554475] FAST spr round 4 (radius: 25) [05:54:27 -88088.465306] FAST spr round 5 (radius: 25) [05:56:54 -88088.465270] Model parameter optimization (eps = 1.000000) [05:57:18 -88078.740425] SLOW spr round 1 (radius: 5) [06:00:48 -88062.729201] SLOW spr round 2 (radius: 5) [06:04:12 -88060.239882] SLOW spr round 3 (radius: 5) [06:07:34 -88057.984522] SLOW spr round 4 (radius: 5) [06:10:52 -88057.984281] SLOW spr round 5 (radius: 10) [06:14:28 -88055.684732] SLOW spr round 6 (radius: 5) [06:19:01 -88047.929425] SLOW spr round 7 (radius: 5) [06:22:44 -88045.554904] SLOW spr round 8 (radius: 5) [06:25:56] [worker #1] ML tree search #17, logLikelihood: -88038.554490 [06:26:08 -88045.022031] SLOW spr round 9 (radius: 5) [06:29:20 -88045.022001] SLOW spr round 10 (radius: 10) [06:32:47 -88045.021986] SLOW spr round 11 (radius: 15) [06:38:49 -88045.021984] SLOW spr round 12 (radius: 20) [06:45:09] [worker #2] ML tree search #18, logLikelihood: -88047.066241 [06:51:48 -88044.748606] SLOW spr round 13 (radius: 5) [06:58:41 -88044.748592] SLOW spr round 14 (radius: 10) [07:05:59 -88044.748578] SLOW spr round 15 (radius: 15) [07:14:20 -88044.748577] SLOW spr round 16 (radius: 20) [07:27:58 -88044.748576] SLOW spr round 17 (radius: 25) [07:28:23] [worker #3] ML tree search #19, logLikelihood: -88051.161838 [07:41:40 -88044.748575] Model parameter optimization (eps = 0.100000) [07:42:03] [worker #0] ML tree search #16, logLikelihood: -88043.869087 [08:11:35] [worker #4] ML tree search #20, logLikelihood: -88047.504816 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.229672,0.317379) (0.304806,0.426012) (0.283574,1.144430) (0.181948,2.598134) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -88033.144022 AIC score: 180076.288043 / AICc score: 8224136.288043 / BIC score: 187770.937590 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=343). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P31749/3_mltree/P31749.raxml.log Analysis started: 12-Jul-2021 18:03:00 / finished: 13-Jul-2021 02:14:36 Elapsed time: 29495.724 seconds