RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:16:58 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/2_msa/P30556_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/3_mltree/P30556.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647018 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/2_msa/P30556_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 359 sites WARNING: Sequences tr_A0A1L1RJW9_A0A1L1RJW9_CHICK_9031 and tr_A0A226NJ28_A0A226NJ28_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1L1RJW9_A0A1L1RJW9_CHICK_9031 and tr_A0A226P3P4_A0A226P3P4_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and tr_D2HXY3_D2HXY3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and sp_P56498_CXCR4_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and tr_A0A2U3W623_A0A2U3W623_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and tr_A0A2U3YFN5_A0A2U3YFN5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and tr_A0A2Y9J9B6_A0A2Y9J9B6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XT32_M3XT32_MUSPF_9669 and tr_A0A384CGV1_A0A384CGV1_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z6K1_M3Z6K1_MUSPF_9669 and tr_A0A384DF82_A0A384DF82_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3H1J1_A0A2I3H1J1_NOMLE_61853 and tr_A0A2I2ZTQ3_A0A2I2ZTQ3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H1J1_A0A2I3H1J1_NOMLE_61853 and tr_H2P7G7_H2P7G7_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H6V3_A0A2I3H6V3_NOMLE_61853 and tr_A0A2I3TX94_A0A2I3TX94_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H6V3_A0A2I3H6V3_NOMLE_61853 and sp_P51686_CCR9_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Z4K6_A0A2I2Z4K6_GORGO_9595 and sp_P51684_CCR6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZC48_A0A2I2ZC48_GORGO_9595 and tr_A0A2J8WSQ2_A0A2J8WSQ2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2ZC48_A0A2I2ZC48_GORGO_9595 and tr_A0A2I3RFP6_A0A2I3RFP6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZC48_A0A2I2ZC48_GORGO_9595 and sp_Q9GLN9_AGTR1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZVH0_A0A2I2ZVH0_GORGO_9595 and tr_H2PWK0_H2PWK0_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2ZVH0_A0A2I2ZVH0_GORGO_9595 and sp_P50052_AGTR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QNR5_G3QNR5_GORGO_9595 and tr_H2QJP1_H2QJP1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QNR5_G3QNR5_GORGO_9595 and sp_P25106_ACKR3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QNR5_G3QNR5_GORGO_9595 and tr_A0A2R8ZE81_A0A2R8ZE81_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QQ28_G3QQ28_GORGO_9595 and tr_A0A2J8TFE4_A0A2J8TFE4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QQ28_G3QQ28_GORGO_9595 and sp_Q9TV16_CXCR6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QQ28_G3QQ28_GORGO_9595 and tr_A0A2R8Z9I5_A0A2R8Z9I5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RC17_G3RC17_GORGO_9595 and tr_H2QM91_H2QM91_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RC17_G3RC17_GORGO_9595 and sp_P51679_CCR4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RC17_G3RC17_GORGO_9595 and tr_A0A2R8ZA62_A0A2R8ZA62_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3S9B3_G3S9B3_GORGO_9595 and sp_P35414_APJ_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3SLL0_A0A2I3SLL0_PANTR_9598 and tr_A0A2R8ZPK3_A0A2R8ZPK3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8LC41_A0A2J8LC41_PANTR_9598 and tr_A0A2R8Z9F6_A0A2R8Z9F6_PANPA_9597 are exactly identical! WARNING: Sequences sp_P61072_CXCR4_PANTR_9598 and sp_P61073_CXCR4_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P61072_CXCR4_PANTR_9598 and tr_A0A2R9C6K7_A0A2R9C6K7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5Q373_A0A1D5Q373_MACMU_9544 and tr_G7NY39_G7NY39_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5Q373_A0A1D5Q373_MACMU_9544 and tr_A0A096NQ44_A0A096NQ44_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q373_A0A1D5Q373_MACMU_9544 and tr_A0A2K5NXR5_A0A2K5NXR5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q373_A0A1D5Q373_MACMU_9544 and tr_A0A2K6BC31_A0A2K6BC31_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5Q373_A0A1D5Q373_MACMU_9544 and tr_A0A2K6AAY8_A0A2K6AAY8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5R973_A0A1D5R973_MACMU_9544 and tr_G7NZZ3_G7NZZ3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5R973_A0A1D5R973_MACMU_9544 and tr_A0A0D9RG76_A0A0D9RG76_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5R973_A0A1D5R973_MACMU_9544 and tr_A0A2K5NTG0_A0A2K5NTG0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5R973_A0A1D5R973_MACMU_9544 and tr_A0A2K6C0V5_A0A2K6C0V5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6VQA9_F6VQA9_MACMU_9544 and tr_G7P491_G7P491_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F959_F7F959_MACMU_9544 and tr_G7Q3I3_G7Q3I3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7F959_F7F959_MACMU_9544 and tr_A0A0D9SDR7_A0A0D9SDR7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7F959_F7F959_MACMU_9544 and tr_A0A2K5L0K8_A0A2K5L0K8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7F959_F7F959_MACMU_9544 and tr_A0A2K6B587_A0A2K6B587_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7F959_F7F959_MACMU_9544 and tr_A0A2K5XM69_A0A2K5XM69_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GTL4_F7GTL4_MACMU_9544 and tr_G7PKD0_G7PKD0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GTL4_F7GTL4_MACMU_9544 and tr_A0A096MKX4_A0A096MKX4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GTL4_F7GTL4_MACMU_9544 and tr_A0A2K5L2K2_A0A2K5L2K2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GTL4_F7GTL4_MACMU_9544 and tr_A0A2K6ARL8_A0A2K6ARL8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GUA3_F7GUA3_MACMU_9544 and tr_G7NYB7_G7NYB7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GUA3_F7GUA3_MACMU_9544 and tr_A0A096NRU6_A0A096NRU6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GUA3_F7GUA3_MACMU_9544 and tr_A0A0D9SC57_A0A0D9SC57_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GUA3_F7GUA3_MACMU_9544 and tr_G9IT94_G9IT94_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GUA3_F7GUA3_MACMU_9544 and tr_A0A2K6AVR0_A0A2K6AVR0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HD60_F7HD60_MACMU_9544 and tr_G7PN27_G7PN27_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HD60_F7HD60_MACMU_9544 and sp_P56491_CXCR4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HD60_F7HD60_MACMU_9544 and tr_A0A0D9RUS6_A0A0D9RUS6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HD60_F7HD60_MACMU_9544 and tr_A0A2K6C0G1_A0A2K6C0G1_MACNE_9545 are exactly identical! WARNING: Sequences sp_O97664_GPR1_MACMU_9544 and tr_A0A0D9SBQ0_A0A0D9SBQ0_CHLSB_60711 are exactly identical! WARNING: Sequences sp_O97664_GPR1_MACMU_9544 and tr_A0A2K5XU81_A0A2K5XU81_MANLE_9568 are exactly identical! WARNING: Sequences sp_O97666_APJ_MACMU_9544 and tr_A0A096MNI3_A0A096MNI3_PAPAN_9555 are exactly identical! WARNING: Sequences sp_O97666_APJ_MACMU_9544 and tr_A0A2K6B0X7_A0A2K6B0X7_MACNE_9545 are exactly identical! WARNING: Sequences sp_O97666_APJ_MACMU_9544 and tr_A0A2K5XBS1_A0A2K5XBS1_MANLE_9568 are exactly identical! WARNING: Sequences tr_D2H3B2_D2H3B2_AILME_9646 and tr_A0A2Y9KL18_A0A2Y9KL18_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A096NR01_A0A096NR01_PAPAN_9555 and tr_A0A2K5KP70_A0A2K5KP70_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096NR01_A0A096NR01_PAPAN_9555 and tr_A0A2K5XJP9_A0A2K5XJP9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3LRD8_A0A2I3LRD8_PAPAN_9555 and tr_A0A2K5Z8S4_A0A2K5Z8S4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A087QIM8_A0A087QIM8_APTFO_9233 and tr_A0A099ZZT9_A0A099ZZT9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087QIM8_A0A087QIM8_APTFO_9233 and tr_A0A2I0MGE7_A0A2I0MGE7_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A087QIM8_A0A087QIM8_APTFO_9233 and tr_A0A1V4K5V6_A0A1V4K5V6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091H4B7_A0A091H4B7_9AVES_55661 and tr_A0A093G5Z2_A0A093G5Z2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A226MHH4_A0A226MHH4_CALSU_9009 and tr_A0A226PBY7_A0A226PBY7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5KRT5_A0A2K5KRT5_CERAT_9531 and tr_A0A2K5ZZK3_A0A2K5ZZK3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2K5LYN5_A0A2K5LYN5_CERAT_9531 and sp_Q9N0Z0_CXCR6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2U3V8K9_A0A2U3V8K9_TURTR_9739 and tr_A0A2Y9MCE8_A0A2Y9MCE8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8K9_A0A2U3V8K9_TURTR_9739 and tr_A0A2Y9F496_A0A2Y9F496_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 79 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.reduced.phy Alignment comprises 1 partitions and 359 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 359 Gaps: 9.38 % Invariant sites: 1.11 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/3_mltree/P30556.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 90 / 7200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -157028.687749 [00:00:00 -157028.687749] Initial branch length optimization [00:00:01 -156829.352961] Model parameter optimization (eps = 0.100000) [00:00:49] Tree #1, final logLikelihood: -156479.067574 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.173992,0.330708) (0.244424,0.490569) (0.444438,1.115913) (0.137146,2.381398) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30556/4_raxmlng_ancestral/P30556.raxml.log Analysis started: 02-Jun-2021 18:16:58 / finished: 02-Jun-2021 18:17:51 Elapsed time: 52.888 seconds Consumed energy: 2.440 Wh