RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:06:01 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/2_msa/P30301_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/3_mltree/P30301.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646361 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/2_msa/P30301_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 263 sites WARNING: Sequences tr_B4QBL5_B4QBL5_DROSI_7240 and tr_B4HNI2_B4HNI2_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5P9U9_A0A1D5P9U9_CHICK_9031 and tr_G1NDY2_G1NDY2_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P9U9_A0A1D5P9U9_CHICK_9031 and tr_A0A226NS40_A0A226NS40_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1S800_G1S800_NOMLE_61853 and tr_A0A2I3S3K4_A0A2I3S3K4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S800_G1S800_NOMLE_61853 and tr_A0A2R9CFL8_A0A2R9CFL8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QSX6_G3QSX6_GORGO_9595 and tr_H2NH89_H2NH89_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QSX6_G3QSX6_GORGO_9595 and tr_H2Q5W2_H2Q5W2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QSX6_G3QSX6_GORGO_9595 and sp_P55064_AQP5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R332_G3R332_GORGO_9595 and sp_P29972_AQP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_A0A1D5RFU8_A0A1D5RFU8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_F7IQC1_F7IQC1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_G7PWJ7_G7PWJ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_A0A0D9RZ01_A0A0D9RZ01_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_A0A2K5NVA4_A0A2K5NVA4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R4L3_G3R4L3_GORGO_9595 and tr_A0A2K6A5T4_A0A2K6A5T4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RKA2_G3RKA2_GORGO_9595 and tr_H2Q690_H2Q690_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RKA2_G3RKA2_GORGO_9595 and sp_P30301_MIP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RKA2_G3RKA2_GORGO_9595 and tr_A0A2R9CLF0_A0A2R9CLF0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1ND84_G1ND84_MELGA_9103 and tr_A0A226ND65_A0A226ND65_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q29NF9_Q29NF9_DROPS_46245 and tr_B4G7T7_B4G7T7_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A0A0MPA8_A0A0A0MPA8_CANLF_9615 and sp_A2IBY8_MIP_CANLF_9615 are exactly identical! WARNING: Sequences tr_H2QED7_H2QED7_PANTR_9598 and sp_P55087_AQP4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QED7_H2QED7_PANTR_9598 and tr_A0A2R9AJM5_A0A2R9AJM5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7FSF9_F7FSF9_MONDO_13616 and tr_G3WQD1_G3WQD1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6SPF1_F6SPF1_HORSE_9796 and tr_A0A287AVU9_A0A287AVU9_PIG_9823 are exactly identical! WARNING: Sequences tr_F6SPF1_F6SPF1_HORSE_9796 and tr_A0A2Y9SH67_A0A2Y9SH67_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5Q9W7_W5Q9W7_SHEEP_9940 and sp_P79099_AQP2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NES3_A0A158NES3_ATTCE_12957 and tr_A0A195AV93_A0A195AV93_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3MKS2_I3MKS2_ICTTR_43179 and tr_A0A286XDA1_A0A286XDA1_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5QSD8_A0A1D5QSD8_MACMU_9544 and tr_A0A096N7Q5_A0A096N7Q5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5R9F2_A0A1D5R9F2_MACMU_9544 and tr_A0A2K5LNR4_A0A2K5LNR4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5R9F2_A0A1D5R9F2_MACMU_9544 and tr_A0A2K6E5Y4_A0A2K6E5Y4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6RG83_F6RG83_MACMU_9544 and tr_G7PII2_G7PII2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6RG83_F6RG83_MACMU_9544 and tr_A0A2K6C3R6_A0A2K6C3R6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6W6H1_F6W6H1_MACMU_9544 and tr_A0A096MRJ3_A0A096MRJ3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6W6H1_F6W6H1_MACMU_9544 and tr_A0A2K5MEU2_A0A2K5MEU2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6W6H1_F6W6H1_MACMU_9544 and tr_A0A2K6D532_A0A2K6D532_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6W6H1_F6W6H1_MACMU_9544 and tr_A0A2K5ZUN0_A0A2K5ZUN0_MANLE_9568 are exactly identical! WARNING: Sequences tr_A2YCI2_A2YCI2_ORYSI_39946 and tr_I1Q247_I1Q247_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2YCI2_A2YCI2_ORYSI_39946 and tr_A0A0D3GG55_A0A0D3GG55_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2YCI2_A2YCI2_ORYSI_39946 and tr_A0A0E0A940_A0A0E0A940_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2YCI2_A2YCI2_ORYSI_39946 and tr_A0A0E0LBA2_A0A0E0LBA2_ORYPU_4537 are exactly identical! WARNING: Sequences tr_H0YPZ9_H0YPZ9_TAEGU_59729 and tr_A0A218UE79_A0A218UE79_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0E0PXD2_A0A0E0PXD2_ORYRU_4529 and sp_Q5Z6F0_TIP22_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G1M6L3_G1M6L3_AILME_9646 and tr_A0A384C2P8_A0A384C2P8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M4EVV4_M4EVV4_BRARP_51351 and tr_A0A078GTR3_A0A078GTR3_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EVV4_M4EVV4_BRARP_51351 and tr_A0A0D2ZPE6_A0A0D2ZPE6_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M7Z4T9_M7Z4T9_TRIUA_4572 and tr_Q6QU77_Q6QU77_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M8A7B2_M8A7B2_TRIUA_4572 and tr_A0A3B6B4P0_A0A3B6B4P0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A067D719_A0A067D719_CITSI_2711 and tr_V4RYQ3_V4RYQ3_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067D719_A0A067D719_CITSI_2711 and tr_A0A2H5PFI8_A0A2H5PFI8_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067DDA2_A0A067DDA2_CITSI_2711 and tr_V4SS09_V4SS09_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A096NH11_A0A096NH11_PAPAN_9555 and tr_A0A2K5YUP4_A0A2K5YUP4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3LZP0_A0A2I3LZP0_PAPAN_9555 and tr_A0A2K5KV99_A0A2K5KV99_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A078G0V8_A0A078G0V8_BRANA_3708 and tr_A0A078JC48_A0A078JC48_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078ID51_A0A078ID51_BRANA_3708 and tr_A0A0D3CQ67_A0A0D3CQ67_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2MK21_A0A0D2MK21_GOSRA_29730 and tr_D9DBW6_D9DBW6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A093QE54_A0A093QE54_9PASS_328815 and tr_A0A2I0MVZ8_A0A2I0MVZ8_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A087RED3_A0A087RED3_APTFO_9233 and tr_A0A091W9J1_A0A091W9J1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A087RED3_A0A087RED3_APTFO_9233 and tr_A0A091G6C2_A0A091G6C2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A2I0MRK4_A0A2I0MRK4_COLLI_8932 and tr_A0A1V4KN74_A0A1V4KN74_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A076FNG8_A0A076FNG8_TOBAC_4097 and tr_A0A1U7XJ88_A0A1U7XJ88_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YER0_A0A1S3YER0_TOBAC_4097 and tr_A0A1U7VU15_A0A1U7VU15_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZEL4_A0A1S3ZEL4_TOBAC_4097 and tr_A0A1U7Y4Q3_A0A1U7Y4Q3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4DR39_A0A1S4DR39_TOBAC_4097 and tr_A0A1U7X3X7_A0A1U7X3X7_NICSY_4096 are exactly identical! WARNING: Sequences tr_Q9ZR68_Q9ZR68_TOBAC_4097 and tr_A0A1U7YC76_A0A1U7YC76_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3HWB6_A0A1S3HWB6_LINUN_7574 and tr_A0A1S3HWE8_A0A1S3HWE8_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A226MNI8_A0A226MNI8_CALSU_9009 and tr_A0A226NSI9_A0A226NSI9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0R8C7_A0A2D0R8C7_ICTPU_7998 and tr_A0A2D0R8D3_A0A2D0R8D3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SIT7_A0A2D0SIT7_ICTPU_7998 and tr_W5UF76_W5UF76_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2ZCT9_A0A2G2ZCT9_CAPAN_4072 and tr_A0A2G3CA14_A0A2G3CA14_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K5LEW0_A0A2K5LEW0_CERAT_9531 and tr_A0A2K6BZN0_A0A2K6BZN0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K6DKV2_A0A2K6DKV2_MACNE_9545 and tr_A0A2K6A4I5_A0A2K6A4I5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2P6N7H5_A0A2P6N7H5_9MYCE_1890364 and tr_A0A2P6N7I5_A0A2P6N7I5_9MYCE_1890364 are exactly identical! WARNING: Sequences tr_A0A2U4AYI7_A0A2U4AYI7_TURTR_9739 and tr_A0A2Y9P949_A0A2Y9P949_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 75 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.reduced.phy Alignment comprises 1 partitions and 263 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 263 Gaps: 9.43 % Invariant sites: 0.38 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/3_mltree/P30301.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 66 / 5280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -106119.157644 [00:00:00 -106119.157644] Initial branch length optimization [00:00:01 -105273.294862] Model parameter optimization (eps = 0.100000) [00:00:36] Tree #1, final logLikelihood: -104598.798075 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.251788,0.522225) (0.345363,0.727877) (0.250781,1.117562) (0.152068,2.215223) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P30301/4_raxmlng_ancestral/P30301.raxml.log Analysis started: 02-Jun-2021 18:06:01 / finished: 02-Jun-2021 18:06:40 Elapsed time: 39.302 seconds Consumed energy: 2.478 Wh