RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 18:07:03 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/2_msa/P30279_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/3_mltree/P30279.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102423 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/2_msa/P30279_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 289 sites WARNING: Sequences tr_F1NS84_F1NS84_CHICK_9031 and tr_R0JP78_R0JP78_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NS84_F1NS84_CHICK_9031 and tr_A0A226ME27_A0A226ME27_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NS84_F1NS84_CHICK_9031 and tr_A0A226P297_A0A226P297_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3YBN2_M3YBN2_MUSPF_9669 and tr_G1LGA9_G1LGA9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_F1PWA3_F1PWA3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_G1MB63_G1MB63_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_M3VU57_M3VU57_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_A0A2U3X1S4_A0A2U3X1S4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_A0A2Y9L386_A0A2Y9L386_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YD44_M3YD44_MUSPF_9669 and tr_A0A384D7P3_A0A384D7P3_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_G3RG37_G3RG37_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_H2R9R9_H2R9R9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and sp_O96020_CCNE2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_A0A096MVM7_A0A096MVM7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_A0A2K5P6N9_A0A2K5P6N9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_A0A2K6CI84_A0A2K6CI84_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_A0A2K5YEQ6_A0A2K5YEQ6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QTI1_G1QTI1_NOMLE_61853 and tr_A0A2R9A0P4_A0A2R9A0P4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A5A422_A5A422_CRIGR_10029 and tr_A0A1U7Q509_A0A1U7Q509_MESAU_10036 are exactly identical! WARNING: Sequences tr_D8RMN9_D8RMN9_SELML_88036 and tr_D8SLS0_D8SLS0_SELML_88036 are exactly identical! WARNING: Sequences tr_A0A2I2YD89_A0A2I2YD89_GORGO_9595 and tr_K7CI96_K7CI96_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2YD89_A0A2I2YD89_GORGO_9595 and sp_P24385_CCND1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R223_G3R223_GORGO_9595 and tr_H2Q584_H2Q584_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R223_G3R223_GORGO_9595 and sp_P30279_CCND2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R223_G3R223_GORGO_9595 and tr_A0A2R9BB92_A0A2R9BB92_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_H2PJ14_H2PJ14_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_A0A2I3RXN8_A0A2I3RXN8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_F7GU42_F7GU42_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_A8MN33_A8MN33_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_A0A0D9RFX8_A0A0D9RFX8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_A0A2K5NJ80_A0A2K5NJ80_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RGP1_G3RGP1_GORGO_9595 and tr_A0A2R9A185_A0A2R9A185_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8TAW1_A0A2J8TAW1_PONAB_9601 and tr_A0A096NFY6_A0A096NFY6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8TAW1_A0A2J8TAW1_PONAB_9601 and tr_A0A0D9RFF8_A0A0D9RFF8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8TAW1_A0A2J8TAW1_PONAB_9601 and tr_A0A2K5MLV5_A0A2K5MLV5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8TAW1_A0A2J8TAW1_PONAB_9601 and tr_A0A2K6BTL8_A0A2K6BTL8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2J8TAW1_A0A2J8TAW1_PONAB_9601 and tr_A0A2K6A1Z8_A0A2K6A1Z8_MANLE_9568 are exactly identical! WARNING: Sequences tr_W5PKX9_W5PKX9_SHEEP_9940 and sp_Q0P5D3_CCND2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5Q205_A0A3B5Q205_XIPMA_8083 and tr_A0A087X353_A0A087X353_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NF65_A0A158NF65_ATTCE_12957 and tr_A0A195BRG8_A0A195BRG8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NVQ1_A0A158NVQ1_ATTCE_12957 and tr_F4X7U2_F4X7U2_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NVQ1_A0A158NVQ1_ATTCE_12957 and tr_A0A151I1U0_A0A151I1U0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NVQ1_A0A158NVQ1_ATTCE_12957 and tr_A0A151IEX1_A0A151IEX1_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A286XN48_A0A286XN48_CAVPO_10141 and tr_A0A091DDH9_A0A091DDH9_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A0E0GY69_A0A0E0GY69_ORYNI_4536 and tr_A2XJF1_A2XJF1_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GY69_A0A0E0GY69_ORYNI_4536 and tr_A0A0D9ZAG1_A0A0D9ZAG1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0JBM2_A0A0E0JBM2_ORYNI_4536 and tr_A2ZM34_A2ZM34_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0K0JN45_A0A0K0JN45_BRUMA_6279 and tr_A0A0N4TW60_A0A0N4TW60_BRUPA_6280 are exactly identical! WARNING: Sequences tr_G7N5K1_G7N5K1_MACMU_9544 and tr_G7PJL4_G7PJL4_MACFA_9541 are exactly identical! WARNING: Sequences tr_H9FY18_H9FY18_MACMU_9544 and tr_A0A096MKW5_A0A096MKW5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9FY18_H9FY18_MACMU_9544 and tr_A0A2K6DH01_A0A2K6DH01_MACNE_9545 are exactly identical! WARNING: Sequences tr_A2XJF4_A2XJF4_ORYSI_39946 and sp_Q75I54_CCA31_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8AB18_B8AB18_ORYSI_39946 and tr_A0A0E0BZK6_A0A0E0BZK6_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_B8AB18_B8AB18_ORYSI_39946 and tr_A0A0D9Y5P8_A0A0D9Y5P8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1R906_I1R906_ORYGL_4538 and tr_A0A0E0BUJ7_A0A0E0BUJ7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A091EMQ0_A0A091EMQ0_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A093PNE9_A0A093PNE9_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A091UUS5_A0A091UUS5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A091FHZ1_A0A091FHZ1_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A0A0AJG5_A0A0A0AJG5_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A2I0MI34_A0A2I0MI34_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A093GE29_A0A093GE29_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0Z4M3_H0Z4M3_TAEGU_59729 and tr_A0A1V4JPR1_A0A1V4JPR1_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZPV7_H0ZPV7_TAEGU_59729 and tr_U3JGW9_U3JGW9_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZPV7_H0ZPV7_TAEGU_59729 and tr_A0A218UB38_A0A218UB38_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0E0RJ91_A0A0E0RJ91_ORYRU_4529 and sp_Q2QN26_CCA32_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B3RT03_B3RT03_TRIAD_10228 and tr_A0A369SFU2_A0A369SFU2_9METZ_287889 are exactly identical! WARNING: Sequences tr_F1MV86_F1MV86_BOVIN_9913 and tr_A0A2U3WHA3_A0A2U3WHA3_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1MV86_F1MV86_BOVIN_9913 and tr_A0A2Y9NR31_A0A2Y9NR31_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1MV86_F1MV86_BOVIN_9913 and tr_A0A2Y9FDQ2_A0A2Y9FDQ2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1MV86_F1MV86_BOVIN_9913 and tr_A0A384BF96_A0A384BF96_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A096XWW5_A0A096XWW5_WHEAT_4565 and tr_A0A3B6EEN6_A0A3B6EEN6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A2K6VEK5_A0A2K6VEK5_ONCVO_6282 and tr_A0A182EF64_A0A182EF64_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067GZE0_A0A067GZE0_CITSI_2711 and tr_A0A2H5PA72_A0A2H5PA72_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078ICL4_A0A078ICL4_BRANA_3708 and tr_A0A0D3DK27_A0A0D3DK27_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0A0KDS0_A0A0A0KDS0_CUCSA_3659 and tr_A0A1S3CS10_A0A1S3CS10_CUCME_3656 are exactly identical! WARNING: Sequences tr_V4SIF7_V4SIF7_9ROSI_85681 and tr_A0A2H5PIC6_A0A2H5PIC6_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2SN46_A0A0D2SN46_GOSRA_29730 and tr_A0A1U8J2N2_A0A1U8J2N2_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151MBJ5_A0A151MBJ5_ALLMI_8496 and tr_A0A1U7RAZ8_A0A1U7RAZ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151MXZ9_A0A151MXZ9_ALLMI_8496 and tr_A0A1U7RA41_A0A1U7RA41_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091UNM4_A0A091UNM4_NIPNI_128390 and tr_A0A087RJT7_A0A087RJT7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VGW2_A0A091VGW2_NIPNI_128390 and tr_A0A0A0B014_A0A0A0B014_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0MKH1_A0A2I0MKH1_COLLI_8932 and tr_A0A1V4K8C7_A0A1V4K8C7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DA10_A0A0V1DA10_TRIBR_45882 and tr_A0A0V0VG57_A0A0V0VG57_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DA10_A0A0V1DA10_TRIBR_45882 and tr_A0A0V0UGQ7_A0A0V0UGQ7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WLT7_A0A0V0WLT7_9BILA_92179 and tr_A0A0V1LDZ2_A0A0V1LDZ2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A151JAW8_A0A151JAW8_9HYME_471704 and tr_A0A195FWS5_A0A195FWS5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3YIF1_A0A1S3YIF1_TOBAC_4097 and tr_A0A1U7YSP3_A0A1U7YSP3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4C4K8_A0A1S4C4K8_TOBAC_4097 and tr_A0A1U7XII7_A0A1U7XII7_NICSY_4096 are exactly identical! WARNING: Sequences tr_O04399_O04399_TOBAC_4097 and tr_A0A1U7VSD7_A0A1U7VSD7_NICSY_4096 are exactly identical! WARNING: Sequences tr_Q40491_Q40491_TOBAC_4097 and tr_A0A1U7Y359_A0A1U7Y359_NICSY_4096 are exactly identical! WARNING: Sequences tr_Q40492_Q40492_TOBAC_4097 and tr_A0A1U7Y516_A0A1U7Y516_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3IZS5_A0A1S3IZS5_LINUN_7574 and tr_A0A1S3J048_A0A1S3J048_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A2D0Q5W7_A0A2D0Q5W7_ICTPU_7998 and tr_A0A2D0Q728_A0A2D0Q728_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8F7V3_A0A1U8F7V3_CAPAN_4072 and tr_A0A2G3B4G9_A0A2G3B4G9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A1U8FNU0_A0A1U8FNU0_CAPAN_4072 and tr_A0A2G3D775_A0A2G3D775_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2K6CZ76_A0A2K6CZ76_MACNE_9545 and tr_A0A2K5YUH2_A0A2K5YUH2_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 97 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.reduced.phy Alignment comprises 1 partitions and 289 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 289 Gaps: 15.67 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/3_mltree/P30279.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 73 / 5840 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -121130.685812 [00:00:00 -121130.685812] Initial branch length optimization [00:00:00 -120617.816429] Model parameter optimization (eps = 0.100000) [00:00:21] Tree #1, final logLikelihood: -120245.822403 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.154038,0.377289) (0.208345,0.404188) (0.338846,0.869833) (0.298771,1.884162) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P30279/4_raxmlng_ancestral/P30279.raxml.log Analysis started: 12-Jul-2021 18:07:03 / finished: 12-Jul-2021 18:07:27 Elapsed time: 23.952 seconds Consumed energy: 1.150 Wh