RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 23-Jun-2021 00:27:51 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/2_msa/P29033_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/3_mltree/P29033.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1624397271 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/2_msa/P29033_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 226 sites WARNING: Sequences tr_F1NRH7_F1NRH7_CHICK_9031 and sp_P36381_CXA8_CHICK_9031 are exactly identical! WARNING: Sequences tr_R4GLX1_R4GLX1_CHICK_9031 and tr_A0A226NG49_A0A226NG49_CALSU_9009 are exactly identical! WARNING: Sequences tr_R4GLX1_R4GLX1_CHICK_9031 and tr_A0A226PCU7_A0A226PCU7_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28230_CXB1_MOUSE_10090 and sp_P08033_CXB1_RAT_10116 are exactly identical! WARNING: Sequences sp_P28236_CXA8_MOUSE_10090 and tr_G3H2R1_G3H2R1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P28236_CXA8_MOUSE_10090 and sp_Q8K4Q9_CXA8_RAT_10116 are exactly identical! WARNING: Sequences sp_P28236_CXA8_MOUSE_10090 and tr_A0A1U7QZD0_A0A1U7QZD0_MESAU_10036 are exactly identical! WARNING: Sequences sp_P70689_CXB6_MOUSE_10090 and tr_Q6AZ42_Q6AZ42_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Z443_M3Z443_MUSPF_9669 and tr_A0A384DG47_A0A384DG47_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z459_M3Z459_MUSPF_9669 and tr_A0A2U3VNJ1_A0A2U3VNJ1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z459_M3Z459_MUSPF_9669 and tr_A0A2U3Y1F3_A0A2U3Y1F3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z4H1_M3Z4H1_MUSPF_9669 and tr_A0A2Y9IV64_A0A2Y9IV64_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z8M0_M3Z8M0_MUSPF_9669 and tr_A0A2Y9KXA1_A0A2Y9KXA1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1SAG7_G1SAG7_NOMLE_61853 and tr_H2PJU0_H2PJU0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3H8J4_G3H8J4_CRIGR_10029 and tr_A0A1U7QV52_A0A1U7QV52_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3H8J5_G3H8J5_CRIGR_10029 and tr_A0A3Q0CZR7_A0A3Q0CZR7_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QHB2_G3QHB2_GORGO_9595 and tr_H2NJC4_H2NJC4_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QHB2_G3QHB2_GORGO_9595 and tr_A0A2I3TGE0_A0A2I3TGE0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QHB2_G3QHB2_GORGO_9595 and sp_Q9Y6H8_CXA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHB2_G3QHB2_GORGO_9595 and tr_A0A2R8ZQN8_A0A2R8ZQN8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QPV8_G3QPV8_GORGO_9595 and sp_O95452_CXB6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QPV8_G3QPV8_GORGO_9595 and tr_A0A2R8ZJN9_A0A2R8ZJN9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R0Q7_G3R0Q7_GORGO_9595 and tr_H2R3E5_H2R3E5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R0Q7_G3R0Q7_GORGO_9595 and tr_A0A2R8ZL18_A0A2R8ZL18_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2J8UBJ6_A0A2J8UBJ6_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2J8IK75_A0A2J8IK75_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and sp_P08034_CXB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_G7NRV4_G7NRV4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_F6RE67_F6RE67_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_G8F3U7_G8F3U7_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A096NCL7_A0A096NCL7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A0D9SAJ6_A0A0D9SAJ6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2K5L451_A0A2K5L451_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2K6AQJ1_A0A2K6AQJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2K5XK00_A0A2K5XK00_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R5C8_G3R5C8_GORGO_9595 and tr_A0A2R8ZC06_A0A2R8ZC06_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RDV7_G3RDV7_GORGO_9595 and tr_H2QTE9_H2QTE9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RDV7_G3RDV7_GORGO_9595 and sp_Q969M2_CXA10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RDV7_G3RDV7_GORGO_9595 and tr_A0A2R9C738_A0A2R9C738_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_H2RAA6_H2RAA6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and sp_P29033_CXB2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_A0A2R8ZIA2_A0A2R8ZIA2_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2QYR1_E2QYR1_CANLF_9615 and tr_M3WLD3_M3WLD3_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2PZV2_H2PZV2_PANTR_9598 and sp_P48165_CXA8_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PZV2_H2PZV2_PANTR_9598 and tr_A0A2R9AEB0_A0A2R9AEB0_PANPA_9597 are exactly identical! WARNING: Sequences sp_P55917_CXA8_SHEEP_9940 and tr_W5PRU6_W5PRU6_SHEEP_9940 are exactly identical! WARNING: Sequences tr_W5Q5F9_W5Q5F9_SHEEP_9940 and sp_O18968_CXB1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5Q0U4_A0A3B5Q0U4_XIPMA_8083 and tr_A0A087YNB5_A0A087YNB5_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZPE0_M3ZPE0_XIPMA_8083 and tr_G3NHJ7_G3NHJ7_GASAC_69293 are exactly identical! WARNING: Sequences tr_M3ZPE0_M3ZPE0_XIPMA_8083 and tr_A0A087YQF9_A0A087YQF9_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZPE0_M3ZPE0_XIPMA_8083 and tr_A0A2I4CY10_A0A2I4CY10_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AP75_M4AP75_XIPMA_8083 and tr_A0A087YSQ9_A0A087YSQ9_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3NEZ3_I3NEZ3_ICTTR_43179 and tr_H0XXY5_H0XXY5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_I3NEZ3_I3NEZ3_ICTTR_43179 and tr_G3TIU5_G3TIU5_LOXAF_9785 are exactly identical! WARNING: Sequences tr_I3NEZ3_I3NEZ3_ICTTR_43179 and tr_A0A091DGQ1_A0A091DGQ1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_I3NEZ3_I3NEZ3_ICTTR_43179 and tr_A0A1S3GE15_A0A1S3GE15_DIPOR_10020 are exactly identical! WARNING: Sequences tr_I3NEZ3_I3NEZ3_ICTTR_43179 and tr_A0A1U7SNE3_A0A1U7SNE3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_G7P419_G7P419_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_A0A096NB23_A0A096NB23_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_A0A0D9SAB4_A0A0D9SAB4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_A0A2K5KKI7_A0A2K5KKI7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_A0A2K5YMG1_A0A2K5YMG1_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7D0V5_F7D0V5_MACMU_9544 and tr_G7NTR0_G7NTR0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7D0V5_F7D0V5_MACMU_9544 and tr_A0A2K6BDF7_A0A2K6BDF7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GQL5_F7GQL5_MACMU_9544 and tr_G7NTG2_G7NTG2_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GQL5_F7GQL5_MACMU_9544 and tr_A0A0D9S909_A0A0D9S909_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GQL5_F7GQL5_MACMU_9544 and tr_A0A2K5KJJ1_A0A2K5KJJ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GQL5_F7GQL5_MACMU_9544 and tr_A0A2K6AQG7_A0A2K6AQG7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GQL5_F7GQL5_MACMU_9544 and tr_A0A2K5XLJ3_A0A2K5XLJ3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GQL8_F7GQL8_MACMU_9544 and tr_G7NTG1_G7NTG1_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GQL8_F7GQL8_MACMU_9544 and tr_A0A2K6APQ9_A0A2K6APQ9_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GU11_F7GU11_MACMU_9544 and tr_G7NTG3_G7NTG3_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_G7PVU0_G7PVU0_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A096NEK9_A0A096NEK9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K5KWG7_A0A2K5KWG7_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K6B8A4_A0A2K6B8A4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K5XKN6_A0A2K5XKN6_MANLE_9568 are exactly identical! WARNING: Sequences tr_B5KFG1_B5KFG1_TAEGU_59729 and tr_A0A218ULP9_A0A218ULP9_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YU25_H0YU25_TAEGU_59729 and tr_H0YU26_H0YU26_TAEGU_59729 are exactly identical! WARNING: Sequences tr_D2I264_D2I264_AILME_9646 and tr_A0A2U3W0I3_A0A2U3W0I3_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2I6K6_D2I6K6_AILME_9646 and tr_A0A384C7A8_A0A384C7A8_URSMA_29073 are exactly identical! WARNING: Sequences tr_G7PVT9_G7PVT9_MACFA_9541 and tr_A0A096NBF9_A0A096NBF9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PVT9_G7PVT9_MACFA_9541 and tr_A0A2K6AXW9_A0A2K6AXW9_MACNE_9545 are exactly identical! WARNING: Sequences tr_U3KJX7_U3KJX7_FICAL_59894 and tr_A0A091EK79_A0A091EK79_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3KJX7_U3KJX7_FICAL_59894 and tr_A0A091IZU9_A0A091IZU9_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A087YR88_A0A087YR88_POEFO_48698 and tr_A0A087YR90_A0A087YR90_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A096N3G0_A0A096N3G0_PAPAN_9555 and tr_A0A2K5KU08_A0A2K5KU08_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N3G0_A0A096N3G0_PAPAN_9555 and tr_A0A2K5YEU8_A0A2K5YEU8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096N7C2_A0A096N7C2_PAPAN_9555 and tr_A0A2K5XUY1_A0A2K5XUY1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0D9SAG7_A0A0D9SAG7_CHLSB_60711 and tr_A0A2K6ATT9_A0A2K6ATT9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151MTZ1_A0A151MTZ1_ALLMI_8496 and tr_A0A1U7RL26_A0A1U7RL26_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0A0AUS7_A0A0A0AUS7_CHAVO_50402 and tr_A0A2I0LPB4_A0A2I0LPB4_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A2I0MCX1_A0A2I0MCX1_COLLI_8932 and tr_A0A1V4KBA4_A0A1V4KBA4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MS07_A0A2I0MS07_COLLI_8932 and tr_A0A1V4J305_A0A1V4J305_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3MR78_A0A1S3MR78_SALSA_8030 and tr_A0A1S3MU07_A0A1S3MU07_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3MR78_A0A1S3MR78_SALSA_8030 and tr_A0A060X2E8_A0A060X2E8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MR78_A0A1S3MR78_SALSA_8030 and tr_A0A060XBC3_A0A060XBC3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MWK2_A0A1S3MWK2_SALSA_8030 and tr_A0A1S3MWV7_A0A1S3MWV7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3P3F6_A0A1S3P3F6_SALSA_8030 and tr_A0A1S3RUJ7_A0A1S3RUJ7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3P3F6_A0A1S3P3F6_SALSA_8030 and tr_A0A060W0F1_A0A060W0F1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P3F6_A0A1S3P3F6_SALSA_8030 and tr_A0A060XNL1_A0A060XNL1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PP67_A0A1S3PP67_SALSA_8030 and tr_A0A060XXD2_A0A060XXD2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RJQ1_A0A1S3RJQ1_SALSA_8030 and tr_B5X1M7_B5X1M7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RJQ1_A0A1S3RJQ1_SALSA_8030 and tr_A0A060Y7U7_A0A060Y7U7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MG12_A0A226MG12_CALSU_9009 and tr_A0A226PIA3_A0A226PIA3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MQ62_A0A226MQ62_CALSU_9009 and tr_A0A226PNS0_A0A226PNS0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NFP6_A0A226NFP6_CALSU_9009 and tr_A0A226PDR8_A0A226PDR8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NGN4_A0A226NGN4_CALSU_9009 and tr_A0A226PCQ5_A0A226PCQ5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NL82_A0A226NL82_CALSU_9009 and tr_A0A226P8E7_A0A226P8E7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PKL8_A0A2D0PKL8_ICTPU_7998 and tr_W5UIE0_W5UIE0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3UYN2_A0A2U3UYN2_TURTR_9739 and tr_A0A2Y9N610_A0A2Y9N610_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4A0Z2_A0A2U4A0Z2_TURTR_9739 and tr_A0A2Y9P001_A0A2Y9P001_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BHE8_A0A2U4BHE8_TURTR_9739 and tr_A0A2Y9N761_A0A2Y9N761_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CG68_A0A2U4CG68_TURTR_9739 and tr_A0A2Y9MHU6_A0A2Y9MHU6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CG68_A0A2U4CG68_TURTR_9739 and tr_A0A384A8N5_A0A384A8N5_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9NHJ0_A0A2Y9NHJ0_DELLE_9749 and tr_A0A384A5F4_A0A384A5F4_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 116 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.reduced.phy Alignment comprises 1 partitions and 226 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 226 Gaps: 3.39 % Invariant sites: 3.10 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/3_mltree/P29033.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 57 / 4560 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -58110.759140 [00:00:00 -58110.759140] Initial branch length optimization [00:00:00 -56032.038626] Model parameter optimization (eps = 0.100000) [00:00:26] Tree #1, final logLikelihood: -55907.896013 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.306121,0.235786) (0.308588,0.448403) (0.275473,1.467257) (0.109817,3.508182) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/030621_run/phylogeny-snakemake/results/P29033/4_raxmlng_ancestral/P29033.raxml.log Analysis started: 23-Jun-2021 00:27:51 / finished: 23-Jun-2021 00:28:20 Elapsed time: 28.582 seconds Consumed energy: 1.677 Wh