RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:16:07 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/2_msa/P28472_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/3_mltree/P28472.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805367 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/2_msa/P28472_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 473 sites WARNING: Sequences tr_B4NUH8_B4NUH8_DROSI_7240 and sp_Q08832_GBRB3_DROME_7227 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_H0YT70_H0YT70_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_U3IZZ9_U3IZZ9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A091ET31_A0A091ET31_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A087REJ5_A0A087REJ5_APTFO_9233 are exactly identical! WARNING: Sequences tr_F6SVX7_F6SVX7_CHICK_9031 and tr_A0A218V2U1_A0A218V2U1_9PASE_299123 are exactly identical! WARNING: Sequences sp_P63080_GBRB3_MOUSE_10090 and sp_P63079_GBRB3_RAT_10116 are exactly identical! WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and sp_P63138_GBRB2_RAT_10116 are exactly identical! WARNING: Sequences sp_P63137_GBRB2_MOUSE_10090 and tr_A0A1U7QE51_A0A1U7QE51_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XNI6_M3XNI6_MUSPF_9669 and tr_A0A2Y9L648_A0A2Y9L648_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_G1L9J8_G1L9J8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_A0A2U3VMT7_A0A2U3VMT7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y0Y5_M3Y0Y5_MUSPF_9669 and tr_A0A2Y9JQ35_A0A2Y9JQ35_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YP67_M3YP67_MUSPF_9669 and tr_L7N0C0_L7N0C0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YP67_M3YP67_MUSPF_9669 and tr_A0A2U3VC36_A0A2U3VC36_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YP67_M3YP67_MUSPF_9669 and tr_A0A2Y9IKP5_A0A2Y9IKP5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YP67_M3YP67_MUSPF_9669 and tr_A0A384C705_A0A384C705_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_G3RF14_G3RF14_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2J8X6Z9_A0A2J8X6Z9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2J8NKG3_A0A2J8NKG3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_H0VSU8_H0VSU8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and sp_P47870_GBRB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and sp_D1LYT2_GBRB2_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_G5ARH5_G5ARH5_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_F7DAV1_F7DAV1_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A287BG52_A0A287BG52_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_G7P6T5_G7P6T5_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A341ZMF7_A0A341ZMF7_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2I3N1S0_A0A2I3N1S0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A0D9RD87_A0A0D9RD87_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A3Q0DMG4_A0A3Q0DMG4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2K5NFC3_A0A2K5NFC3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2K6BER5_A0A2K6BER5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2K5XEM9_A0A2K5XEM9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2R9C8C8_A0A2R9C8C8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I4HY33_A0A2I4HY33_NOMLE_61853 and tr_A0A2Y9DC37_A0A2Y9DC37_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_F6W0N4_F6W0N4_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_G7Q3Q4_G7Q3Q4_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_A0A096P0A0_A0A096P0A0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_A0A0D9RXL0_A0A0D9RXL0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_A0A2K5P2R6_A0A2K5P2R6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_A0A2K6AWQ7_A0A2K6AWQ7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RRN1_G1RRN1_NOMLE_61853 and tr_A0A2K5ZDA8_A0A2K5ZDA8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QMM3_G3QMM3_GORGO_9595 and tr_A0A2J8LXV6_A0A2J8LXV6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QMM3_G3QMM3_GORGO_9595 and sp_O00591_GBRP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QMM3_G3QMM3_GORGO_9595 and tr_A0A2R8ZJ77_A0A2R8ZJ77_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RXD5_G3RXD5_GORGO_9595 and sp_P24046_GBRR1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_H2PD83_H2PD83_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_H2QPE8_H2QPE8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and sp_P18505_GBRB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SKE7_G3SKE7_GORGO_9595 and tr_A0A2R9C4H8_A0A2R9C4H8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A0Q3URZ9_A0A0Q3URZ9_AMAAE_12930 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A091KGB3_A0A091KGB3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A091GA53_A0A091GA53_9AVES_55661 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A0A0A4Y2_A0A0A0A4Y2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A2I0MA70_A0A2I0MA70_COLLI_8932 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A091IB21_A0A091IB21_CALAN_9244 are exactly identical! WARNING: Sequences tr_G3UNX7_G3UNX7_MELGA_9103 and tr_A0A1V4KUZ7_A0A1V4KUZ7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2J8MY57_A0A2J8MY57_PANTR_9598 and tr_A0A2R9BJ01_A0A2R9BJ01_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QZ89_H2QZ89_PANTR_9598 and sp_Q9UN88_GBRT_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QZ89_H2QZ89_PANTR_9598 and tr_A0A2R9ALH2_A0A2R9ALH2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7EBG0_F7EBG0_MONDO_13616 and tr_G3VMU6_G3VMU6_SARHA_9305 are exactly identical! WARNING: Sequences sp_P15431_GBRB1_RAT_10116 and tr_A0A1U7R4F3_A0A1U7R4F3_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A3B5Q7B3_A0A3B5Q7B3_XIPMA_8083 and tr_A0A096MF96_A0A096MF96_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZRW3_M3ZRW3_XIPMA_8083 and tr_A0A087YMJ2_A0A087YMJ2_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A460_M4A460_XIPMA_8083 and tr_A0A087XTU4_A0A087XTU4_POEFO_48698 are exactly identical! WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A0D9R0Z5_A0A0D9R0Z5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K5NKY9_A0A2K5NKY9_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K6BW08_A0A2K6BW08_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6YLK3_F6YLK3_MACMU_9544 and tr_A0A2K5YI30_A0A2K5YI30_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2I3MM58_A0A2I3MM58_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2K5MKL8_A0A2K5MKL8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6ZKJ4_F6ZKJ4_MACMU_9544 and tr_A0A2K6CDS1_A0A2K6CDS1_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7P5I7_G7P5I7_MACFA_9541 and tr_A0A2K6BII0_A0A2K6BII0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7P6V7_G7P6V7_MACFA_9541 and tr_A0A0D9RC27_A0A0D9RC27_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7P6V7_G7P6V7_MACFA_9541 and tr_A0A2K6E235_A0A2K6E235_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7Q1Y1_G7Q1Y1_MACFA_9541 and tr_A0A096NQE6_A0A096NQE6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7Q1Y1_G7Q1Y1_MACFA_9541 and tr_A0A2K6CCV2_A0A2K6CCV2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MTC5_A0A096MTC5_PAPAN_9555 and tr_A0A0D9RX39_A0A0D9RX39_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MTC5_A0A096MTC5_PAPAN_9555 and tr_A0A2K5M2W3_A0A2K5M2W3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151NMP9_A0A151NMP9_ALLMI_8496 and tr_A0A1U7RXI3_A0A1U7RXI3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A087QUI7_A0A087QUI7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A093HH60_A0A093HH60_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A091XBN8_A0A091XBN8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A099ZCE5_A0A099ZCE5_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A091FNB8_A0A091FNB8_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VA25_A0A091VA25_NIPNI_128390 and tr_A0A0A0AQ55_A0A0A0AQ55_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091W0Y3_A0A091W0Y3_NIPNI_128390 and tr_A0A093JGP3_A0A093JGP3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A2I0M4S5_A0A2I0M4S5_COLLI_8932 and tr_A0A1V4KYT3_A0A1V4KYT3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3R4Z7_A0A1S3R4Z7_SALSA_8030 and tr_A0A060VT12_A0A060VT12_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0RVV2_A0A2D0RVV2_ICTPU_7998 and tr_A0A2D0RWR2_A0A2D0RWR2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5MZZ4_A0A2K5MZZ4_CERAT_9531 and tr_A0A2K5XI67_A0A2K5XI67_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4C636_A0A2U4C636_TURTR_9739 and tr_A0A2Y9PZG3_A0A2Y9PZG3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C636_A0A2U4C636_TURTR_9739 and tr_A0A2Y9RZ34_A0A2Y9RZ34_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4C636_A0A2U4C636_TURTR_9739 and tr_A0A383Z8H0_A0A383Z8H0_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3WY31_A0A2U3WY31_ODORO_9708 and tr_A0A2U3XA02_A0A2U3XA02_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9MNI4_A0A2Y9MNI4_DELLE_9749 and tr_A0A2Y9THJ9_A0A2Y9THJ9_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 97 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.reduced.phy Alignment comprises 1 partitions and 473 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 473 Gaps: 14.30 % Invariant sites: 1.48 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/3_mltree/P28472.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 119 / 9520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -102189.717491 [00:00:00 -102189.717491] Initial branch length optimization [00:00:01 -99355.433235] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -98978.189179 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.199597,0.185820) (0.238099,0.225913) (0.306246,0.817839) (0.256058,2.572311) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/P28472/4_raxmlng_ancestral/P28472.raxml.log Analysis started: 04-Jun-2021 14:16:07 / finished: 04-Jun-2021 14:16:54 Elapsed time: 46.591 seconds