RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:05:50 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/2_msa/P28360_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/3_mltree/P28360.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646350 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/2_msa/P28360_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 303 sites WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and sp_P20009_DLL_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B4IH92_B4IH92_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QCK9_B4QCK9_DROSI_7240 and tr_B3MC35_B3MC35_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4R049_B4R049_DROSI_7240 and sp_Q03372_HMSH_DROME_7227 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A1V4KUF6_A0A1V4KUF6_PATFA_372326 are exactly identical! WARNING: Sequences sp_P28362_MSX2_CHICK_9031 and tr_A0A226PMP2_A0A226PMP2_COLVI_9014 are exactly identical! WARNING: Sequences sp_P70396_DLX5_MOUSE_10090 and sp_P50575_DLX5_RAT_10116 are exactly identical! WARNING: Sequences sp_P70397_DLX6_MOUSE_10090 and tr_A0A096MIY0_A0A096MIY0_RAT_10116 are exactly identical! WARNING: Sequences sp_P70397_DLX6_MOUSE_10090 and tr_I3MT88_I3MT88_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2I3G534_A0A2I3G534_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_H2P7U1_H2P7U1_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_E2RFM6_E2RFM6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_H2QZL8_H2QZL8_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_F6QWX6_F6QWX6_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_H0X5R4_H0X5R4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and sp_P56177_DLX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_F1S083_F1S083_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_G7PKU0_G7PKU0_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A096NZJ4_A0A096NZJ4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A0D9RQK0_A0A0D9RQK0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A1U7U9J6_A0A1U7U9J6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2K5MPZ0_A0A2K5MPZ0_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2K6CP78_A0A2K6CP78_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2K5YND2_A0A2K5YND2_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2R9AKI2_A0A2R9AKI2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2U3WG86_A0A2U3WG86_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2U3XK47_A0A2U3XK47_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2Y9JAC1_A0A2Y9JAC1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2Y9N9G8_A0A2Y9N9G8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A2Y9FI14_A0A2Y9FI14_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XP33_M3XP33_MUSPF_9669 and tr_A0A384A7R3_A0A384A7R3_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XQZ9_M3XQZ9_MUSPF_9669 and tr_G3TMF1_G3TMF1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XQZ9_M3XQZ9_MUSPF_9669 and tr_A0A2Y9JHN2_A0A2Y9JHN2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMM2_M3YMM2_MUSPF_9669 and tr_A0A2Y9IPQ5_A0A2Y9IPQ5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3H1A6_G3H1A6_CRIGR_10029 and tr_A0A1U7Q3P7_A0A1U7Q3P7_MESAU_10036 are exactly identical! WARNING: Sequences sp_A1YF16_MSX2_GORGO_9595 and sp_P35548_MSX2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_A1YF16_MSX2_GORGO_9595 and sp_A1YG93_MSX2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QP29_G3QP29_GORGO_9595 and tr_H2PMV1_H2PMV1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QP29_G3QP29_GORGO_9595 and tr_H2QUZ2_H2QUZ2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QP29_G3QP29_GORGO_9595 and sp_P56178_DLX5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QP29_G3QP29_GORGO_9595 and tr_A0A0D9RKQ7_A0A0D9RKQ7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QP29_G3QP29_GORGO_9595 and tr_A0A2R9ALQ5_A0A2R9ALQ5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QRY5_G3QRY5_GORGO_9595 and tr_F7AA25_F7AA25_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NB94_H2NB94_PONAB_9601 and tr_F7HMD3_F7HMD3_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2NVL7_H2NVL7_PONAB_9601 and sp_Q92988_DLX4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NVL7_H2NVL7_PONAB_9601 and tr_A0A096P462_A0A096P462_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2NVL7_H2NVL7_PONAB_9601 and tr_A0A0D9QYS4_A0A0D9QYS4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2NVL7_H2NVL7_PONAB_9601 and tr_A0A2K5MP13_A0A2K5MP13_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NVL7_H2NVL7_PONAB_9601 and tr_A0A2K5Y6R4_A0A2K5Y6R4_MANLE_9568 are exactly identical! WARNING: Sequences tr_B5DKY5_B5DKY5_DROPS_46245 and tr_B4HBI8_B4HBI8_DROPE_7234 are exactly identical! WARNING: Sequences sp_Q2VL88_MSX1_PANTR_9598 and sp_P28360_MSX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F7BRI6_F7BRI6_MONDO_13616 and tr_G3WVJ1_G3WVJ1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7DY45_F7DY45_HORSE_9796 and tr_L5KLJ7_L5KLJ7_PTEAL_9402 are exactly identical! WARNING: Sequences tr_F7DY45_F7DY45_HORSE_9796 and tr_A0A2I2UAL0_A0A2I2UAL0_FELCA_9685 are exactly identical! WARNING: Sequences tr_F7DY45_F7DY45_HORSE_9796 and tr_A0A2U3WMJ8_A0A2U3WMJ8_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A3B5Q3L0_A0A3B5Q3L0_XIPMA_8083 and tr_A0A096LW83_A0A096LW83_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QMP6_A0A3B5QMP6_XIPMA_8083 and tr_A0A087Y2Q2_A0A087Y2Q2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NGA7_A0A158NGA7_ATTCE_12957 and tr_A0A195B933_A0A195B933_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A286XFM2_A0A286XFM2_CAVPO_10141 and tr_G5ANG1_G5ANG1_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A286XFM2_A0A286XFM2_CAVPO_10141 and tr_A0A091DI71_A0A091DI71_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P56179_DLX6_HUMAN_9606 and tr_A0A0D9RKQ0_A0A0D9RKQ0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5QHR2_A0A1D5QHR2_MACMU_9544 and tr_A0A2I3NDA3_A0A2I3NDA3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QHR2_A0A1D5QHR2_MACMU_9544 and tr_A0A2K5XS23_A0A2K5XS23_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HNC4_F7HNC4_MACMU_9544 and tr_A0A2K6BIL0_A0A2K6BIL0_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q2VL87_MSX1_MACMU_9544 and tr_A0A2K5NAV1_A0A2K5NAV1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q2VL87_MSX1_MACMU_9544 and tr_A0A2K6C161_A0A2K6C161_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0ZDG4_H0ZDG4_TAEGU_59729 and tr_U3I3X1_U3I3X1_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0ZDG4_H0ZDG4_TAEGU_59729 and tr_A0A093SWH4_A0A093SWH4_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZDG4_H0ZDG4_TAEGU_59729 and tr_A0A1V4K6J4_A0A1V4K6J4_PATFA_372326 are exactly identical! WARNING: Sequences tr_F4W5V4_F4W5V4_ACREC_103372 and tr_A0A151XI79_A0A151XI79_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4WP40_F4WP40_ACREC_103372 and tr_A0A195E6A6_A0A195E6A6_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A1B8Y7E5_A0A1B8Y7E5_XENTR_8364 and tr_Q6GLH9_Q6GLH9_XENTR_8364 are exactly identical! WARNING: Sequences tr_E3MJQ2_E3MJQ2_CAERE_31234 and tr_A0A261CMB1_A0A261CMB1_9PELO_1503980 are exactly identical! WARNING: Sequences tr_D2H5G1_D2H5G1_AILME_9646 and tr_A0A2I2UYT3_A0A2I2UYT3_FELCA_9685 are exactly identical! WARNING: Sequences tr_D2H5G1_D2H5G1_AILME_9646 and tr_A0A2U3WYK8_A0A2U3WYK8_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2H5G1_D2H5G1_AILME_9646 and tr_A0A2U3Z8Q0_A0A2U3Z8Q0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G7P1B2_G7P1B2_MACFA_9541 and tr_A0A096MVX4_A0A096MVX4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7P1B2_G7P1B2_MACFA_9541 and tr_A0A2K6AZP3_A0A2K6AZP3_MACNE_9545 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_U3J9H5_U3J9H5_ANAPL_8839 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A091F327_A0A091F327_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A093Q207_A0A093Q207_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A091V3Z1_A0A091V3Z1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A087RFR3_A0A087RFR3_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A093JQM7_A0A093JQM7_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A099ZAA7_A0A099ZAA7_TINGU_94827 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A091FYB9_A0A091FYB9_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A0A0A0X0_A0A0A0A0X0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3K6P7_U3K6P7_FICAL_59894 and tr_A0A091I107_A0A091I107_CALAN_9244 are exactly identical! WARNING: Sequences tr_U3I1G2_U3I1G2_ANAPL_8839 and tr_A0A091EEY5_A0A091EEY5_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3I1G2_U3I1G2_ANAPL_8839 and tr_A0A091VMG2_A0A091VMG2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A2I3MPT1_A0A2I3MPT1_PAPAN_9555 and tr_A0A2K5MUH9_A0A2K5MUH9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MPT1_A0A2I3MPT1_PAPAN_9555 and tr_A0A2K6C3I4_A0A2K6C3I4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RAW3_A0A0D9RAW3_CHLSB_60711 and tr_A0A2K5L3T2_A0A2K5L3T2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RAW3_A0A0D9RAW3_CHLSB_60711 and tr_A0A2K6CNH2_A0A2K6CNH2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RAW3_A0A0D9RAW3_CHLSB_60711 and tr_A0A2K5YX74_A0A2K5YX74_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A091VNU8_A0A091VNU8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A087REN5_A0A087REN5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A091WWZ4_A0A091WWZ4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A099ZCY5_A0A099ZCY5_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A0A0A8L7_A0A0A0A8L7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A093GJR8_A0A093GJR8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A093QGA3_A0A093QGA3_9PASS_328815 and tr_A0A091IAY6_A0A091IAY6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A0V1CQN7_A0A0V1CQN7_TRIBR_45882 and tr_A0A0V1D3M1_A0A0V1D3M1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V1D4Q6_A0A0V1D4Q6_TRIBR_45882 and tr_A0A0V1LGM3_A0A0V1LGM3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D4Q6_A0A0V1D4Q6_TRIBR_45882 and tr_A0A0V1MES9_A0A0V1MES9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0VKK0_A0A0V0VKK0_9BILA_181606 and tr_A0A0V0TYQ3_A0A0V0TYQ3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3Q3G5_A0A1S3Q3G5_SALSA_8030 and tr_A0A060XQS4_A0A060XQS4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NE55_A0A226NE55_CALSU_9009 and tr_A0A226PEI4_A0A226PEI4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4C8E7_A0A2U4C8E7_TURTR_9739 and tr_A0A2Y9PV86_A0A2Y9PV86_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C8E7_A0A2U4C8E7_TURTR_9739 and tr_A0A2Y9EW31_A0A2Y9EW31_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9M8P0_A0A2Y9M8P0_DELLE_9749 and tr_A0A2Y9TAA3_A0A2Y9TAA3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9M8P0_A0A2Y9M8P0_DELLE_9749 and tr_A0A383ZNJ6_A0A383ZNJ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9PFK2_A0A2Y9PFK2_DELLE_9749 and tr_A0A2Y9F6U1_A0A2Y9F6U1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PFK2_A0A2Y9PFK2_DELLE_9749 and tr_A0A383YPY9_A0A383YPY9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9FQE7_A0A2Y9FQE7_PHYCD_9755 and tr_A0A383ZN06_A0A383ZN06_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 115 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.reduced.phy Alignment comprises 1 partitions and 303 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 303 Gaps: 42.27 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/3_mltree/P28360.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 76 / 6080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -146962.527604 [00:00:00 -146962.527604] Initial branch length optimization [00:00:01 -97063.974683] Model parameter optimization (eps = 0.100000) [00:00:39] Tree #1, final logLikelihood: -96943.918933 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.114379,0.094490) (0.119325,0.191386) (0.195269,0.570662) (0.571028,1.497165) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/P28360/4_raxmlng_ancestral/P28360.raxml.log Analysis started: 02-Jun-2021 18:05:50 / finished: 02-Jun-2021 18:06:32 Elapsed time: 42.897 seconds Consumed energy: 2.915 Wh