RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 01-Jul-2021 01:57:24 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/2_msa/P27986_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/2_msa/P27986_trimmed_msa.fasta [00:00:00] Loaded alignment with 983 taxa and 37 sites WARNING: Sequences tr_B4Q624_B4Q624_DROSI_7240 and tr_Q7KTZ2_Q7KTZ2_DROME_7227 are exactly identical! WARNING: Sequences tr_B4Q624_B4Q624_DROSI_7240 and tr_B4ICV4_B4ICV4_DROSE_7238 are exactly identical! WARNING: Sequences tr_E9HA70_E9HA70_DAPPU_6669 and tr_A0A164U5D2_A0A164U5D2_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2A8N9_E2A8N9_CAMFO_104421 and tr_A0A195CJY8_A0A195CJY8_9HYME_456900 are exactly identical! WARNING: Sequences tr_E2A9V3_E2A9V3_CAMFO_104421 and tr_E2BKI3_E2BKI3_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2A9V3_E2A9V3_CAMFO_104421 and tr_A0A026WWH2_A0A026WWH2_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2A9V3_E2A9V3_CAMFO_104421 and tr_A0A151X6U8_A0A151X6U8_9HYME_64791 are exactly identical! WARNING: Sequences tr_B0S6V7_B0S6V7_DANRE_7955 and tr_H3B0Q5_H3B0Q5_LATCH_7897 are exactly identical! WARNING: Sequences tr_B0S6V7_B0S6V7_DANRE_7955 and tr_W5MWX5_W5MWX5_LEPOC_7918 are exactly identical! WARNING: Sequences tr_B0S6V7_B0S6V7_DANRE_7955 and tr_A0A2D0QEM4_A0A2D0QEM4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_E7F3F0_E7F3F0_DANRE_7955 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_W5L610_W5L610_ASTMX_7994 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_W5NCT8_W5NCT8_LEPOC_7918 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_A0A0P7UZA1_A0A0P7UZA1_9TELE_113540 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_A0A060YSE1_A0A060YSE1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_E7EZG2_E7EZG2_DANRE_7955 and tr_A0A060ZFK7_A0A060ZFK7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_E7F065_E7F065_DANRE_7955 and tr_A0A3B1JDC1_A0A3B1JDC1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and sp_Q8C170_MYO9A_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G1RU69_G1RU69_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G1P6C0_G1P6C0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G3H3Q5_G3H3Q5_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G3RFQ2_G3RFQ2_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_H2NNN3_H2NNN3_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G1MS32_G1MS32_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G1TRG0_G1TRG0_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_E2RNI0_E2RNI0_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_K7DAA9_K7DAA9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_F7DY49_F7DY49_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_F6W0M8_F6W0M8_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_F6WJE4_F6WJE4_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_W5QC23_W5QC23_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and sp_Q9Z1N3_MYO9A_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_I3MKR9_I3MKR9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_H0WTJ1_H0WTJ1_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and sp_B2RTY4_MYO9A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_F6SBJ8_F6SBJ8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G5C6U1_G5C6U1_HETGA_10181 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_K7FGF5_K7FGF5_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G3TI66_G3TI66_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_H0Z228_H0Z228_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_F7HND0_F7HND0_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A287A2D8_A0A287A2D8_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_H3ALF2_H3ALF2_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G7P913_G7P913_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_G3MY02_G3MY02_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_L5JZ66_L5JZ66_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_M3XDX8_M3XDX8_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_U3K505_U3K505_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_U3I3Y9_U3I3Y9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A096NMM0_A0A096NMM0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091E3T0_A0A091E3T0_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A0D9RMQ4_A0A0D9RMQ4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A151ML75_A0A151ML75_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A0Q3LWZ5_A0A0Q3LWZ5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091JJT8_A0A091JJT8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091VHS5_A0A091VHS5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A087R1D4_A0A087R1D4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091W7T8_A0A091W7T8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091H4A2_A0A091H4A2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A0A0A5X4_A0A0A0A5X4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2I0M6H9_A0A2I0M6H9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A093G3J8_A0A093G3J8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A091HG66_A0A091HG66_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A1S3WVZ3_A0A1S3WVZ3_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A1S3EUC0_A0A1S3EUC0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A1U7U2X2_A0A1U7U2X2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A1U8DGR7_A0A1U8DGR7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A1V4JD27_A0A1V4JD27_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A218UYF2_A0A218UYF2_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2K5P5D0_A0A2K5P5D0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2K6B7D0_A0A2K6B7D0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2K5XPJ5_A0A2K5XPJ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2R9BBY5_A0A2R9BBY5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2U4CGZ3_A0A2U4CGZ3_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2U3X3W4_A0A2U3X3W4_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2Y9R1K9_A0A2Y9R1K9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2Y9K3E7_A0A2Y9K3E7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2Y9NKL6_A0A2Y9NKL6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A2Y9T291_A0A2Y9T291_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A384DI72_A0A384DI72_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5P9R8_A0A1D5P9R8_CHICK_9031 and tr_A0A384BDQ6_A0A384BDQ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and sp_P26450_P85A_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_M3YTF0_M3YTF0_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2I3GKV4_A0A2I3GKV4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G1PSA4_G1PSA4_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G3H4N4_G3H4N4_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2I2ZTD7_A0A2I2ZTD7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_H2PFQ8_H2PFQ8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and sp_Q5R685_P85A_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G1KSH1_G1KSH1_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G1SN87_G1SN87_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_F1Q2Q9_F1Q2Q9_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2I3SIY1_A0A2I3SIY1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_F6TD14_F6TD14_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_F7CEQ6_F7CEQ6_HORSE_9796 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_W5P790_W5P790_SHEEP_9940 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and sp_Q63787_P85A_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A287DCB8_A0A287DCB8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_H0XC81_H0XC81_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_H0VAY4_H0VAY4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and sp_P27986_P85A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_F7BZL6_F7BZL6_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_K7FV27_K7FV27_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G3TKF7_G3TKF7_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G3W1N3_G3W1N3_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_H0YXT8_H0YXT8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_U3ERL3_U3ERL3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_I3LLB7_I3LLB7_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G1L8K7_G1L8K7_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_G7P7N1_G7P7N1_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and sp_P23727_P85A_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_L5KID2_L5KID2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_M3WED2_M3WED2_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_U3K5G8_U3K5G8_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_U3IAT4_U3IAT4_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A096MNU6_A0A096MNU6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091DY72_A0A091DY72_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A0D9RTM6_A0A0D9RTM6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A151MXN9_A0A151MXN9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A0Q3LZU6_A0A0Q3LZU6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091E7S5_A0A091E7S5_CORBR_85066 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091J249_A0A091J249_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A093PZ18_A0A093PZ18_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A087QP23_A0A087QP23_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A093KDP3_A0A093KDP3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091V8Y0_A0A091V8Y0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A099ZKX1_A0A099ZKX1_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A099ZL81_A0A099ZL81_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091GG50_A0A091GG50_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A0A0AFE6_A0A0A0AFE6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2I0M199_A0A2I0M199_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A093H373_A0A093H373_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A091IHZ5_A0A091IHZ5_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A1S2ZRS7_A0A1S2ZRS7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A1S3F3Z7_A0A1S3F3Z7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A3Q0E2I1_A0A3Q0E2I1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A1U7RNX9_A0A1U7RNX9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A1U7Q814_A0A1U7Q814_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A1V4L1I4_A0A1V4L1I4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A218VA22_A0A218VA22_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A226N6Y2_A0A226N6Y2_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A226PMZ4_A0A226PMZ4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2K5MRP7_A0A2K5MRP7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2K6D4C7_A0A2K6D4C7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2K6A179_A0A2K6A179_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2R9C9Z1_A0A2R9C9Z1_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2U4AWZ8_A0A2U4AWZ8_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2U3X1Z3_A0A2U3X1Z3_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2U3Z893_A0A2U3Z893_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2Y9DH33_A0A2Y9DH33_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2Y9KPA9_A0A2Y9KPA9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2Y9Q8T5_A0A2Y9Q8T5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A2Y9T623_A0A2Y9T623_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A384C402_A0A384C402_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5PUK7_A0A1D5PUK7_CHICK_9031 and tr_A0A383ZMD9_A0A383ZMD9_BALAS_310752 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_H0YQ56_H0YQ56_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_U3KHD9_U3KHD9_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_U3IW86_U3IW86_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A151N8Y8_A0A151N8Y8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A0Q3PN26_A0A0Q3PN26_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A091F766_A0A091F766_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A091IVV2_A0A091IVV2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A093PCU9_A0A093PCU9_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A091VQ36_A0A091VQ36_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A087R309_A0A087R309_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A093HT35_A0A093HT35_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A091G6N4_A0A091G6N4_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A0A0A4Z4_A0A0A0A4Z4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A2I0LQ03_A0A2I0LQ03_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A093IMA4_A0A093IMA4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A091IG19_A0A091IG19_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A1U7SBH5_A0A1U7SBH5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A1V4KQK9_A0A1V4KQK9_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A218UCN6_A0A218UCN6_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A226MM37_A0A226MM37_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C2C5_E1C2C5_CHICK_9031 and tr_A0A226P067_A0A226P067_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G3II55_G3II55_CRIGR_10029 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G3QTU7_G3QTU7_GORGO_9595 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_H2PDT8_H2PDT8_PONAB_9601 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G1N778_G1N778_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G1SZR2_G1SZR2_RABIT_9986 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_F6QLW2_F6QLW2_HORSE_9796 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_W5P0Y4_W5P0Y4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and sp_Q5U2Z7_RHG24_RAT_10116 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and sp_Q8N264_RHG24_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_F6UV94_F6UV94_MACMU_9544 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G3T8R2_G3T8R2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_F6UMK3_F6UMK3_CALJA_9483 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_F1RW15_F1RW15_PIG_9823 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_G1LA36_G1LA36_AILME_9646 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_F1MHI2_F1MHI2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_L5KZI3_L5KZI3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A337SUL6_A0A337SUL6_FELCA_9685 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_U3JSS0_U3JSS0_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_U3IEY8_U3IEY8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A096MUE0_A0A096MUE0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A0D9QWF1_A0A0D9QWF1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A0Q3R6H7_A0A0Q3R6H7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A091WYD9_A0A091WYD9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A091WAQ7_A0A091WAQ7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A099YXB0_A0A099YXB0_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2I0MGR2_A0A2I0MGR2_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A1S2ZV67_A0A1S2ZV67_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A1V4JUY3_A0A1V4JUY3_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A226NEI8_A0A226NEI8_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A226PVG5_A0A226PVG5_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2K5MWD6_A0A2K5MWD6_CERAT_9531 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2K6AR12_A0A2K6AR12_MACNE_9545 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2K5ZTC5_A0A2K5ZTC5_MANLE_9568 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2U4AN26_A0A2U4AN26_TURTR_9739 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2U3VBD0_A0A2U3VBD0_ODORO_9708 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2U3XE97_A0A2U3XE97_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2Y9EC73_A0A2Y9EC73_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2Y9M8J6_A0A2Y9M8J6_DELLE_9749 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A2Y9S5T3_A0A2Y9S5T3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A384DBH2_A0A384DBH2_URSMA_29073 are exactly identical! WARNING: Sequences tr_E1C6N8_E1C6N8_CHICK_9031 and tr_A0A383ZQN9_A0A383ZQN9_BALAS_310752 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_M3YNJ8_M3YNJ8_MUSPF_9669 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G3RTG1_G3RTG1_GORGO_9595 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_H2N7J9_H2N7J9_PONAB_9601 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G1NDS2_G1NDS2_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G1TGH6_G1TGH6_RABIT_9986 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_E2RPB0_E2RPB0_CANLF_9615 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2I3RH39_A0A2I3RH39_PANTR_9598 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A287D6U2_A0A287D6U2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_H0WU85_H0WU85_OTOGA_30611 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A286XX27_A0A286XX27_CAVPO_10141 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and sp_Q92569_P55G_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G7MGQ5_G7MGQ5_MACMU_9544 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G5AX46_G5AX46_HETGA_10181 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_K7FY43_K7FY43_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G3U3I2_G3U3I2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_F7EAE6_F7EAE6_CALJA_9483 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_F1S3V4_F1S3V4_PIG_9823 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G1M5C7_G1M5C7_AILME_9646 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_G8F2B7_G8F2B7_MACFA_9541 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_L5K6I9_L5K6I9_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A337S8Q9_A0A337S8Q9_FELCA_9685 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_U3K4G9_U3K4G9_FICAL_59894 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_U3IGX0_U3IGX0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A096MR68_A0A096MR68_PAPAN_9555 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091CRN1_A0A091CRN1_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A0D9S7F0_A0A0D9S7F0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A0Q3SZF7_A0A0Q3SZF7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091F2Z0_A0A091F2Z0_CORBR_85066 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091J4V1_A0A091J4V1_EGRGA_188379 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A093SEZ8_A0A093SEZ8_9PASS_328815 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091VBV6_A0A091VBV6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A087RHM2_A0A087RHM2_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A093HS44_A0A093HS44_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A099ZM41_A0A099ZM41_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091G4V0_A0A091G4V0_9AVES_55661 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A0A0AJ03_A0A0A0AJ03_CHAVO_50402 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2I0LYZ1_A0A2I0LYZ1_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A093GE76_A0A093GE76_DRYPU_118200 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A091HTT5_A0A091HTT5_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A1S2ZM01_A0A1S2ZM01_ERIEU_9365 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A1S3F702_A0A1S3F702_DIPOR_10020 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A3Q0EIG4_A0A3Q0EIG4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A3Q0GVX3_A0A3Q0GVX3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A1V4JWZ3_A0A1V4JWZ3_PATFA_372326 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A218VG26_A0A218VG26_9PASE_299123 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A226NMJ1_A0A226NMJ1_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A226PHA1_A0A226PHA1_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2K5MQ86_A0A2K5MQ86_CERAT_9531 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2K6DRN4_A0A2K6DRN4_MACNE_9545 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2K5ZT21_A0A2K5ZT21_MANLE_9568 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2R8ZHS7_A0A2R8ZHS7_PANPA_9597 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2U3VYN3_A0A2U3VYN3_ODORO_9708 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2U3XCA0_A0A2U3XCA0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2Y9DBZ1_A0A2Y9DBZ1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A2Y9IWM8_A0A2Y9IWM8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E1C8M6_E1C8M6_CHICK_9031 and tr_A0A384CRN7_A0A384CRN7_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_H0ZCU6_H0ZCU6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_U3JYF8_U3JYF8_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_U3J9Y9_U3J9Y9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A151MKW9_A0A151MKW9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A091EC64_A0A091EC64_CORBR_85066 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A091JDG5_A0A091JDG5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A093QAC2_A0A093QAC2_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A091VNM5_A0A091VNM5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A087QZ02_A0A087QZ02_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A091V420_A0A091V420_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A099ZHM8_A0A099ZHM8_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A091FKL0_A0A091FKL0_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A0A0AT71_A0A0A0AT71_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A3Q0GYH3_A0A3Q0GYH3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A218UWJ5_A0A218UWJ5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A226N1A6_A0A226N1A6_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_G1NFQ3_G1NFQ3_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_U3I166_U3I166_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A0Q3P050_A0A0Q3P050_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A091W2L8_A0A091W2L8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A087RBY7_A0A087RBY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A093HQ25_A0A093HQ25_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A091XQ08_A0A091XQ08_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A091GMV4_A0A091GMV4_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A0A0AB81_A0A0A0AB81_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A093GWN9_A0A093GWN9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A091IGD8_A0A091IGD8_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A3Q0GVW1_A0A3Q0GVW1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A1V4KN15_A0A1V4KN15_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q8AYA6_Q8AYA6_CHICK_9031 and tr_A0A226MNK9_A0A226MNK9_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1L1ST33_A0A1L1ST33_MOUSE_10090 and sp_Q64143_P55G_MOUSE_10090 are exactly identical! WARNING: Sequences sp_O08908_P85B_MOUSE_10090 and tr_G3H4B1_G3H4B1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O08908_P85B_MOUSE_10090 and sp_Q63788_P85B_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2I2ZMD1_A0A2I2ZMD1_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_G1SCR8_G1SCR8_RABIT_9986 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2I3TLP8_A0A2I3TLP8_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_F1LWB1_F1LWB1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_H0UUG0_H0UUG0_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and sp_Q9UKW4_VAV3_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_F7BD31_F7BD31_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_G7NV42_G7NV42_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2I3MBF6_A0A2I3MBF6_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A091CX49_A0A091CX49_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A0D9S6L5_A0A0D9S6L5_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2K5KNR1_A0A2K5KNR1_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2K6BD32_A0A2K6BD32_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2K5Y133_A0A2K5Y133_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2R8ZV44_A0A2R8ZV44_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9R0C8_VAV3_MOUSE_10090 and tr_A0A2Y9S1M6_A0A2Y9S1M6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_F1PET4_F1PET4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_G1L2J5_G1L2J5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2U4A1N3_A0A2U4A1N3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2U3WB40_A0A2U3WB40_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2U3XYS9_A0A2U3XYS9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2Y9IT49_A0A2Y9IT49_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2Y9P3S9_A0A2Y9P3S9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A2Y9S9X6_A0A2Y9S9X6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A384D5U5_A0A384D5U5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XLZ0_M3XLZ0_MUSPF_9669 and tr_A0A383Z3A4_A0A383Z3A4_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_G1PSB1_G1PSB1_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_F6XNR1_F6XNR1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_W5Q2U4_W5Q2U4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and sp_Q7YRV6_SOCS2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_D2HHX8_D2HHX8_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and sp_Q861R0_SOCS2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_L5JVQ3_L5JVQ3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2I2V2S3_A0A2I2V2S3_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2U3V7D3_A0A2U3V7D3_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2U3ZFL8_A0A2U3ZFL8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2Y9IQ38_A0A2Y9IQ38_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2Y9LEZ1_A0A2Y9LEZ1_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A2Y9SYH4_A0A2Y9SYH4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A384BTK4_A0A384BTK4_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y7T0_M3Y7T0_MUSPF_9669 and tr_A0A383YT53_A0A383YT53_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_G1P1D0_G1P1D0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_E2RH85_E2RH85_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_I3LZG5_I3LZG5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_H0W027_H0W027_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_G3SM83_G3SM83_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_F1S916_F1S916_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_G1LX27_G1LX27_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and sp_P23726_P85B_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A337SCA8_A0A337SCA8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A091CT72_A0A091CT72_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A1S3ADG5_A0A1S3ADG5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A1S3G4N7_A0A1S3G4N7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2U3W8T2_A0A2U3W8T2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2U3YRY6_A0A2U3YRY6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2Y9E166_A0A2Y9E166_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2Y9IXT9_A0A2Y9IXT9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2Y9LXY5_A0A2Y9LXY5_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A2Y9TL49_A0A2Y9TL49_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YWA8_M3YWA8_MUSPF_9669 and tr_A0A384B7J3_A0A384B7J3_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_M4AW07_M4AW07_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_I3JYI4_I3JYI4_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_H2T2A6_H2T2A6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_A0A087X689_A0A087X689_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_A0A2I4CPJ8_A0A2I4CPJ8_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LBP9_H2LBP9_ORYLA_8090 and tr_A0A2U9CG28_A0A2U9CG28_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_M4AL25_M4AL25_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_I3J001_I3J001_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_H2TSE5_H2TSE5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_H3DNG4_H3DNG4_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_A0A2I4D189_A0A2I4D189_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2MSU3_H2MSU3_ORYLA_8090 and tr_A0A2U9BU54_A0A2U9BU54_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_G3R3V9_G3R3V9_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_A0A2J8XN60_A0A2J8XN60_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_H2Q6L9_H2Q6L9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_I3MJ91_I3MJ91_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_H0VBW0_H0VBW0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and sp_O14508_SOCS2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_G5B013_G5B013_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_F7IEW0_F7IEW0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_A0A1S3FP95_A0A1S3FP95_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_A0A1U7Q8V0_A0A1U7Q8V0_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_A0A2R9C5Q8_A0A2R9C5Q8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R144_G1R144_NOMLE_61853 and tr_A0A2Y9RIT8_A0A2Y9RIT8_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_A0A2I2Y5U1_A0A2I2Y5U1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_H2NY26_H2NY26_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_H2QFS6_H2QFS6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_H0WHZ3_H0WHZ3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and sp_O00459_P85B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_F7EP57_F7EP57_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_F6ZCI2_F6ZCI2_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_G8F4H6_G8F4H6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_A0A0A0MVM4_A0A0A0MVM4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_A0A0D9QZB1_A0A0D9QZB1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_A0A2K5XEI1_A0A2K5XEI1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R1V3_G1R1V3_NOMLE_61853 and tr_A0A2R8ZYB8_A0A2R8ZYB8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3GYN9_G3GYN9_CRIGR_10029 and tr_A0A3Q0CTK8_A0A3Q0CTK8_MESAU_10036 are exactly identical! WARNING: Sequences tr_G1KRT8_G1KRT8_ANOCA_28377 and tr_H3AGB3_H3AGB3_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q29NX3_Q29NX3_DROPS_46245 and tr_B4GJQ6_B4GJQ6_DROPE_7234 are exactly identical! WARNING: Sequences tr_F7EJL2_F7EJL2_MONDO_13616 and tr_G3WMA7_G3WMA7_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7EJL2_F7EJL2_MONDO_13616 and tr_A0A1S3GER1_A0A1S3GER1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F7BA56_F7BA56_HORSE_9796 and tr_A0A337SHK4_A0A337SHK4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F7BA56_F7BA56_HORSE_9796 and tr_A0A1S3A2I2_A0A1S3A2I2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_B0WWZ6_B0WWZ6_CULQU_7176 and tr_B0XFC9_B0XFC9_CULQU_7176 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and tr_F1MDQ5_F1MDQ5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and sp_O46404_P55G_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and tr_A0A2U4BK23_A0A2U4BK23_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and tr_A0A2Y9NAQ0_A0A2Y9NAQ0_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and tr_A0A2Y9FTY3_A0A2Y9FTY3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5NVV5_W5NVV5_SHEEP_9940 and tr_A0A383YPD9_A0A383YPD9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A286XMN5_A0A286XMN5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_F7GRE8_F7GRE8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_G1MB50_G1MB50_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A096MNH2_A0A096MNH2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A0D9RT13_A0A0D9RT13_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A2K5MCJ8_A0A2K5MCJ8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A2K5ZRB2_A0A2K5ZRB2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0G2K7N9_A0A0G2K7N9_RAT_10116 and tr_A0A2Y9DL70_A0A2Y9DL70_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A0H2UHH1_A0A0H2UHH1_RAT_10116 and sp_O88582_SOCS2_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A3B5R0C1_A0A3B5R0C1_XIPMA_8083 and tr_A0A087XWJ8_A0A087XWJ8_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJV4_M3ZJV4_XIPMA_8083 and tr_A0A087X335_A0A087X335_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJV4_M3ZJV4_XIPMA_8083 and tr_A0A096M0E5_A0A096M0E5_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZJV4_M3ZJV4_XIPMA_8083 and tr_A0A096MGV7_A0A096MGV7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZQI5_M3ZQI5_XIPMA_8083 and tr_A0A087XK30_A0A087XK30_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A4X0_M4A4X0_XIPMA_8083 and tr_A0A096M228_A0A096M228_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4A854_M4A854_XIPMA_8083 and tr_I3JEA8_I3JEA8_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4ACZ9_M4ACZ9_XIPMA_8083 and tr_I3K4R1_I3K4R1_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4ACZ9_M4ACZ9_XIPMA_8083 and tr_H2URU3_H2URU3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_M4ACZ9_M4ACZ9_XIPMA_8083 and tr_A0A087XK11_A0A087XK11_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AHI1_M4AHI1_XIPMA_8083 and tr_I3JWC6_I3JWC6_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4AHI1_M4AHI1_XIPMA_8083 and tr_A0A096M7N6_A0A096M7N6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AHI1_M4AHI1_XIPMA_8083 and tr_A0A1S3LWS3_A0A1S3LWS3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A087ZTP6_A0A087ZTP6_APIME_7460 and tr_A0A2A3EMQ0_A0A2A3EMQ0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A087ZTP6_A0A087ZTP6_APIME_7460 and tr_A0A2A3ENF5_A0A2A3ENF5_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_F4X769_F4X769_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_A0A151WG68_A0A151WG68_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_A0A195DK83_A0A195DK83_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_A0A195B1I2_A0A195B1I2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_A0A195FHQ3_A0A195FHQ3_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158ND87_A0A158ND87_ATTCE_12957 and tr_A0A151IPI1_A0A151IPI1_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NG70_A0A158NG70_ATTCE_12957 and tr_F4WNE1_F4WNE1_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NG70_A0A158NG70_ATTCE_12957 and tr_A0A195E871_A0A195E871_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NG70_A0A158NG70_ATTCE_12957 and tr_A0A195B768_A0A195B768_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NG70_A0A158NG70_ATTCE_12957 and tr_A0A195FG48_A0A195FG48_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NHS5_A0A158NHS5_ATTCE_12957 and tr_A0A195AX45_A0A195AX45_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NHS5_A0A158NHS5_ATTCE_12957 and tr_A0A195FEN2_A0A195FEN2_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NJN6_A0A158NJN6_ATTCE_12957 and tr_F4X2C5_F4X2C5_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NJN6_A0A158NJN6_ATTCE_12957 and tr_A0A151X6I9_A0A151X6I9_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NJN6_A0A158NJN6_ATTCE_12957 and tr_A0A195EKI9_A0A195EKI9_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NJN6_A0A158NJN6_ATTCE_12957 and tr_A0A195BBL3_A0A195BBL3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NJN6_A0A158NJN6_ATTCE_12957 and tr_A0A195FNC5_A0A195FNC5_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_A0A3B1JSY9_A0A3B1JSY9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_A0A3B1K219_A0A3B1K219_ASTMX_7994 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_W5MEZ4_W5MEZ4_LEPOC_7918 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_A0A0P7VWB3_A0A0P7VWB3_9TELE_113540 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_A0A1S3P9M4_A0A1S3P9M4_SALSA_8030 are exactly identical! WARNING: Sequences tr_I3JM05_I3JM05_ORENI_8128 and tr_W5UQC2_W5UQC2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_I3KUR0_I3KUR0_ORENI_8128 and tr_H2V3W8_H2V3W8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_I3KUR0_I3KUR0_ORENI_8128 and tr_H3C6A9_H3C6A9_TETNG_99883 are exactly identical! WARNING: Sequences tr_I3KUR0_I3KUR0_ORENI_8128 and tr_G3NQA5_G3NQA5_GASAC_69293 are exactly identical! WARNING: Sequences tr_I3KUR0_I3KUR0_ORENI_8128 and tr_A0A2U9CL52_A0A2U9CL52_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H0WFR4_H0WFR4_OTOGA_30611 and tr_A0A1S3WBB7_A0A1S3WBB7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_H0XC60_H0XC60_OTOGA_30611 and tr_A0A093PH42_A0A093PH42_9PASS_328815 are exactly identical! WARNING: Sequences tr_H2TP05_H2TP05_TAKRU_31033 and tr_H3D0H0_H3D0H0_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0H5S3W2_A0A0H5S3W2_BRUMA_6279 and tr_A0A0N4TWF5_A0A0N4TWF5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5S3W2_A0A0H5S3W2_BRUMA_6279 and tr_A0A0R3S2T4_A0A0R3S2T4_9BILA_1147741 are exactly identical! WARNING: Sequences tr_A0A0H5S3W2_A0A0H5S3W2_BRUMA_6279 and tr_A0A1I7VI34_A0A1I7VI34_LOALO_7209 are exactly identical! WARNING: Sequences tr_A9LDS0_A9LDS0_GASAC_69293 and tr_H3AB71_H3AB71_LATCH_7897 are exactly identical! WARNING: Sequences tr_A9LDS0_A9LDS0_GASAC_69293 and tr_A0A2U9CXI8_A0A2U9CXI8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G3NW18_G3NW18_GASAC_69293 and tr_A0A2U9BUS4_A0A2U9BUS4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G3P9M8_G3P9M8_GASAC_69293 and tr_A0A2U9CJE4_A0A2U9CJE4_SCOMX_52904 are exactly identical! WARNING: Sequences tr_B2WUN6_B2WUN6_XENTR_8364 and tr_A0A1L8GYC1_A0A1L8GYC1_XENLA_8355 are exactly identical! WARNING: Sequences tr_B2WUN6_B2WUN6_XENTR_8364 and tr_Q5FWV5_Q5FWV5_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6Z0J4_F6Z0J4_XENTR_8364 and tr_Q6GQ43_Q6GQ43_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7AFM8_F7AFM8_XENTR_8364 and tr_A0A1L8GTB8_A0A1L8GTB8_XENLA_8355 are exactly identical! WARNING: Sequences tr_G7PJ23_G7PJ23_MACFA_9541 and tr_A0A2K6BC69_A0A2K6BC69_MACNE_9545 are exactly identical! WARNING: Sequences tr_T1KCY9_T1KCY9_TETUR_32264 and tr_T1KCZ2_T1KCZ2_TETUR_32264 are exactly identical! WARNING: Sequences tr_U3K831_U3K831_FICAL_59894 and tr_A0A093S1Q4_A0A093S1Q4_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3K831_U3K831_FICAL_59894 and tr_A0A218VAK1_A0A218VAK1_9PASE_299123 are exactly identical! WARNING: Sequences tr_V2XPN8_V2XPN8_MONRO_1381753 and tr_A0A0W0EV24_A0A0W0EV24_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W5KXH8_W5KXH8_ASTMX_7994 and tr_A0A0N8K206_A0A0N8K206_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A044TS35_A0A044TS35_ONCVO_6282 and tr_A0A182E0C8_A0A182E0C8_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067RUQ4_A0A067RUQ4_ZOONE_136037 and tr_A0A2J7QCW1_A0A2J7QCW1_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A096MLH8_A0A096MLH8_PAPAN_9555 and tr_A0A0D9QUN4_A0A0D9QUN4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MLH8_A0A096MLH8_PAPAN_9555 and tr_A0A2K5KR11_A0A2K5KR11_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MLH8_A0A096MLH8_PAPAN_9555 and tr_A0A2K5XTA1_A0A2K5XTA1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0P7WQH4_A0A0P7WQH4_9TELE_113540 and tr_A0A1S3R0Y4_A0A1S3R0Y4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0P7WQH4_A0A0P7WQH4_9TELE_113540 and tr_A0A060X7N1_A0A060X7N1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0L6U8E3_A0A0L6U8E3_9BASI_27349 and tr_A0A2N5UI77_A0A2N5UI77_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A194R1T3_A0A194R1T3_PAPMA_76193 and tr_A0A194PH65_A0A194PH65_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A087R3W6_A0A087R3W6_APTFO_9233 and tr_A0A218V2W7_A0A218V2W7_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V1D3K6_A0A0V1D3K6_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V0WHB3_A0A0V0WHB3_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V0VW36_A0A0V0VW36_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V1LHR5_A0A0V1LHR5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V0ZXL0_A0A0V0ZXL0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V1PI33_A0A0V1PI33_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SM73_A0A0V0SM73_9BILA_6336 and tr_A0A0V0UAE2_A0A0V0UAE2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0YF56_A0A0V0YF56_TRIPS_6337 and tr_A0A0V1N0B9_A0A0V1N0B9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0YF56_A0A0V0YF56_TRIPS_6337 and tr_A0A0V1HK68_A0A0V1HK68_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3HNM1_A0A1S3HNM1_LINUN_7574 and tr_A0A1S3HRF8_A0A1S3HRF8_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HNM1_A0A1S3HNM1_LINUN_7574 and tr_A0A1S3J6Y5_A0A1S3J6Y5_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3HNM1_A0A1S3HNM1_LINUN_7574 and tr_A0A2R2MJ12_A0A2R2MJ12_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3KYE7_A0A1S3KYE7_SALSA_8030 and tr_A0A1S3LPM2_A0A1S3LPM2_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3KYE7_A0A1S3KYE7_SALSA_8030 and tr_A0A060W0Z9_A0A060W0Z9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LZE8_A0A1S3LZE8_SALSA_8030 and tr_A0A1S3R4A8_A0A1S3R4A8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LZE8_A0A1S3LZE8_SALSA_8030 and tr_A0A060WWC9_A0A060WWC9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LZE8_A0A1S3LZE8_SALSA_8030 and tr_A0A060X2T3_A0A060X2T3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MNM5_A0A1S3MNM5_SALSA_8030 and tr_A0A060YF80_A0A060YF80_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PT14_A0A1S3PT14_SALSA_8030 and tr_A0A060XCC3_A0A060XCC3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RBT0_A0A1S3RBT0_SALSA_8030 and tr_A0A060W7W7_A0A060W7W7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0SCM0_A0A2D0SCM0_ICTPU_7998 and tr_A0A2D0SDD2_A0A2D0SDD2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SCM0_A0A2D0SCM0_ICTPU_7998 and tr_A0A2D0SDZ1_A0A2D0SDZ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T046_A0A2D0T046_ICTPU_7998 and tr_A0A2D0T0I2_A0A2D0T0I2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T046_A0A2D0T046_ICTPU_7998 and tr_W5UR97_W5UR97_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2J7PJJ9_A0A2J7PJJ9_9NEOP_105785 and tr_A0A2P8XEF6_A0A2P8XEF6_BLAGE_6973 are exactly identical! WARNING: Duplicate sequences found: 522 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.reduced.phy Alignment comprises 1 partitions and 37 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 37 / 37 Gaps: 3.93 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 983 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 37 / 2960 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -73837.419399] Initial branch length optimization [00:00:01 -55633.451198] Model parameter optimization (eps = 10.000000) [00:00:14 -55070.801431] AUTODETECT spr round 1 (radius: 5) [00:01:10 -35963.435087] AUTODETECT spr round 2 (radius: 10) [00:02:09 -26082.261348] AUTODETECT spr round 3 (radius: 15) [00:03:13 -21292.262726] AUTODETECT spr round 4 (radius: 20) [00:04:23 -18713.300997] AUTODETECT spr round 5 (radius: 25) [00:05:37 -16796.679184] SPR radius for FAST iterations: 25 (autodetect) [00:05:37 -16796.679184] Model parameter optimization (eps = 3.000000) [00:05:55 -16741.750701] FAST spr round 1 (radius: 25) [00:07:05 -13522.787679] FAST spr round 2 (radius: 25) [00:08:07 -13251.714026] FAST spr round 3 (radius: 25) [00:09:04 -13237.795066] FAST spr round 4 (radius: 25) [00:10:00 -13234.521519] FAST spr round 5 (radius: 25) [00:10:54 -13234.292977] FAST spr round 6 (radius: 25) [00:11:48 -13234.281822] Model parameter optimization (eps = 1.000000) [00:11:55 -13232.349806] SLOW spr round 1 (radius: 5) [00:12:50 -13210.780424] SLOW spr round 2 (radius: 5) [00:13:45 -13207.652602] SLOW spr round 3 (radius: 5) [00:14:40 -13207.649819] SLOW spr round 4 (radius: 10) [00:15:39 -13207.568600] SLOW spr round 5 (radius: 15) [00:16:47 -13189.158241] SLOW spr round 6 (radius: 5) [00:17:50 -13167.862076] SLOW spr round 7 (radius: 5) [00:18:47 -13167.096117] SLOW spr round 8 (radius: 5) [00:19:43 -13167.095983] SLOW spr round 9 (radius: 10) [00:20:42 -13164.500756] SLOW spr round 10 (radius: 5) [00:21:40 -13164.499898] SLOW spr round 11 (radius: 10) [00:22:39 -13164.499009] SLOW spr round 12 (radius: 15) [00:23:46 -13164.468162] SLOW spr round 13 (radius: 20) [00:25:00 -13155.303930] SLOW spr round 14 (radius: 5) [00:26:05 -13143.088018] SLOW spr round 15 (radius: 5) [00:27:04 -13143.086644] SLOW spr round 16 (radius: 10) [00:28:04 -13142.788554] SLOW spr round 17 (radius: 5) [00:29:03 -13142.788520] SLOW spr round 18 (radius: 10) [00:30:03 -13142.736702] SLOW spr round 19 (radius: 15) [00:31:08 -13142.278893] SLOW spr round 20 (radius: 5) [00:32:10 -13142.276517] SLOW spr round 21 (radius: 10) [00:33:10 -13142.275908] SLOW spr round 22 (radius: 15) [00:34:16 -13142.275743] SLOW spr round 23 (radius: 20) [00:35:28 -13142.275688] SLOW spr round 24 (radius: 25) [00:36:48 -13137.540104] SLOW spr round 25 (radius: 5) [00:37:51 -13137.539873] SLOW spr round 26 (radius: 10) [00:38:54 -13137.425013] SLOW spr round 27 (radius: 5) [00:39:53 -13137.424990] SLOW spr round 28 (radius: 10) [00:40:52 -13137.424979] SLOW spr round 29 (radius: 15) [00:41:57 -13137.424963] SLOW spr round 30 (radius: 20) [00:43:09 -13137.424942] SLOW spr round 31 (radius: 25) [00:44:27 -13137.424887] Model parameter optimization (eps = 0.100000) [00:44:32] ML tree search #1, logLikelihood: -13136.805290 [00:44:32 -73494.736347] Initial branch length optimization [00:44:33 -55348.210813] Model parameter optimization (eps = 10.000000) [00:44:50 -54806.177911] AUTODETECT spr round 1 (radius: 5) [00:45:46 -36777.001839] AUTODETECT spr round 2 (radius: 10) [00:46:43 -27487.439502] AUTODETECT spr round 3 (radius: 15) [00:47:44 -22260.640170] AUTODETECT spr round 4 (radius: 20) [00:48:52 -19751.679280] AUTODETECT spr round 5 (radius: 25) [00:50:02 -17971.172721] SPR radius for FAST iterations: 25 (autodetect) [00:50:02 -17971.172721] Model parameter optimization (eps = 3.000000) [00:50:12 -17914.962607] FAST spr round 1 (radius: 25) [00:51:19 -14608.859953] FAST spr round 2 (radius: 25) [00:52:19 -14263.823069] FAST spr round 3 (radius: 25) [00:53:17 -14044.726400] FAST spr round 4 (radius: 25) [00:54:15 -13933.078149] FAST spr round 5 (radius: 25) [00:55:12 -13877.748189] FAST spr round 6 (radius: 25) [00:56:08 -13875.830349] FAST spr round 7 (radius: 25) [00:57:03 -13874.881041] FAST spr round 8 (radius: 25) [00:57:59 -13874.880538] Model parameter optimization (eps = 1.000000) [00:58:03 -13874.255398] SLOW spr round 1 (radius: 5) [00:59:00 -13830.719707] SLOW spr round 2 (radius: 5) [00:59:57 -13822.390813] SLOW spr round 3 (radius: 5) [01:00:53 -13822.033042] SLOW spr round 4 (radius: 5) [01:01:48 -13822.031298] SLOW spr round 5 (radius: 10) [01:02:47 -13821.261676] SLOW spr round 6 (radius: 5) [01:03:48 -13821.036932] SLOW spr round 7 (radius: 5) [01:04:44 -13821.036682] SLOW spr round 8 (radius: 10) [01:05:43 -13820.047643] SLOW spr round 9 (radius: 5) [01:06:43 -13819.437570] SLOW spr round 10 (radius: 5) [01:07:40 -13819.437462] SLOW spr round 11 (radius: 10) [01:08:38 -13819.437437] SLOW spr round 12 (radius: 15) [01:09:45 -13685.651605] SLOW spr round 13 (radius: 5) [01:10:49 -13616.270628] SLOW spr round 14 (radius: 5) [01:11:48 -13600.535110] SLOW spr round 15 (radius: 5) [01:12:44 -13600.362508] SLOW spr round 16 (radius: 5) [01:13:39 -13600.361533] SLOW spr round 17 (radius: 10) [01:14:37 -13592.714692] SLOW spr round 18 (radius: 5) [01:15:37 -13590.330529] SLOW spr round 19 (radius: 5) [01:16:33 -13590.330143] SLOW spr round 20 (radius: 10) [01:17:31 -13586.511360] SLOW spr round 21 (radius: 5) [01:18:30 -13586.510385] SLOW spr round 22 (radius: 10) [01:19:28 -13586.510366] SLOW spr round 23 (radius: 15) [01:20:33 -13585.969597] SLOW spr round 24 (radius: 5) [01:21:34 -13585.967992] SLOW spr round 25 (radius: 10) [01:22:34 -13585.967413] SLOW spr round 26 (radius: 15) [01:23:38 -13585.967192] SLOW spr round 27 (radius: 20) [01:24:47 -13520.190583] SLOW spr round 28 (radius: 5) [01:25:51 -13509.068128] SLOW spr round 29 (radius: 5) [01:26:51 -13477.675675] SLOW spr round 30 (radius: 5) [01:27:47 -13477.113350] SLOW spr round 31 (radius: 5) [01:28:42 -13477.113202] SLOW spr round 32 (radius: 10) [01:29:40 -13477.113197] SLOW spr round 33 (radius: 15) [01:30:45 -13446.926266] SLOW spr round 34 (radius: 5) [01:31:47 -13367.582131] SLOW spr round 35 (radius: 5) [01:32:44 -13367.582067] SLOW spr round 36 (radius: 10) [01:33:42 -13367.582057] SLOW spr round 37 (radius: 15) [01:34:46 -13367.462449] SLOW spr round 38 (radius: 5) [01:35:47 -13367.461504] SLOW spr round 39 (radius: 10) [01:36:46 -13367.461429] SLOW spr round 40 (radius: 15) [01:37:50 -13367.461420] SLOW spr round 41 (radius: 20) [01:38:59 -13367.185686] SLOW spr round 42 (radius: 5) [01:40:01 -13366.674377] SLOW spr round 43 (radius: 5) [01:40:59 -13366.674229] SLOW spr round 44 (radius: 10) [01:41:58 -13366.674227] SLOW spr round 45 (radius: 15) [01:43:01 -13366.674226] SLOW spr round 46 (radius: 20) [01:44:08 -13366.674226] SLOW spr round 47 (radius: 25) [01:45:19 -13351.417724] SLOW spr round 48 (radius: 5) [01:46:22 -13351.337330] SLOW spr round 49 (radius: 10) [01:47:23 -13351.337260] SLOW spr round 50 (radius: 15) [01:48:26 -13351.337256] SLOW spr round 51 (radius: 20) [01:49:34 -13351.337256] SLOW spr round 52 (radius: 25) [01:50:44 -13351.337255] Model parameter optimization (eps = 0.100000) [01:50:51] ML tree search #2, logLikelihood: -13350.684391 [01:50:51 -72973.164965] Initial branch length optimization [01:50:51 -54653.547221] Model parameter optimization (eps = 10.000000) [01:51:05 -54133.616746] AUTODETECT spr round 1 (radius: 5) [01:52:01 -36605.752076] AUTODETECT spr round 2 (radius: 10) [01:53:01 -26607.330460] AUTODETECT spr round 3 (radius: 15) [01:54:04 -21264.033109] AUTODETECT spr round 4 (radius: 20) [01:55:09 -19814.691487] AUTODETECT spr round 5 (radius: 25) [01:56:15 -18963.092533] SPR radius for FAST iterations: 25 (autodetect) [01:56:15 -18963.092533] Model parameter optimization (eps = 3.000000) [01:56:23 -18932.817857] FAST spr round 1 (radius: 25) [01:57:29 -16628.193958] FAST spr round 2 (radius: 25) [01:58:27 -15805.276872] FAST spr round 3 (radius: 25) [01:59:24 -15181.360596] FAST spr round 4 (radius: 25) [02:00:20 -14902.507196] FAST spr round 5 (radius: 25) [02:01:16 -14709.730288] FAST spr round 6 (radius: 25) [02:02:12 -14597.646905] FAST spr round 7 (radius: 25) [02:03:08 -14536.503180] FAST spr round 8 (radius: 25) [02:04:05 -14521.511845] FAST spr round 9 (radius: 25) [02:04:59 -14521.131595] FAST spr round 10 (radius: 25) [02:05:53 -14521.131546] Model parameter optimization (eps = 1.000000) [02:05:59 -14516.048853] SLOW spr round 1 (radius: 5) [02:06:56 -14512.229877] SLOW spr round 2 (radius: 5) [02:07:53 -14508.705529] SLOW spr round 3 (radius: 5) [02:08:50 -14508.705500] SLOW spr round 4 (radius: 10) [02:09:49 -14488.125439] SLOW spr round 5 (radius: 5) [02:10:50 -14485.779903] SLOW spr round 6 (radius: 5) [02:11:48 -14485.209122] SLOW spr round 7 (radius: 5) [02:12:44 -14485.205681] SLOW spr round 8 (radius: 10) [02:13:42 -14484.420152] SLOW spr round 9 (radius: 5) [02:14:43 -14484.172607] SLOW spr round 10 (radius: 5) [02:15:41 -14484.172387] SLOW spr round 11 (radius: 10) [02:16:39 -14483.748486] SLOW spr round 12 (radius: 5) [02:17:39 -14483.748476] SLOW spr round 13 (radius: 10) [02:18:40 -14322.041810] SLOW spr round 14 (radius: 5) [02:19:41 -14151.342548] SLOW spr round 15 (radius: 5) [02:20:39 -14139.685880] SLOW spr round 16 (radius: 5) [02:21:34 -14138.892548] SLOW spr round 17 (radius: 5) [02:22:31 -14136.352711] SLOW spr round 18 (radius: 5) [02:23:26 -14136.347398] SLOW spr round 19 (radius: 10) [02:24:24 -14133.325984] SLOW spr round 20 (radius: 5) [02:25:23 -14133.319604] SLOW spr round 21 (radius: 10) [02:26:22 -14133.319413] SLOW spr round 22 (radius: 15) [02:27:29 -14084.271703] SLOW spr round 23 (radius: 5) [02:28:32 -14083.045512] SLOW spr round 24 (radius: 5) [02:29:31 -14082.211587] SLOW spr round 25 (radius: 5) [02:30:28 -14081.844595] SLOW spr round 26 (radius: 5) [02:31:23 -14081.842490] SLOW spr round 27 (radius: 10) [02:32:21 -14081.842224] SLOW spr round 28 (radius: 15) [02:33:32 -13861.896618] SLOW spr round 29 (radius: 5) [02:34:36 -13647.723386] SLOW spr round 30 (radius: 5) [02:35:35 -13641.840373] SLOW spr round 31 (radius: 5) [02:36:32 -13637.215567] SLOW spr round 32 (radius: 5) [02:37:27 -13637.087172] SLOW spr round 33 (radius: 5) [02:38:22 -13637.085707] SLOW spr round 34 (radius: 10) [02:39:19 -13613.058811] SLOW spr round 35 (radius: 5) [02:40:19 -13611.298553] SLOW spr round 36 (radius: 5) [02:41:16 -13611.297066] SLOW spr round 37 (radius: 10) [02:42:13 -13611.297005] SLOW spr round 38 (radius: 15) [02:43:19 -13611.297001] SLOW spr round 39 (radius: 20) [02:44:33 -13599.934448] SLOW spr round 40 (radius: 5) [02:45:36 -13599.934053] SLOW spr round 41 (radius: 10) [02:46:38 -13587.616679] SLOW spr round 42 (radius: 5) [02:47:37 -13586.833003] SLOW spr round 43 (radius: 5) [02:48:33 -13586.831669] SLOW spr round 44 (radius: 10) [02:49:31 -13585.960895] SLOW spr round 45 (radius: 5) [02:50:31 -13584.667004] SLOW spr round 46 (radius: 5) [02:51:28 -13584.503901] SLOW spr round 47 (radius: 5) [02:52:23 -13584.494891] SLOW spr round 48 (radius: 10) [02:53:21 -13584.494875] SLOW spr round 49 (radius: 15) [02:54:27 -13584.307964] SLOW spr round 50 (radius: 5) [02:55:29 -13584.307358] SLOW spr round 51 (radius: 10) [02:56:30 -13581.838920] SLOW spr round 52 (radius: 5) [02:57:31 -13581.536389] SLOW spr round 53 (radius: 5) [02:58:27 -13581.535920] SLOW spr round 54 (radius: 10) [02:59:25 -13581.535788] SLOW spr round 55 (radius: 15) [03:00:31 -13581.535750] SLOW spr round 56 (radius: 20) [03:01:45 -13581.535735] SLOW spr round 57 (radius: 25) [03:03:08 -13566.134795] SLOW spr round 58 (radius: 5) [03:04:13 -13514.693975] SLOW spr round 59 (radius: 5) [03:05:13 -13490.350981] SLOW spr round 60 (radius: 5) [03:06:10 -13490.350046] SLOW spr round 61 (radius: 10) [03:07:08 -13490.349376] SLOW spr round 62 (radius: 15) [03:08:13 -13489.364727] SLOW spr round 63 (radius: 5) [03:09:15 -13489.364101] SLOW spr round 64 (radius: 10) [03:10:15 -13489.363587] SLOW spr round 65 (radius: 15) [03:11:20 -13489.363174] SLOW spr round 66 (radius: 20) [03:12:32 -13488.638750] SLOW spr round 67 (radius: 5) [03:13:36 -13488.638572] SLOW spr round 68 (radius: 10) [03:14:38 -13485.566138] SLOW spr round 69 (radius: 5) [03:15:39 -13485.053198] SLOW spr round 70 (radius: 5) [03:16:35 -13483.833027] SLOW spr round 71 (radius: 5) [03:17:30 -13483.608286] SLOW spr round 72 (radius: 5) [03:18:26 -13483.608050] SLOW spr round 73 (radius: 10) [03:19:24 -13483.473170] SLOW spr round 74 (radius: 5) [03:20:24 -13483.472875] SLOW spr round 75 (radius: 10) [03:21:23 -13483.472873] SLOW spr round 76 (radius: 15) [03:22:28 -13483.472873] SLOW spr round 77 (radius: 20) [03:23:39 -13483.295750] SLOW spr round 78 (radius: 5) [03:24:42 -13483.293554] SLOW spr round 79 (radius: 10) [03:25:43 -13483.292755] SLOW spr round 80 (radius: 15) [03:26:48 -13483.292449] SLOW spr round 81 (radius: 20) [03:27:59 -13483.292332] SLOW spr round 82 (radius: 25) [03:29:18 -13475.919628] SLOW spr round 83 (radius: 5) [03:30:22 -13475.711107] SLOW spr round 84 (radius: 5) [03:31:20 -13475.711089] SLOW spr round 85 (radius: 10) [03:32:19 -13475.711087] SLOW spr round 86 (radius: 15) [03:33:24 -13475.711087] SLOW spr round 87 (radius: 20) [03:34:35 -13475.711086] SLOW spr round 88 (radius: 25) [03:35:54 -13473.698763] SLOW spr round 89 (radius: 5) [03:36:57 -13473.698219] SLOW spr round 90 (radius: 10) [03:37:58 -13473.698175] SLOW spr round 91 (radius: 15) [03:39:03 -13473.698171] SLOW spr round 92 (radius: 20) [03:40:14 -13473.698171] SLOW spr round 93 (radius: 25) [03:41:32 -13473.698171] Model parameter optimization (eps = 0.100000) [03:41:40] ML tree search #3, logLikelihood: -13473.197060 [03:41:40 -73778.315573] Initial branch length optimization [03:41:41 -55258.633535] Model parameter optimization (eps = 10.000000) [03:41:57 -54735.021651] AUTODETECT spr round 1 (radius: 5) [03:42:52 -37502.016504] AUTODETECT spr round 2 (radius: 10) [03:43:51 -26663.286634] AUTODETECT spr round 3 (radius: 15) [03:44:52 -21236.252925] AUTODETECT spr round 4 (radius: 20) [03:46:00 -18004.453997] AUTODETECT spr round 5 (radius: 25) [03:47:11 -16078.742287] SPR radius for FAST iterations: 25 (autodetect) [03:47:11 -16078.742287] Model parameter optimization (eps = 3.000000) [03:47:23 -16036.223776] FAST spr round 1 (radius: 25) [03:48:27 -13949.890282] FAST spr round 2 (radius: 25) [03:49:26 -13719.053437] FAST spr round 3 (radius: 25) [03:50:23 -13698.378153] FAST spr round 4 (radius: 25) [03:51:18 -13696.205048] FAST spr round 5 (radius: 25) [03:52:12 -13695.676703] FAST spr round 6 (radius: 25) [03:53:06 -13695.092379] FAST spr round 7 (radius: 25) [03:54:00 -13695.090838] Model parameter optimization (eps = 1.000000) [03:54:09 -13689.583024] SLOW spr round 1 (radius: 5) [03:55:06 -13686.084597] SLOW spr round 2 (radius: 5) [03:56:02 -13685.151691] SLOW spr round 3 (radius: 5) [03:56:57 -13684.883555] SLOW spr round 4 (radius: 5) [03:57:52 -13684.882386] SLOW spr round 5 (radius: 10) [03:58:51 -13645.508781] SLOW spr round 6 (radius: 5) [03:59:52 -13612.876496] SLOW spr round 7 (radius: 5) [04:00:50 -13610.811404] SLOW spr round 8 (radius: 5) [04:01:47 -13609.719791] SLOW spr round 9 (radius: 5) [04:02:42 -13609.719563] SLOW spr round 10 (radius: 10) [04:03:40 -13609.240404] SLOW spr round 11 (radius: 5) [04:04:41 -13605.052092] SLOW spr round 12 (radius: 5) [04:05:37 -13605.050806] SLOW spr round 13 (radius: 10) [04:06:35 -13605.050453] SLOW spr round 14 (radius: 15) [04:07:40 -13605.014449] SLOW spr round 15 (radius: 20) [04:08:53 -13567.580387] SLOW spr round 16 (radius: 5) [04:09:59 -13372.852151] SLOW spr round 17 (radius: 5) [04:10:59 -13265.520155] SLOW spr round 18 (radius: 5) [04:11:57 -13193.859521] SLOW spr round 19 (radius: 5) [04:12:55 -13176.124281] SLOW spr round 20 (radius: 5) [04:13:50 -13175.994615] SLOW spr round 21 (radius: 5) [04:14:46 -13175.994408] SLOW spr round 22 (radius: 10) [04:15:46 -13171.909350] SLOW spr round 23 (radius: 5) [04:16:47 -13162.438503] SLOW spr round 24 (radius: 5) [04:17:45 -13161.707957] SLOW spr round 25 (radius: 5) [04:18:41 -13161.706578] SLOW spr round 26 (radius: 10) [04:19:40 -13161.705897] SLOW spr round 27 (radius: 15) [04:20:46 -13158.934069] SLOW spr round 28 (radius: 5) [04:21:49 -13157.880344] SLOW spr round 29 (radius: 5) [04:22:47 -13157.880299] SLOW spr round 30 (radius: 10) [04:23:46 -13157.880297] SLOW spr round 31 (radius: 15) [04:24:52 -13157.880295] SLOW spr round 32 (radius: 20) [04:26:05 -13156.668070] SLOW spr round 33 (radius: 5) [04:27:08 -13156.665765] SLOW spr round 34 (radius: 10) [04:28:10 -13156.664760] SLOW spr round 35 (radius: 15) [04:29:16 -13156.664317] SLOW spr round 36 (radius: 20) [04:30:29 -13156.664118] SLOW spr round 37 (radius: 25) [04:31:51 -13156.094826] SLOW spr round 38 (radius: 5) [04:32:55 -13156.092264] SLOW spr round 39 (radius: 10) [04:33:57 -13156.091609] SLOW spr round 40 (radius: 15) [04:35:04 -13156.091430] SLOW spr round 41 (radius: 20) [04:36:19 -13119.531483] SLOW spr round 42 (radius: 5) [04:37:22 -13119.494758] SLOW spr round 43 (radius: 10) [04:38:24 -13119.492877] SLOW spr round 44 (radius: 15) [04:39:30 -13119.492335] SLOW spr round 45 (radius: 20) [04:40:43 -13119.492184] SLOW spr round 46 (radius: 25) [04:42:05 -13119.492139] Model parameter optimization (eps = 0.100000) [04:42:10] ML tree search #4, logLikelihood: -13118.460920 [04:42:10 -74225.324168] Initial branch length optimization [04:42:11 -55434.912419] Model parameter optimization (eps = 10.000000) [04:42:24 -54889.629478] AUTODETECT spr round 1 (radius: 5) [04:43:19 -37869.063330] AUTODETECT spr round 2 (radius: 10) [04:44:19 -26585.681013] AUTODETECT spr round 3 (radius: 15) [04:45:23 -21052.665181] AUTODETECT spr round 4 (radius: 20) [04:46:29 -18771.922393] AUTODETECT spr round 5 (radius: 25) [04:47:39 -17722.179751] SPR radius for FAST iterations: 25 (autodetect) [04:47:39 -17722.179751] Model parameter optimization (eps = 3.000000) [04:47:51 -17679.578689] FAST spr round 1 (radius: 25) [04:48:58 -14837.622161] FAST spr round 2 (radius: 25) [04:49:57 -14687.905880] FAST spr round 3 (radius: 25) [04:50:54 -14680.977847] FAST spr round 4 (radius: 25) [04:51:48 -14680.560925] FAST spr round 5 (radius: 25) [04:52:42 -14680.221543] FAST spr round 6 (radius: 25) [04:53:36 -14680.220629] Model parameter optimization (eps = 1.000000) [04:53:45 -14676.935378] SLOW spr round 1 (radius: 5) [04:54:41 -14673.030890] SLOW spr round 2 (radius: 5) [04:55:37 -14672.829979] SLOW spr round 3 (radius: 5) [04:56:32 -14672.829079] SLOW spr round 4 (radius: 10) [04:57:31 -14671.376855] SLOW spr round 5 (radius: 5) [04:58:32 -14670.178047] SLOW spr round 6 (radius: 5) [04:59:29 -14670.177899] SLOW spr round 7 (radius: 10) [05:00:28 -14669.094407] SLOW spr round 8 (radius: 5) [05:01:28 -14669.094289] SLOW spr round 9 (radius: 10) [05:02:27 -14668.655141] SLOW spr round 10 (radius: 5) [05:03:27 -14668.654817] SLOW spr round 11 (radius: 10) [05:04:26 -14668.654697] SLOW spr round 12 (radius: 15) [05:05:37 -14516.636324] SLOW spr round 13 (radius: 5) [05:06:40 -14481.518924] SLOW spr round 14 (radius: 5) [05:07:39 -14481.495349] SLOW spr round 15 (radius: 10) [05:08:41 -14422.034919] SLOW spr round 16 (radius: 5) [05:09:42 -14414.632368] SLOW spr round 17 (radius: 5) [05:10:41 -14413.906202] SLOW spr round 18 (radius: 5) [05:11:36 -14413.879619] SLOW spr round 19 (radius: 10) [05:12:34 -14413.879389] SLOW spr round 20 (radius: 15) [05:13:42 -14413.534261] SLOW spr round 21 (radius: 5) [05:14:46 -14413.406239] SLOW spr round 22 (radius: 5) [05:15:45 -14413.250419] SLOW spr round 23 (radius: 5) [05:16:42 -14411.954398] SLOW spr round 24 (radius: 5) [05:17:39 -14411.505530] SLOW spr round 25 (radius: 5) [05:18:34 -14411.504539] SLOW spr round 26 (radius: 10) [05:19:33 -14410.886582] SLOW spr round 27 (radius: 5) [05:20:33 -14410.886182] SLOW spr round 28 (radius: 10) [05:21:32 -14410.886044] SLOW spr round 29 (radius: 15) [05:22:40 -14410.174976] SLOW spr round 30 (radius: 5) [05:23:43 -14410.146053] SLOW spr round 31 (radius: 10) [05:24:42 -14410.145428] SLOW spr round 32 (radius: 15) [05:25:50 -14410.145172] SLOW spr round 33 (radius: 20) [05:27:08 -14210.747524] SLOW spr round 34 (radius: 5) [05:28:13 -14156.045504] SLOW spr round 35 (radius: 5) [05:29:13 -14146.398809] SLOW spr round 36 (radius: 5) [05:30:11 -14146.089052] SLOW spr round 37 (radius: 5) [05:31:06 -14146.087978] SLOW spr round 38 (radius: 10) [05:32:06 -14113.888210] SLOW spr round 39 (radius: 5) [05:33:07 -14064.409422] SLOW spr round 40 (radius: 5) [05:34:06 -14061.654995] SLOW spr round 41 (radius: 5) [05:35:01 -14061.217666] SLOW spr round 42 (radius: 5) [05:35:58 -14059.508396] SLOW spr round 43 (radius: 5) [05:36:55 -14056.889058] SLOW spr round 44 (radius: 5) [05:37:50 -14056.888998] SLOW spr round 45 (radius: 10) [05:38:49 -14054.759488] SLOW spr round 46 (radius: 5) [05:39:49 -14054.759445] SLOW spr round 47 (radius: 10) [05:40:49 -14048.351025] SLOW spr round 48 (radius: 5) [05:41:49 -14047.955402] SLOW spr round 49 (radius: 5) [05:42:46 -14047.954583] SLOW spr round 50 (radius: 10) [05:43:45 -14043.646037] SLOW spr round 51 (radius: 5) [05:44:45 -14043.645967] SLOW spr round 52 (radius: 10) [05:45:44 -14043.645940] SLOW spr round 53 (radius: 15) [05:46:52 -14039.259200] SLOW spr round 54 (radius: 5) [05:47:55 -14036.384657] SLOW spr round 55 (radius: 5) [05:48:53 -14033.193140] SLOW spr round 56 (radius: 5) [05:49:50 -14032.775789] SLOW spr round 57 (radius: 5) [05:50:45 -14032.773370] SLOW spr round 58 (radius: 10) [05:51:43 -14032.772710] SLOW spr round 59 (radius: 15) [05:52:50 -14031.053218] SLOW spr round 60 (radius: 5) [05:53:53 -14029.021199] SLOW spr round 61 (radius: 5) [05:54:50 -14029.021138] SLOW spr round 62 (radius: 10) [05:55:49 -14029.021109] SLOW spr round 63 (radius: 15) [05:56:54 -14029.021092] SLOW spr round 64 (radius: 20) [05:58:06 -14027.650940] SLOW spr round 65 (radius: 5) [05:59:09 -14027.297028] SLOW spr round 66 (radius: 5) [06:00:08 -14027.296312] SLOW spr round 67 (radius: 10) [06:01:06 -14027.296293] SLOW spr round 68 (radius: 15) [06:02:12 -14027.296277] SLOW spr round 69 (radius: 20) [06:03:25 -14027.296260] SLOW spr round 70 (radius: 25) [06:04:43 -14023.221914] SLOW spr round 71 (radius: 5) [06:05:47 -14023.221883] SLOW spr round 72 (radius: 10) [06:06:50 -13975.644274] SLOW spr round 73 (radius: 5) [06:07:50 -13975.643503] SLOW spr round 74 (radius: 10) [06:08:49 -13975.245487] SLOW spr round 75 (radius: 5) [06:09:49 -13975.235825] SLOW spr round 76 (radius: 10) [06:10:48 -13975.235441] SLOW spr round 77 (radius: 15) [06:11:54 -13975.121323] SLOW spr round 78 (radius: 5) [06:12:55 -13975.118889] SLOW spr round 79 (radius: 10) [06:13:55 -13975.118449] SLOW spr round 80 (radius: 15) [06:15:00 -13975.118358] SLOW spr round 81 (radius: 20) [06:16:11 -13975.118331] SLOW spr round 82 (radius: 25) [06:17:29 -13975.118290] Model parameter optimization (eps = 0.100000) [06:17:33] ML tree search #5, logLikelihood: -13974.756235 [06:17:34 -73971.447478] Initial branch length optimization [06:17:34 -54940.677888] Model parameter optimization (eps = 10.000000) [06:17:49 -54434.469149] AUTODETECT spr round 1 (radius: 5) [06:18:43 -37151.442974] AUTODETECT spr round 2 (radius: 10) [06:19:41 -26940.382306] AUTODETECT spr round 3 (radius: 15) [06:20:44 -21710.350460] AUTODETECT spr round 4 (radius: 20) [06:21:55 -17920.841174] AUTODETECT spr round 5 (radius: 25) [06:23:06 -15907.843201] SPR radius for FAST iterations: 25 (autodetect) [06:23:06 -15907.843201] Model parameter optimization (eps = 3.000000) [06:23:15 -15873.668441] FAST spr round 1 (radius: 25) [06:24:19 -13927.229512] FAST spr round 2 (radius: 25) [06:25:17 -13706.982247] FAST spr round 3 (radius: 25) [06:26:13 -13689.519598] FAST spr round 4 (radius: 25) [06:27:08 -13687.036402] FAST spr round 5 (radius: 25) [06:28:03 -13687.034203] Model parameter optimization (eps = 1.000000) [06:28:07 -13686.122980] SLOW spr round 1 (radius: 5) [06:29:03 -13665.442994] SLOW spr round 2 (radius: 5) [06:29:57 -13665.441512] SLOW spr round 3 (radius: 10) [06:30:55 -13664.918918] SLOW spr round 4 (radius: 5) [06:31:55 -13664.879008] SLOW spr round 5 (radius: 10) [06:32:53 -13663.759820] SLOW spr round 6 (radius: 5) [06:33:52 -13663.759769] SLOW spr round 7 (radius: 10) [06:34:51 -13663.759764] SLOW spr round 8 (radius: 15) [06:35:56 -13657.597684] SLOW spr round 9 (radius: 5) [06:36:59 -13648.370284] SLOW spr round 10 (radius: 5) [06:37:56 -13648.077368] SLOW spr round 11 (radius: 5) [06:38:52 -13648.077360] SLOW spr round 12 (radius: 10) [06:39:50 -13647.849261] SLOW spr round 13 (radius: 5) [06:40:49 -13647.797226] SLOW spr round 14 (radius: 10) [06:41:48 -13647.441890] SLOW spr round 15 (radius: 5) [06:42:47 -13647.441844] SLOW spr round 16 (radius: 10) [06:43:45 -13647.441843] SLOW spr round 17 (radius: 15) [06:44:51 -13647.441842] SLOW spr round 18 (radius: 20) [06:46:05 -13635.680269] SLOW spr round 19 (radius: 5) [06:47:08 -13635.675245] SLOW spr round 20 (radius: 10) [06:48:10 -13635.674721] SLOW spr round 21 (radius: 15) [06:49:15 -13635.674436] SLOW spr round 22 (radius: 20) [06:50:29 -13635.674280] SLOW spr round 23 (radius: 25) [06:51:56 -13631.801247] SLOW spr round 24 (radius: 5) [06:53:00 -13630.583110] SLOW spr round 25 (radius: 5) [06:54:00 -13628.755582] SLOW spr round 26 (radius: 5) [06:54:56 -13628.754545] SLOW spr round 27 (radius: 10) [06:55:54 -13628.754414] SLOW spr round 28 (radius: 15) [06:57:00 -13626.163058] SLOW spr round 29 (radius: 5) [06:58:02 -13626.163022] SLOW spr round 30 (radius: 10) [06:59:02 -13626.163016] SLOW spr round 31 (radius: 15) [07:00:08 -13626.163014] SLOW spr round 32 (radius: 20) [07:01:24 -13626.163014] SLOW spr round 33 (radius: 25) [07:02:52 -13626.163014] Model parameter optimization (eps = 0.100000) [07:02:59] ML tree search #6, logLikelihood: -13626.002048 [07:02:59 -74002.294485] Initial branch length optimization [07:02:59 -55205.407411] Model parameter optimization (eps = 10.000000) [07:03:14 -54652.598844] AUTODETECT spr round 1 (radius: 5) [07:04:10 -36624.470235] AUTODETECT spr round 2 (radius: 10) [07:05:08 -27349.223700] AUTODETECT spr round 3 (radius: 15) [07:06:09 -22100.548359] AUTODETECT spr round 4 (radius: 20) [07:07:14 -19466.747766] AUTODETECT spr round 5 (radius: 25) [07:08:24 -17125.903445] SPR radius for FAST iterations: 25 (autodetect) [07:08:24 -17125.903445] Model parameter optimization (eps = 3.000000) [07:08:34 -17087.128647] FAST spr round 1 (radius: 25) [07:09:40 -14704.944466] FAST spr round 2 (radius: 25) [07:10:42 -14212.800406] FAST spr round 3 (radius: 25) [07:11:39 -14146.705607] FAST spr round 4 (radius: 25) [07:12:35 -14146.668782] Model parameter optimization (eps = 1.000000) [07:12:44 -14138.210208] SLOW spr round 1 (radius: 5) [07:13:41 -14019.362605] SLOW spr round 2 (radius: 5) [07:14:37 -14018.414089] SLOW spr round 3 (radius: 5) [07:15:33 -14018.410331] SLOW spr round 4 (radius: 10) [07:16:32 -14004.062953] SLOW spr round 5 (radius: 5) [07:17:33 -14004.003245] SLOW spr round 6 (radius: 10) [07:18:32 -14002.564240] SLOW spr round 7 (radius: 5) [07:19:33 -14001.854087] SLOW spr round 8 (radius: 5) [07:20:32 -13999.114688] SLOW spr round 9 (radius: 5) [07:21:27 -13999.114542] SLOW spr round 10 (radius: 10) [07:22:25 -13999.114515] SLOW spr round 11 (radius: 15) [07:23:35 -13882.201182] SLOW spr round 12 (radius: 5) [07:24:38 -13837.006056] SLOW spr round 13 (radius: 5) [07:25:37 -13836.265384] SLOW spr round 14 (radius: 5) [07:26:33 -13836.263122] SLOW spr round 15 (radius: 10) [07:27:32 -13835.416397] SLOW spr round 16 (radius: 5) [07:28:32 -13835.188680] SLOW spr round 17 (radius: 5) [07:29:28 -13835.187666] SLOW spr round 18 (radius: 10) [07:30:26 -13835.187515] SLOW spr round 19 (radius: 15) [07:31:35 -13835.159992] SLOW spr round 20 (radius: 20) [07:32:57 -13682.794344] SLOW spr round 21 (radius: 5) [07:34:02 -13541.394994] SLOW spr round 22 (radius: 5) [07:35:02 -13528.517951] SLOW spr round 23 (radius: 5) [07:36:00 -13522.125086] SLOW spr round 24 (radius: 5) [07:36:56 -13521.232590] SLOW spr round 25 (radius: 5) [07:37:51 -13518.863184] SLOW spr round 26 (radius: 5) [07:38:47 -13518.862784] SLOW spr round 27 (radius: 10) [07:39:45 -13516.965734] SLOW spr round 28 (radius: 5) [07:40:47 -13513.486448] SLOW spr round 29 (radius: 5) [07:41:45 -13510.878249] SLOW spr round 30 (radius: 5) [07:42:41 -13508.897635] SLOW spr round 31 (radius: 5) [07:43:36 -13508.897388] SLOW spr round 32 (radius: 10) [07:44:34 -13508.749901] SLOW spr round 33 (radius: 5) [07:45:34 -13508.749178] SLOW spr round 34 (radius: 10) [07:46:33 -13508.578534] SLOW spr round 35 (radius: 5) [07:47:33 -13508.578395] SLOW spr round 36 (radius: 10) [07:48:31 -13508.578347] SLOW spr round 37 (radius: 15) [07:49:38 -13507.270217] SLOW spr round 38 (radius: 5) [07:50:40 -13507.269191] SLOW spr round 39 (radius: 10) [07:51:39 -13507.269155] SLOW spr round 40 (radius: 15) [07:52:46 -13507.269120] SLOW spr round 41 (radius: 20) [07:54:02 -13507.269086] SLOW spr round 42 (radius: 25) [07:55:25 -13455.398492] SLOW spr round 43 (radius: 5) [07:56:31 -13420.231155] SLOW spr round 44 (radius: 5) [07:57:30 -13407.136195] SLOW spr round 45 (radius: 5) [07:58:27 -13406.812936] SLOW spr round 46 (radius: 5) [07:59:22 -13406.812245] SLOW spr round 47 (radius: 10) [08:00:21 -13395.439185] SLOW spr round 48 (radius: 5) [08:01:21 -13395.438577] SLOW spr round 49 (radius: 10) [08:02:21 -13268.257260] SLOW spr round 50 (radius: 5) [08:03:22 -13251.493721] SLOW spr round 51 (radius: 5) [08:04:19 -13251.329319] SLOW spr round 52 (radius: 5) [08:05:15 -13251.327602] SLOW spr round 53 (radius: 10) [08:06:13 -13251.327115] SLOW spr round 54 (radius: 15) [08:07:20 -13251.326959] SLOW spr round 55 (radius: 20) [08:08:40 -13209.711227] SLOW spr round 56 (radius: 5) [08:09:44 -13056.171779] SLOW spr round 57 (radius: 5) [08:10:44 -12996.367173] SLOW spr round 58 (radius: 5) [08:11:44 -12994.683004] SLOW spr round 59 (radius: 5) [08:12:40 -12993.789046] SLOW spr round 60 (radius: 5) [08:13:35 -12993.787328] SLOW spr round 61 (radius: 10) [08:14:34 -12977.836920] SLOW spr round 62 (radius: 5) [08:15:35 -12965.052285] SLOW spr round 63 (radius: 5) [08:16:33 -12965.051988] SLOW spr round 64 (radius: 10) [08:17:31 -12965.051866] SLOW spr round 65 (radius: 15) [08:18:38 -12965.051750] SLOW spr round 66 (radius: 20) [08:19:56 -12963.184799] SLOW spr round 67 (radius: 5) [08:20:59 -12963.183742] SLOW spr round 68 (radius: 10) [08:22:00 -12963.183504] SLOW spr round 69 (radius: 15) [08:23:07 -12963.183447] SLOW spr round 70 (radius: 20) [08:24:22 -12963.183430] SLOW spr round 71 (radius: 25) [08:25:49 -12958.055413] SLOW spr round 72 (radius: 5) [08:26:53 -12958.054440] SLOW spr round 73 (radius: 10) [08:27:55 -12958.054266] SLOW spr round 74 (radius: 15) [08:29:02 -12958.043156] SLOW spr round 75 (radius: 20) [08:30:18 -12958.043097] SLOW spr round 76 (radius: 25) [08:31:41 -12958.043064] Model parameter optimization (eps = 0.100000) [08:31:49] ML tree search #7, logLikelihood: -12957.378711 [08:31:49 -73972.172389] Initial branch length optimization [08:31:49 -55070.888976] Model parameter optimization (eps = 10.000000) [08:32:02 -54598.900145] AUTODETECT spr round 1 (radius: 5) [08:32:58 -35226.968539] AUTODETECT spr round 2 (radius: 10) [08:33:55 -26283.498398] AUTODETECT spr round 3 (radius: 15) [08:34:58 -20983.452603] AUTODETECT spr round 4 (radius: 20) [08:36:12 -17732.295692] AUTODETECT spr round 5 (radius: 25) [08:37:23 -17168.248680] SPR radius for FAST iterations: 25 (autodetect) [08:37:23 -17168.248680] Model parameter optimization (eps = 3.000000) [08:37:32 -17110.419640] FAST spr round 1 (radius: 25) [08:38:39 -14515.601359] FAST spr round 2 (radius: 25) [08:39:38 -14277.027737] FAST spr round 3 (radius: 25) [08:40:36 -14154.964715] FAST spr round 4 (radius: 25) [08:41:32 -14074.840824] FAST spr round 5 (radius: 25) [08:42:28 -14064.226599] FAST spr round 6 (radius: 25) [08:43:22 -14064.226150] Model parameter optimization (eps = 1.000000) [08:43:31 -14060.946998] SLOW spr round 1 (radius: 5) [08:44:26 -14055.641612] SLOW spr round 2 (radius: 5) [08:45:23 -14053.961423] SLOW spr round 3 (radius: 5) [08:46:19 -14053.959456] SLOW spr round 4 (radius: 10) [08:47:19 -14053.584586] SLOW spr round 5 (radius: 5) [08:48:21 -14050.232561] SLOW spr round 6 (radius: 5) [08:49:19 -14049.032394] SLOW spr round 7 (radius: 5) [08:50:16 -14049.030612] SLOW spr round 8 (radius: 10) [08:51:16 -14049.030511] SLOW spr round 9 (radius: 15) [08:52:24 -14044.041812] SLOW spr round 10 (radius: 5) [08:53:27 -14044.040888] SLOW spr round 11 (radius: 10) [08:54:28 -14043.250523] SLOW spr round 12 (radius: 5) [08:55:28 -14043.194737] SLOW spr round 13 (radius: 10) [08:56:27 -14043.193533] SLOW spr round 14 (radius: 15) [08:57:34 -14039.402599] SLOW spr round 15 (radius: 5) [08:58:36 -14039.316146] SLOW spr round 16 (radius: 10) [08:59:36 -14039.315105] SLOW spr round 17 (radius: 15) [09:00:43 -13952.137247] SLOW spr round 18 (radius: 5) [09:01:46 -13952.137200] SLOW spr round 19 (radius: 10) [09:02:47 -13932.779564] SLOW spr round 20 (radius: 5) [09:03:47 -13932.779559] SLOW spr round 21 (radius: 10) [09:04:46 -13932.779557] SLOW spr round 22 (radius: 15) [09:05:54 -13897.405880] SLOW spr round 23 (radius: 5) [09:06:58 -13797.703285] SLOW spr round 24 (radius: 5) [09:07:58 -13790.685037] SLOW spr round 25 (radius: 5) [09:08:54 -13790.682958] SLOW spr round 26 (radius: 10) [09:09:53 -13789.013918] SLOW spr round 27 (radius: 5) [09:10:54 -13789.011803] SLOW spr round 28 (radius: 10) [09:11:53 -13789.011247] SLOW spr round 29 (radius: 15) [09:13:00 -13789.010967] SLOW spr round 30 (radius: 20) [09:14:14 -13768.249073] SLOW spr round 31 (radius: 5) [09:15:19 -13767.474599] SLOW spr round 32 (radius: 5) [09:16:18 -13767.270937] SLOW spr round 33 (radius: 5) [09:17:15 -13766.933728] SLOW spr round 34 (radius: 5) [09:18:10 -13766.933716] SLOW spr round 35 (radius: 10) [09:19:10 -13766.933710] SLOW spr round 36 (radius: 15) [09:20:16 -13693.099563] SLOW spr round 37 (radius: 5) [09:21:19 -13693.099554] SLOW spr round 38 (radius: 10) [09:22:20 -13693.099551] SLOW spr round 39 (radius: 15) [09:23:25 -13693.099549] SLOW spr round 40 (radius: 20) [09:24:38 -13693.099547] SLOW spr round 41 (radius: 25) [09:26:02 -13692.967783] SLOW spr round 42 (radius: 5) [09:27:05 -13692.967781] SLOW spr round 43 (radius: 10) [09:28:08 -13692.967780] SLOW spr round 44 (radius: 15) [09:29:15 -13692.857820] SLOW spr round 45 (radius: 5) [09:30:17 -13692.855652] SLOW spr round 46 (radius: 10) [09:31:18 -13692.855207] SLOW spr round 47 (radius: 15) [09:32:25 -13692.855084] SLOW spr round 48 (radius: 20) [09:33:39 -13692.623552] SLOW spr round 49 (radius: 5) [09:34:42 -13692.623551] SLOW spr round 50 (radius: 10) [09:35:44 -13692.623549] SLOW spr round 51 (radius: 15) [09:36:51 -13692.623547] SLOW spr round 52 (radius: 20) [09:38:05 -13689.125787] SLOW spr round 53 (radius: 5) [09:39:09 -13689.124356] SLOW spr round 54 (radius: 10) [09:40:11 -13687.116271] SLOW spr round 55 (radius: 5) [09:41:11 -13687.114398] SLOW spr round 56 (radius: 10) [09:42:11 -13687.114326] SLOW spr round 57 (radius: 15) [09:43:17 -13687.114312] SLOW spr round 58 (radius: 20) [09:44:29 -13687.114308] SLOW spr round 59 (radius: 25) [09:45:52 -13687.114306] Model parameter optimization (eps = 0.100000) [09:45:57] ML tree search #8, logLikelihood: -13686.713660 [09:45:57 -73762.755245] Initial branch length optimization [09:45:58 -55383.251132] Model parameter optimization (eps = 10.000000) [09:46:16 -54837.171307] AUTODETECT spr round 1 (radius: 5) [09:47:10 -36721.912965] AUTODETECT spr round 2 (radius: 10) [09:48:08 -25972.473231] AUTODETECT spr round 3 (radius: 15) [09:49:12 -20244.334859] AUTODETECT spr round 4 (radius: 20) [09:50:17 -17668.725224] AUTODETECT spr round 5 (radius: 25) [09:51:33 -16836.485344] SPR radius for FAST iterations: 25 (autodetect) [09:51:33 -16836.485344] Model parameter optimization (eps = 3.000000) [09:51:45 -16785.474416] FAST spr round 1 (radius: 25) [09:52:50 -14082.569585] FAST spr round 2 (radius: 25) [09:53:49 -13805.289390] FAST spr round 3 (radius: 25) [09:54:45 -13640.446417] FAST spr round 4 (radius: 25) [09:55:39 -13630.112578] FAST spr round 5 (radius: 25) [09:56:33 -13630.110786] Model parameter optimization (eps = 1.000000) [09:56:39 -13627.453802] SLOW spr round 1 (radius: 5) [09:57:35 -13624.664520] SLOW spr round 2 (radius: 5) [09:58:30 -13624.663902] SLOW spr round 3 (radius: 10) [09:59:28 -13615.764608] SLOW spr round 4 (radius: 5) [10:00:27 -13610.425011] SLOW spr round 5 (radius: 5) [10:01:23 -13608.143313] SLOW spr round 6 (radius: 5) [10:02:18 -13608.143217] SLOW spr round 7 (radius: 10) [10:03:15 -13608.143190] SLOW spr round 8 (radius: 15) [10:04:20 -13606.870912] SLOW spr round 9 (radius: 5) [10:05:22 -13606.530946] SLOW spr round 10 (radius: 5) [10:06:18 -13606.530889] SLOW spr round 11 (radius: 10) [10:07:16 -13606.530884] SLOW spr round 12 (radius: 15) [10:08:20 -13606.530883] SLOW spr round 13 (radius: 20) [10:09:30 -13605.757687] SLOW spr round 14 (radius: 5) [10:10:32 -13604.088808] SLOW spr round 15 (radius: 5) [10:11:30 -13602.137403] SLOW spr round 16 (radius: 5) [10:12:26 -13601.424213] SLOW spr round 17 (radius: 5) [10:13:21 -13601.424061] SLOW spr round 18 (radius: 10) [10:14:19 -13601.424060] SLOW spr round 19 (radius: 15) [10:15:23 -13601.424060] SLOW spr round 20 (radius: 20) [10:16:35 -13600.695241] SLOW spr round 21 (radius: 5) [10:17:37 -13600.695232] SLOW spr round 22 (radius: 10) [10:18:37 -13600.138727] SLOW spr round 23 (radius: 5) [10:19:36 -13600.138727] SLOW spr round 24 (radius: 10) [10:20:35 -13600.138727] SLOW spr round 25 (radius: 15) [10:21:39 -13600.138726] SLOW spr round 26 (radius: 20) [10:22:54 -13449.858547] SLOW spr round 27 (radius: 5) [10:23:58 -13349.820037] SLOW spr round 28 (radius: 5) [10:24:57 -13336.420855] SLOW spr round 29 (radius: 5) [10:25:55 -13331.243574] SLOW spr round 30 (radius: 5) [10:26:51 -13330.745197] SLOW spr round 31 (radius: 5) [10:27:46 -13330.736514] SLOW spr round 32 (radius: 10) [10:28:45 -13329.214596] SLOW spr round 33 (radius: 5) [10:29:45 -13325.640383] SLOW spr round 34 (radius: 5) [10:30:41 -13325.640288] SLOW spr round 35 (radius: 10) [10:31:40 -13323.857592] SLOW spr round 36 (radius: 5) [10:32:39 -13323.857544] SLOW spr round 37 (radius: 10) [10:33:38 -13321.882444] SLOW spr round 38 (radius: 5) [10:34:37 -13321.882337] SLOW spr round 39 (radius: 10) [10:35:36 -13321.882335] SLOW spr round 40 (radius: 15) [10:36:42 -13317.358703] SLOW spr round 41 (radius: 5) [10:37:44 -13317.357427] SLOW spr round 42 (radius: 10) [10:38:44 -13317.048796] SLOW spr round 43 (radius: 5) [10:39:44 -13317.047418] SLOW spr round 44 (radius: 10) [10:40:43 -13317.047364] SLOW spr round 45 (radius: 15) [10:41:48 -13317.047362] SLOW spr round 46 (radius: 20) [10:43:00 -13316.843090] SLOW spr round 47 (radius: 5) [10:44:03 -13316.843008] SLOW spr round 48 (radius: 10) [10:45:04 -13316.230879] SLOW spr round 49 (radius: 5) [10:46:04 -13316.185331] SLOW spr round 50 (radius: 10) [10:47:03 -13316.185267] SLOW spr round 51 (radius: 15) [10:48:08 -13316.185264] SLOW spr round 52 (radius: 20) [10:49:19 -13316.185264] SLOW spr round 53 (radius: 25) [10:50:34 -13314.512986] SLOW spr round 54 (radius: 5) [10:51:38 -13314.502727] SLOW spr round 55 (radius: 10) [10:52:40 -13314.501284] SLOW spr round 56 (radius: 15) [10:53:46 -13314.501077] SLOW spr round 57 (radius: 20) [10:54:58 -13303.615150] SLOW spr round 58 (radius: 5) [10:56:00 -13295.689031] SLOW spr round 59 (radius: 5) [10:56:58 -13295.689028] SLOW spr round 60 (radius: 10) [10:57:57 -13295.689027] SLOW spr round 61 (radius: 15) [10:59:02 -13295.689027] SLOW spr round 62 (radius: 20) [11:00:13 -13295.689027] SLOW spr round 63 (radius: 25) [11:01:28 -13295.423118] SLOW spr round 64 (radius: 5) [11:02:32 -13295.422852] SLOW spr round 65 (radius: 10) [11:03:34 -13294.736550] SLOW spr round 66 (radius: 5) [11:04:33 -13294.733842] SLOW spr round 67 (radius: 10) [11:05:32 -13294.732411] SLOW spr round 68 (radius: 15) [11:06:37 -13294.731542] SLOW spr round 69 (radius: 20) [11:07:48 -13294.730954] SLOW spr round 70 (radius: 25) [11:09:03 -13294.730520] Model parameter optimization (eps = 0.100000) [11:09:08] ML tree search #9, logLikelihood: -13294.340073 [11:09:08 -73812.147481] Initial branch length optimization [11:09:09 -54903.714236] Model parameter optimization (eps = 10.000000) [11:09:22 -54280.369925] AUTODETECT spr round 1 (radius: 5) [11:10:16 -36760.217930] AUTODETECT spr round 2 (radius: 10) [11:11:14 -26163.957001] AUTODETECT spr round 3 (radius: 15) [11:12:18 -20066.337976] AUTODETECT spr round 4 (radius: 20) [11:13:27 -17935.008884] AUTODETECT spr round 5 (radius: 25) [11:14:37 -16851.189027] SPR radius for FAST iterations: 25 (autodetect) [11:14:37 -16851.189027] Model parameter optimization (eps = 3.000000) [11:14:48 -16806.030706] FAST spr round 1 (radius: 25) [11:15:52 -14803.163548] FAST spr round 2 (radius: 25) [11:16:49 -14689.626104] FAST spr round 3 (radius: 25) [11:17:44 -14661.867719] FAST spr round 4 (radius: 25) [11:18:38 -14656.527293] FAST spr round 5 (radius: 25) [11:19:30 -14653.829044] FAST spr round 6 (radius: 25) [11:20:23 -14651.388103] FAST spr round 7 (radius: 25) [11:21:15 -14651.387297] Model parameter optimization (eps = 1.000000) [11:21:23 -14648.519068] SLOW spr round 1 (radius: 5) [11:22:19 -14584.706266] SLOW spr round 2 (radius: 5) [11:23:14 -14577.907221] SLOW spr round 3 (radius: 5) [11:24:10 -14576.754619] SLOW spr round 4 (radius: 5) [11:25:04 -14576.754455] SLOW spr round 5 (radius: 10) [11:26:03 -14574.496433] SLOW spr round 6 (radius: 5) [11:27:02 -14574.354478] SLOW spr round 7 (radius: 5) [11:27:58 -14574.353676] SLOW spr round 8 (radius: 10) [11:28:56 -14573.232933] SLOW spr round 9 (radius: 5) [11:29:55 -14573.232424] SLOW spr round 10 (radius: 10) [11:30:53 -14571.874316] SLOW spr round 11 (radius: 5) [11:31:53 -14571.872882] SLOW spr round 12 (radius: 10) [11:32:51 -14571.872566] SLOW spr round 13 (radius: 15) [11:33:57 -14567.189036] SLOW spr round 14 (radius: 5) [11:34:59 -14567.079497] SLOW spr round 15 (radius: 5) [11:35:56 -14567.078773] SLOW spr round 16 (radius: 10) [11:36:54 -14567.078470] SLOW spr round 17 (radius: 15) [11:38:00 -14567.078333] SLOW spr round 18 (radius: 20) [11:39:14 -14567.078257] SLOW spr round 19 (radius: 25) [11:40:41 -14481.564656] SLOW spr round 20 (radius: 5) [11:41:47 -14410.325369] SLOW spr round 21 (radius: 5) [11:42:47 -14391.796726] SLOW spr round 22 (radius: 5) [11:43:44 -14391.790604] SLOW spr round 23 (radius: 10) [11:44:41 -14390.511729] SLOW spr round 24 (radius: 5) [11:45:41 -14390.511715] SLOW spr round 25 (radius: 10) [11:46:39 -14390.511714] SLOW spr round 26 (radius: 15) [11:47:46 -14390.457669] SLOW spr round 27 (radius: 20) [11:49:01 -14390.457668] SLOW spr round 28 (radius: 25) [11:50:29 -14387.980225] SLOW spr round 29 (radius: 5) [11:51:33 -14384.818179] SLOW spr round 30 (radius: 5) [11:52:32 -14384.817198] SLOW spr round 31 (radius: 10) [11:53:31 -14384.685857] SLOW spr round 32 (radius: 5) [11:54:29 -14384.685854] SLOW spr round 33 (radius: 10) [11:55:28 -14384.685853] SLOW spr round 34 (radius: 15) [11:56:35 -14384.685851] SLOW spr round 35 (radius: 20) [11:57:53 -14383.138949] SLOW spr round 36 (radius: 5) [11:58:57 -14382.785033] SLOW spr round 37 (radius: 5) [11:59:56 -14379.400820] SLOW spr round 38 (radius: 5) [12:00:52 -14379.400180] SLOW spr round 39 (radius: 10) [12:01:51 -14379.400005] SLOW spr round 40 (radius: 15) [12:02:58 -14379.399956] SLOW spr round 41 (radius: 20) [12:04:13 -14379.399942] SLOW spr round 42 (radius: 25) [12:05:41 -14379.399937] Model parameter optimization (eps = 0.100000) [12:05:46] ML tree search #10, logLikelihood: -14378.797243 [12:05:46 -73926.116843] Initial branch length optimization [12:05:47 -55102.088605] Model parameter optimization (eps = 10.000000) [12:06:02 -54605.990258] AUTODETECT spr round 1 (radius: 5) [12:06:57 -36345.722806] AUTODETECT spr round 2 (radius: 10) [12:07:55 -25824.990018] AUTODETECT spr round 3 (radius: 15) [12:08:56 -21067.580335] AUTODETECT spr round 4 (radius: 20) [12:10:02 -18728.524399] AUTODETECT spr round 5 (radius: 25) [12:11:11 -17672.166190] SPR radius for FAST iterations: 25 (autodetect) [12:11:11 -17672.166190] Model parameter optimization (eps = 3.000000) [12:11:24 -17615.863136] FAST spr round 1 (radius: 25) [12:12:30 -14328.171974] FAST spr round 2 (radius: 25) [12:13:30 -14025.591238] FAST spr round 3 (radius: 25) [12:14:27 -13954.189471] FAST spr round 4 (radius: 25) [12:15:24 -13946.002056] FAST spr round 5 (radius: 25) [12:16:20 -13945.228350] FAST spr round 6 (radius: 25) [12:17:15 -13945.228336] Model parameter optimization (eps = 1.000000) [12:17:23 -13939.924214] SLOW spr round 1 (radius: 5) [12:18:20 -13905.011645] SLOW spr round 2 (radius: 5) [12:19:17 -13904.730121] SLOW spr round 3 (radius: 5) [12:20:13 -13904.729021] SLOW spr round 4 (radius: 10) [12:21:11 -13904.707230] SLOW spr round 5 (radius: 15) [12:22:19 -13891.901283] SLOW spr round 6 (radius: 5) [12:23:21 -13840.119644] SLOW spr round 7 (radius: 5) [12:24:21 -13804.458576] SLOW spr round 8 (radius: 5) [12:25:18 -13799.960788] SLOW spr round 9 (radius: 5) [12:26:14 -13799.960739] SLOW spr round 10 (radius: 10) [12:27:12 -13799.960728] SLOW spr round 11 (radius: 15) [12:28:19 -13797.331403] SLOW spr round 12 (radius: 5) [12:29:23 -13791.845644] SLOW spr round 13 (radius: 5) [12:30:21 -13791.844292] SLOW spr round 14 (radius: 10) [12:31:20 -13791.844029] SLOW spr round 15 (radius: 15) [12:32:26 -13791.843951] SLOW spr round 16 (radius: 20) [12:33:40 -13790.477655] SLOW spr round 17 (radius: 5) [12:34:44 -13790.477637] SLOW spr round 18 (radius: 10) [12:35:45 -13789.696196] SLOW spr round 19 (radius: 5) [12:36:44 -13789.696178] SLOW spr round 20 (radius: 10) [12:37:43 -13789.696177] SLOW spr round 21 (radius: 15) [12:38:48 -13789.696176] SLOW spr round 22 (radius: 20) [12:40:01 -13789.696176] SLOW spr round 23 (radius: 25) [12:41:22 -13789.090222] SLOW spr round 24 (radius: 5) [12:42:25 -13789.087548] SLOW spr round 25 (radius: 10) [12:43:27 -13789.087323] SLOW spr round 26 (radius: 15) [12:44:32 -13789.087162] SLOW spr round 27 (radius: 20) [12:45:45 -13789.087046] SLOW spr round 28 (radius: 25) [12:47:05 -13789.086962] Model parameter optimization (eps = 0.100000) [12:47:11] ML tree search #11, logLikelihood: -13788.703833 [12:47:11 -73293.631726] Initial branch length optimization [12:47:11 -54690.454890] Model parameter optimization (eps = 10.000000) [12:47:29 -54127.385402] AUTODETECT spr round 1 (radius: 5) [12:48:24 -36007.874805] AUTODETECT spr round 2 (radius: 10) [12:49:24 -27016.639474] AUTODETECT spr round 3 (radius: 15) [12:50:26 -21869.345404] AUTODETECT spr round 4 (radius: 20) [12:51:31 -19249.372183] AUTODETECT spr round 5 (radius: 25) [12:52:40 -18643.768587] SPR radius for FAST iterations: 25 (autodetect) [12:52:40 -18643.768587] Model parameter optimization (eps = 3.000000) [12:52:48 -18610.514124] FAST spr round 1 (radius: 25) [12:53:53 -15508.272873] FAST spr round 2 (radius: 25) [12:54:52 -15116.306050] FAST spr round 3 (radius: 25) [12:55:49 -15045.890501] FAST spr round 4 (radius: 25) [12:56:45 -15025.119403] FAST spr round 5 (radius: 25) [12:57:41 -15022.566991] FAST spr round 6 (radius: 25) [12:58:36 -15022.543272] Model parameter optimization (eps = 1.000000) [12:58:45 -15016.978727] SLOW spr round 1 (radius: 5) [12:59:42 -15013.481320] SLOW spr round 2 (radius: 5) [13:00:40 -14982.632127] SLOW spr round 3 (radius: 5) [13:01:38 -14958.853896] SLOW spr round 4 (radius: 5) [13:02:34 -14956.278321] SLOW spr round 5 (radius: 5) [13:03:31 -14955.369677] SLOW spr round 6 (radius: 5) [13:04:28 -14955.367328] SLOW spr round 7 (radius: 10) [13:05:29 -14928.286653] SLOW spr round 8 (radius: 5) [13:06:31 -14685.546164] SLOW spr round 9 (radius: 5) [13:07:29 -14430.688863] SLOW spr round 10 (radius: 5) [13:08:27 -14423.449908] SLOW spr round 11 (radius: 5) [13:09:23 -14422.544470] SLOW spr round 12 (radius: 5) [13:10:19 -14422.541322] SLOW spr round 13 (radius: 10) [13:11:18 -14413.014047] SLOW spr round 14 (radius: 5) [13:12:21 -14405.145170] SLOW spr round 15 (radius: 5) [13:13:19 -14403.931113] SLOW spr round 16 (radius: 5) [13:14:17 -14403.456043] SLOW spr round 17 (radius: 5) [13:15:13 -14403.453770] SLOW spr round 18 (radius: 10) [13:16:12 -14402.985008] SLOW spr round 19 (radius: 5) [13:17:13 -14402.981829] SLOW spr round 20 (radius: 10) [13:18:14 -14399.836888] SLOW spr round 21 (radius: 5) [13:19:15 -14399.244480] SLOW spr round 22 (radius: 5) [13:20:12 -14399.244010] SLOW spr round 23 (radius: 10) [13:21:10 -14399.244002] SLOW spr round 24 (radius: 15) [13:22:19 -14350.354965] SLOW spr round 25 (radius: 5) [13:23:23 -14323.170643] SLOW spr round 26 (radius: 5) [13:24:24 -14306.071819] SLOW spr round 27 (radius: 5) [13:25:21 -14306.070765] SLOW spr round 28 (radius: 10) [13:26:20 -14303.867632] SLOW spr round 29 (radius: 5) [13:27:21 -14303.557914] SLOW spr round 30 (radius: 5) [13:28:18 -14303.555988] SLOW spr round 31 (radius: 10) [13:29:17 -14303.555753] SLOW spr round 32 (radius: 15) [13:30:25 -14298.387032] SLOW spr round 33 (radius: 5) [13:31:28 -14297.937793] SLOW spr round 34 (radius: 5) [13:32:26 -14297.937736] SLOW spr round 35 (radius: 10) [13:33:25 -14297.937728] SLOW spr round 36 (radius: 15) [13:34:31 -14297.937725] SLOW spr round 37 (radius: 20) [13:35:44 -14296.186515] SLOW spr round 38 (radius: 5) [13:36:49 -14295.745055] SLOW spr round 39 (radius: 5) [13:37:49 -14295.744011] SLOW spr round 40 (radius: 10) [13:38:47 -14295.743750] SLOW spr round 41 (radius: 15) [13:39:53 -14295.743667] SLOW spr round 42 (radius: 20) [13:41:05 -14295.743641] SLOW spr round 43 (radius: 25) [13:42:25 -14293.685284] SLOW spr round 44 (radius: 5) [13:43:30 -14293.682180] SLOW spr round 45 (radius: 10) [13:44:32 -14293.682138] SLOW spr round 46 (radius: 15) [13:45:38 -14293.682095] SLOW spr round 47 (radius: 20) [13:46:50 -14293.682053] SLOW spr round 48 (radius: 25) [13:48:10 -14293.682010] Model parameter optimization (eps = 0.100000) [13:48:16] ML tree search #12, logLikelihood: -14293.489170 [13:48:16 -74248.438299] Initial branch length optimization [13:48:16 -55588.010090] Model parameter optimization (eps = 10.000000) [13:48:31 -55020.768066] AUTODETECT spr round 1 (radius: 5) [13:49:25 -35869.770747] AUTODETECT spr round 2 (radius: 10) [13:50:22 -25794.229416] AUTODETECT spr round 3 (radius: 15) [13:51:26 -20724.778915] AUTODETECT spr round 4 (radius: 20) [13:52:33 -18387.790864] AUTODETECT spr round 5 (radius: 25) [13:53:40 -17201.486196] SPR radius for FAST iterations: 25 (autodetect) [13:53:40 -17201.486196] Model parameter optimization (eps = 3.000000) [13:53:48 -17174.970011] FAST spr round 1 (radius: 25) [13:54:52 -14078.027748] FAST spr round 2 (radius: 25) [13:55:50 -13955.947277] FAST spr round 3 (radius: 25) [13:56:45 -13944.319991] FAST spr round 4 (radius: 25) [13:57:40 -13941.498677] FAST spr round 5 (radius: 25) [13:58:35 -13939.927717] FAST spr round 6 (radius: 25) [13:59:29 -13939.926884] Model parameter optimization (eps = 1.000000) [13:59:35 -13936.930316] SLOW spr round 1 (radius: 5) [14:00:31 -13934.090610] SLOW spr round 2 (radius: 5) [14:01:28 -13933.502901] SLOW spr round 3 (radius: 5) [14:02:22 -13933.501028] SLOW spr round 4 (radius: 10) [14:03:21 -13931.192068] SLOW spr round 5 (radius: 5) [14:04:22 -13923.666765] SLOW spr round 6 (radius: 5) [14:05:18 -13923.666756] SLOW spr round 7 (radius: 10) [14:06:16 -13923.666753] SLOW spr round 8 (radius: 15) [14:07:22 -13913.696758] SLOW spr round 9 (radius: 5) [14:08:26 -13907.668753] SLOW spr round 10 (radius: 5) [14:09:23 -13907.187252] SLOW spr round 11 (radius: 5) [14:10:19 -13907.186266] SLOW spr round 12 (radius: 10) [14:11:17 -13907.186237] SLOW spr round 13 (radius: 15) [14:12:21 -13905.993856] SLOW spr round 14 (radius: 5) [14:13:24 -13905.730050] SLOW spr round 15 (radius: 5) [14:14:20 -13905.673616] SLOW spr round 16 (radius: 10) [14:15:18 -13905.673299] SLOW spr round 17 (radius: 15) [14:16:22 -13904.286359] SLOW spr round 18 (radius: 5) [14:17:24 -13904.186766] SLOW spr round 19 (radius: 10) [14:18:23 -13897.949985] SLOW spr round 20 (radius: 5) [14:19:23 -13896.719296] SLOW spr round 21 (radius: 5) [14:20:20 -13895.705678] SLOW spr round 22 (radius: 5) [14:21:16 -13895.672564] SLOW spr round 23 (radius: 10) [14:22:13 -13895.671461] SLOW spr round 24 (radius: 15) [14:23:18 -13895.049815] SLOW spr round 25 (radius: 5) [14:24:21 -13894.924497] SLOW spr round 26 (radius: 5) [14:25:18 -13894.924059] SLOW spr round 27 (radius: 10) [14:26:16 -13894.924038] SLOW spr round 28 (radius: 15) [14:27:21 -13894.924036] SLOW spr round 29 (radius: 20) [14:28:32 -13893.119188] SLOW spr round 30 (radius: 5) [14:29:35 -13893.119051] SLOW spr round 31 (radius: 10) [14:30:36 -13893.119032] SLOW spr round 32 (radius: 15) [14:31:40 -13893.119026] SLOW spr round 33 (radius: 20) [14:32:53 -13893.119025] SLOW spr round 34 (radius: 25) [14:34:15 -13849.197587] SLOW spr round 35 (radius: 5) [14:35:21 -13831.343404] SLOW spr round 36 (radius: 5) [14:36:21 -13820.250914] SLOW spr round 37 (radius: 5) [14:37:17 -13820.250611] SLOW spr round 38 (radius: 10) [14:38:15 -13820.250600] SLOW spr round 39 (radius: 15) [14:39:21 -13820.117980] SLOW spr round 40 (radius: 5) [14:40:22 -13820.117952] SLOW spr round 41 (radius: 10) [14:41:21 -13820.117952] SLOW spr round 42 (radius: 15) [14:42:27 -13820.117951] SLOW spr round 43 (radius: 20) [14:43:40 -13820.116722] SLOW spr round 44 (radius: 25) [14:44:59 -13817.565736] SLOW spr round 45 (radius: 5) [14:46:03 -13817.564463] SLOW spr round 46 (radius: 10) [14:47:05 -13817.564462] SLOW spr round 47 (radius: 15) [14:48:10 -13817.564462] SLOW spr round 48 (radius: 20) [14:49:22 -13817.564462] SLOW spr round 49 (radius: 25) [14:50:41 -13817.564462] Model parameter optimization (eps = 0.100000) [14:50:44] ML tree search #13, logLikelihood: -13817.466241 [14:50:44 -73341.559505] Initial branch length optimization [14:50:45 -54739.566892] Model parameter optimization (eps = 10.000000) [14:50:59 -54260.715592] AUTODETECT spr round 1 (radius: 5) [14:51:53 -36037.985993] AUTODETECT spr round 2 (radius: 10) [14:52:53 -25740.469628] AUTODETECT spr round 3 (radius: 15) [14:53:57 -20985.974344] AUTODETECT spr round 4 (radius: 20) [14:55:06 -18160.512251] AUTODETECT spr round 5 (radius: 25) [14:56:15 -17565.766033] SPR radius for FAST iterations: 25 (autodetect) [14:56:15 -17565.766033] Model parameter optimization (eps = 3.000000) [14:56:24 -17530.533755] FAST spr round 1 (radius: 25) [14:57:30 -15201.450346] FAST spr round 2 (radius: 25) [14:58:28 -14344.590999] FAST spr round 3 (radius: 25) [14:59:25 -14156.816945] FAST spr round 4 (radius: 25) [15:00:21 -14115.068424] FAST spr round 5 (radius: 25) [15:01:17 -14115.066299] Model parameter optimization (eps = 1.000000) [15:01:24 -14112.798210] SLOW spr round 1 (radius: 5) [15:02:21 -14056.803615] SLOW spr round 2 (radius: 5) [15:03:18 -14041.261674] SLOW spr round 3 (radius: 5) [15:04:15 -14034.768242] SLOW spr round 4 (radius: 5) [15:05:12 -14034.741753] SLOW spr round 5 (radius: 10) [15:06:12 -13883.191458] SLOW spr round 6 (radius: 5) [15:07:14 -13804.344187] SLOW spr round 7 (radius: 5) [15:08:12 -13797.609782] SLOW spr round 8 (radius: 5) [15:09:09 -13793.625078] SLOW spr round 9 (radius: 5) [15:10:05 -13793.624490] SLOW spr round 10 (radius: 10) [15:11:04 -13766.971963] SLOW spr round 11 (radius: 5) [15:12:06 -13752.514180] SLOW spr round 12 (radius: 5) [15:13:03 -13750.486001] SLOW spr round 13 (radius: 5) [15:14:00 -13747.980555] SLOW spr round 14 (radius: 5) [15:14:56 -13747.979715] SLOW spr round 15 (radius: 10) [15:15:55 -13747.755363] SLOW spr round 16 (radius: 5) [15:16:55 -13747.754355] SLOW spr round 17 (radius: 10) [15:17:54 -13740.972042] SLOW spr round 18 (radius: 5) [15:18:53 -13740.971998] SLOW spr round 19 (radius: 10) [15:19:52 -13740.971975] SLOW spr round 20 (radius: 15) [15:21:00 -13720.613263] SLOW spr round 21 (radius: 5) [15:22:04 -13707.195972] SLOW spr round 22 (radius: 5) [15:23:02 -13706.836776] SLOW spr round 23 (radius: 5) [15:23:58 -13706.482616] SLOW spr round 24 (radius: 5) [15:24:54 -13706.479864] SLOW spr round 25 (radius: 10) [15:25:53 -13705.199466] SLOW spr round 26 (radius: 5) [15:26:53 -13705.198439] SLOW spr round 27 (radius: 10) [15:27:54 -13699.565374] SLOW spr round 28 (radius: 5) [15:28:53 -13699.432448] SLOW spr round 29 (radius: 5) [15:29:49 -13699.431724] SLOW spr round 30 (radius: 10) [15:30:47 -13699.431522] SLOW spr round 31 (radius: 15) [15:31:55 -13698.543642] SLOW spr round 32 (radius: 5) [15:32:59 -13698.543577] SLOW spr round 33 (radius: 10) [15:34:01 -13691.647635] SLOW spr round 34 (radius: 5) [15:35:02 -13691.039894] SLOW spr round 35 (radius: 5) [15:36:00 -13691.038719] SLOW spr round 36 (radius: 10) [15:36:59 -13690.545208] SLOW spr round 37 (radius: 5) [15:37:59 -13690.544808] SLOW spr round 38 (radius: 10) [15:38:58 -13690.544594] SLOW spr round 39 (radius: 15) [15:40:05 -13689.968102] SLOW spr round 40 (radius: 5) [15:41:07 -13689.965948] SLOW spr round 41 (radius: 10) [15:42:06 -13689.965591] SLOW spr round 42 (radius: 15) [15:43:12 -13689.965482] SLOW spr round 43 (radius: 20) [15:44:30 -13399.064673] SLOW spr round 44 (radius: 5) [15:45:34 -13213.495400] SLOW spr round 45 (radius: 5) [15:46:34 -13156.792056] SLOW spr round 46 (radius: 5) [15:47:32 -13155.238613] SLOW spr round 47 (radius: 5) [15:48:28 -13155.135833] SLOW spr round 48 (radius: 5) [15:49:23 -13155.135143] SLOW spr round 49 (radius: 10) [15:50:22 -13152.619546] SLOW spr round 50 (radius: 5) [15:51:22 -13152.569625] SLOW spr round 51 (radius: 10) [15:52:21 -13152.569598] SLOW spr round 52 (radius: 15) [15:53:27 -13150.591398] SLOW spr round 53 (radius: 5) [15:54:30 -13149.652563] SLOW spr round 54 (radius: 5) [15:55:28 -13149.651593] SLOW spr round 55 (radius: 10) [15:56:28 -13149.651432] SLOW spr round 56 (radius: 15) [15:57:34 -13149.651377] SLOW spr round 57 (radius: 20) [15:58:48 -13146.562991] SLOW spr round 58 (radius: 5) [15:59:52 -13146.456551] SLOW spr round 59 (radius: 5) [16:00:51 -13146.456324] SLOW spr round 60 (radius: 10) [16:01:51 -13145.798528] SLOW spr round 61 (radius: 5) [16:02:50 -13145.505126] SLOW spr round 62 (radius: 5) [16:03:47 -13145.502928] SLOW spr round 63 (radius: 10) [16:04:47 -13145.502249] SLOW spr round 64 (radius: 15) [16:05:53 -13143.039939] SLOW spr round 65 (radius: 5) [16:06:55 -13142.969237] SLOW spr round 66 (radius: 10) [16:07:55 -13142.966997] SLOW spr round 67 (radius: 15) [16:09:01 -13142.966766] SLOW spr round 68 (radius: 20) [16:10:17 -13142.966681] SLOW spr round 69 (radius: 25) [16:11:40 -13142.966666] Model parameter optimization (eps = 0.100000) [16:11:47] ML tree search #14, logLikelihood: -13142.798842 [16:11:47 -74146.616983] Initial branch length optimization [16:11:48 -55364.616974] Model parameter optimization (eps = 10.000000) [16:12:00 -54839.638789] AUTODETECT spr round 1 (radius: 5) [16:12:55 -36931.814853] AUTODETECT spr round 2 (radius: 10) [16:13:53 -26703.185822] AUTODETECT spr round 3 (radius: 15) [16:14:55 -22304.902651] AUTODETECT spr round 4 (radius: 20) [16:16:05 -18655.668080] AUTODETECT spr round 5 (radius: 25) [16:17:17 -17615.485880] SPR radius for FAST iterations: 25 (autodetect) [16:17:17 -17615.485880] Model parameter optimization (eps = 3.000000) [16:17:28 -17571.911505] FAST spr round 1 (radius: 25) [16:18:34 -14710.620856] FAST spr round 2 (radius: 25) [16:19:33 -14430.898356] FAST spr round 3 (radius: 25) [16:20:30 -14406.551914] FAST spr round 4 (radius: 25) [16:21:26 -14401.168589] FAST spr round 5 (radius: 25) [16:22:20 -14401.168336] Model parameter optimization (eps = 1.000000) [16:22:25 -14399.762911] SLOW spr round 1 (radius: 5) [16:23:23 -14386.668016] SLOW spr round 2 (radius: 5) [16:24:19 -14386.213707] SLOW spr round 3 (radius: 5) [16:25:15 -14386.110603] SLOW spr round 4 (radius: 5) [16:26:11 -14386.110599] SLOW spr round 5 (radius: 10) [16:27:10 -14383.800251] SLOW spr round 6 (radius: 5) [16:28:12 -14379.167420] SLOW spr round 7 (radius: 5) [16:29:11 -14377.690556] SLOW spr round 8 (radius: 5) [16:30:08 -14377.687669] SLOW spr round 9 (radius: 10) [16:31:06 -14377.687649] SLOW spr round 10 (radius: 15) [16:32:13 -14371.569820] SLOW spr round 11 (radius: 5) [16:33:17 -14370.425373] SLOW spr round 12 (radius: 5) [16:34:16 -14370.425293] SLOW spr round 13 (radius: 10) [16:35:15 -14370.425287] SLOW spr round 14 (radius: 15) [16:36:21 -14370.425283] SLOW spr round 15 (radius: 20) [16:37:37 -14282.727165] SLOW spr round 16 (radius: 5) [16:38:44 -14018.181748] SLOW spr round 17 (radius: 5) [16:39:47 -13794.585666] SLOW spr round 18 (radius: 5) [16:40:46 -13772.507759] SLOW spr round 19 (radius: 5) [16:41:44 -13771.367943] SLOW spr round 20 (radius: 5) [16:42:41 -13771.367714] SLOW spr round 21 (radius: 10) [16:43:39 -13771.367691] SLOW spr round 22 (radius: 15) [16:44:49 -13265.279192] SLOW spr round 23 (radius: 5) [16:45:55 -13169.078943] SLOW spr round 24 (radius: 5) [16:46:55 -13135.335119] SLOW spr round 25 (radius: 5) [16:47:54 -13132.572807] SLOW spr round 26 (radius: 5) [16:48:50 -13132.572177] SLOW spr round 27 (radius: 10) [16:49:50 -13126.969008] SLOW spr round 28 (radius: 5) [16:50:52 -13102.621585] SLOW spr round 29 (radius: 5) [16:51:50 -13096.291257] SLOW spr round 30 (radius: 5) [16:52:46 -13096.284507] SLOW spr round 31 (radius: 10) [16:53:45 -13096.283698] SLOW spr round 32 (radius: 15) [16:54:54 -13059.742313] SLOW spr round 33 (radius: 5) [16:55:58 -13059.548935] SLOW spr round 34 (radius: 5) [16:56:56 -13059.546795] SLOW spr round 35 (radius: 10) [16:57:55 -13039.238616] SLOW spr round 36 (radius: 5) [16:58:55 -13037.774176] SLOW spr round 37 (radius: 5) [16:59:52 -13037.774096] SLOW spr round 38 (radius: 10) [17:00:51 -13037.774088] SLOW spr round 39 (radius: 15) [17:01:57 -13037.774083] SLOW spr round 40 (radius: 20) [17:03:10 -13035.511870] SLOW spr round 41 (radius: 5) [17:04:15 -13034.845999] SLOW spr round 42 (radius: 5) [17:05:15 -13034.034604] SLOW spr round 43 (radius: 5) [17:06:12 -13033.769415] SLOW spr round 44 (radius: 5) [17:07:08 -13033.768176] SLOW spr round 45 (radius: 10) [17:08:06 -13032.468688] SLOW spr round 46 (radius: 5) [17:09:06 -13032.466127] SLOW spr round 47 (radius: 10) [17:10:06 -13027.534779] SLOW spr round 48 (radius: 5) [17:11:05 -13027.532013] SLOW spr round 49 (radius: 10) [17:12:04 -13027.532009] SLOW spr round 50 (radius: 15) [17:13:11 -13026.348194] SLOW spr round 51 (radius: 5) [17:14:14 -13018.066996] SLOW spr round 52 (radius: 5) [17:15:11 -13018.066886] SLOW spr round 53 (radius: 10) [17:16:09 -13016.667948] SLOW spr round 54 (radius: 5) [17:17:08 -13016.667909] SLOW spr round 55 (radius: 10) [17:18:06 -13016.667901] SLOW spr round 56 (radius: 15) [17:19:13 -12992.964497] SLOW spr round 57 (radius: 5) [17:20:15 -12987.861331] SLOW spr round 58 (radius: 5) [17:21:12 -12987.859666] SLOW spr round 59 (radius: 10) [17:22:10 -12987.859227] SLOW spr round 60 (radius: 15) [17:23:15 -12987.859108] SLOW spr round 61 (radius: 20) [17:24:27 -12987.859068] SLOW spr round 62 (radius: 25) [17:25:43 -12987.859050] Model parameter optimization (eps = 0.100000) [17:25:49] ML tree search #15, logLikelihood: -12987.535271 [17:25:49 -73601.369177] Initial branch length optimization [17:25:50 -55172.982696] Model parameter optimization (eps = 10.000000) [17:26:06 -54661.951548] AUTODETECT spr round 1 (radius: 5) [17:27:00 -36581.532215] AUTODETECT spr round 2 (radius: 10) [17:27:58 -27126.714638] AUTODETECT spr round 3 (radius: 15) [17:29:00 -22695.701239] AUTODETECT spr round 4 (radius: 20) [17:30:08 -18472.875202] AUTODETECT spr round 5 (radius: 25) [17:31:17 -16697.577054] SPR radius for FAST iterations: 25 (autodetect) [17:31:17 -16697.577054] Model parameter optimization (eps = 3.000000) [17:31:30 -16648.633741] FAST spr round 1 (radius: 25) [17:32:34 -13590.640192] FAST spr round 2 (radius: 25) [17:33:32 -13194.369082] FAST spr round 3 (radius: 25) [17:34:29 -13092.708706] FAST spr round 4 (radius: 25) [17:35:24 -13087.623275] FAST spr round 5 (radius: 25) [17:36:17 -13087.562059] Model parameter optimization (eps = 1.000000) [17:36:21 -13086.650869] SLOW spr round 1 (radius: 5) [17:37:17 -13077.439117] SLOW spr round 2 (radius: 5) [17:38:13 -13074.104915] SLOW spr round 3 (radius: 5) [17:39:08 -13074.081619] SLOW spr round 4 (radius: 10) [17:40:08 -13044.517812] SLOW spr round 5 (radius: 5) [17:41:07 -13043.236691] SLOW spr round 6 (radius: 5) [17:42:03 -13043.236615] SLOW spr round 7 (radius: 10) [17:43:02 -13035.761475] SLOW spr round 8 (radius: 5) [17:44:02 -13023.104500] SLOW spr round 9 (radius: 5) [17:44:58 -13023.104398] SLOW spr round 10 (radius: 10) [17:45:56 -13023.104361] SLOW spr round 11 (radius: 15) [17:47:02 -13009.085521] SLOW spr round 12 (radius: 5) [17:48:05 -13006.307194] SLOW spr round 13 (radius: 5) [17:49:03 -13004.407387] SLOW spr round 14 (radius: 5) [17:49:59 -13004.406766] SLOW spr round 15 (radius: 10) [17:50:57 -13004.406541] SLOW spr round 16 (radius: 15) [17:52:03 -13003.424841] SLOW spr round 17 (radius: 5) [17:53:05 -13003.422407] SLOW spr round 18 (radius: 10) [17:54:04 -13003.422383] SLOW spr round 19 (radius: 15) [17:55:07 -13001.256936] SLOW spr round 20 (radius: 5) [17:56:08 -13001.256334] SLOW spr round 21 (radius: 10) [17:57:07 -12999.766909] SLOW spr round 22 (radius: 5) [17:58:07 -12999.766435] SLOW spr round 23 (radius: 10) [17:59:05 -12999.766392] SLOW spr round 24 (radius: 15) [18:00:12 -12999.620833] SLOW spr round 25 (radius: 5) [18:01:14 -12999.620751] SLOW spr round 26 (radius: 10) [18:02:13 -12999.620735] SLOW spr round 27 (radius: 15) [18:03:19 -12999.620719] SLOW spr round 28 (radius: 20) [18:04:33 -12996.124745] SLOW spr round 29 (radius: 5) [18:05:38 -12991.115816] SLOW spr round 30 (radius: 5) [18:06:37 -12990.228148] SLOW spr round 31 (radius: 5) [18:07:32 -12990.227842] SLOW spr round 32 (radius: 10) [18:08:30 -12990.227827] SLOW spr round 33 (radius: 15) [18:09:36 -12990.207995] SLOW spr round 34 (radius: 20) [18:10:50 -12989.894593] SLOW spr round 35 (radius: 5) [18:11:53 -12989.894575] SLOW spr round 36 (radius: 10) [18:12:54 -12989.894568] SLOW spr round 37 (radius: 15) [18:13:59 -12989.757605] SLOW spr round 38 (radius: 5) [18:15:02 -12989.757598] SLOW spr round 39 (radius: 10) [18:16:01 -12989.757591] SLOW spr round 40 (radius: 15) [18:17:06 -12989.757585] SLOW spr round 41 (radius: 20) [18:18:20 -12989.757579] SLOW spr round 42 (radius: 25) [18:19:43 -12984.341499] SLOW spr round 43 (radius: 5) [18:20:46 -12984.324680] SLOW spr round 44 (radius: 10) [18:21:48 -12984.324294] SLOW spr round 45 (radius: 15) [18:22:53 -12984.324122] SLOW spr round 46 (radius: 20) [18:24:06 -12984.324044] SLOW spr round 47 (radius: 25) [18:25:28 -12975.609208] SLOW spr round 48 (radius: 5) [18:26:31 -12975.608028] SLOW spr round 49 (radius: 10) [18:27:33 -12975.607872] SLOW spr round 50 (radius: 15) [18:28:37 -12975.607845] SLOW spr round 51 (radius: 20) [18:29:51 -12975.607837] SLOW spr round 52 (radius: 25) [18:31:12 -12975.607833] Model parameter optimization (eps = 0.100000) [18:31:18] ML tree search #16, logLikelihood: -12975.387760 [18:31:19 -73238.483169] Initial branch length optimization [18:31:19 -54676.091007] Model parameter optimization (eps = 10.000000) [18:31:33 -54186.114052] AUTODETECT spr round 1 (radius: 5) [18:32:27 -36524.469905] AUTODETECT spr round 2 (radius: 10) [18:33:25 -26889.214294] AUTODETECT spr round 3 (radius: 15) [18:34:26 -22758.877856] AUTODETECT spr round 4 (radius: 20) [18:35:32 -19787.887260] AUTODETECT spr round 5 (radius: 25) [18:36:40 -18303.813595] SPR radius for FAST iterations: 25 (autodetect) [18:36:40 -18303.813595] Model parameter optimization (eps = 3.000000) [18:36:53 -18255.559841] FAST spr round 1 (radius: 25) [18:37:59 -15037.385302] FAST spr round 2 (radius: 25) [18:38:58 -14828.641722] FAST spr round 3 (radius: 25) [18:39:55 -14799.082942] FAST spr round 4 (radius: 25) [18:40:51 -14797.347986] FAST spr round 5 (radius: 25) [18:41:46 -14796.449703] FAST spr round 6 (radius: 25) [18:42:39 -14796.449423] Model parameter optimization (eps = 1.000000) [18:42:49 -14790.498678] SLOW spr round 1 (radius: 5) [18:43:46 -14787.188484] SLOW spr round 2 (radius: 5) [18:44:43 -14786.610145] SLOW spr round 3 (radius: 5) [18:45:39 -14786.551846] SLOW spr round 4 (radius: 10) [18:46:37 -14741.358018] SLOW spr round 5 (radius: 5) [18:47:39 -14738.818100] SLOW spr round 6 (radius: 5) [18:48:37 -14737.847556] SLOW spr round 7 (radius: 5) [18:49:33 -14737.847482] SLOW spr round 8 (radius: 10) [18:50:32 -14734.047127] SLOW spr round 9 (radius: 5) [18:51:32 -14734.011244] SLOW spr round 10 (radius: 10) [18:52:31 -14733.458787] SLOW spr round 11 (radius: 5) [18:53:32 -14733.450621] SLOW spr round 12 (radius: 10) [18:54:31 -14733.450388] SLOW spr round 13 (radius: 15) [18:55:38 -14733.450326] SLOW spr round 14 (radius: 20) [18:56:53 -14727.157173] SLOW spr round 15 (radius: 5) [18:57:57 -14725.470172] SLOW spr round 16 (radius: 5) [18:58:57 -14725.470128] SLOW spr round 17 (radius: 10) [18:59:55 -14725.469446] SLOW spr round 18 (radius: 15) [19:01:02 -14723.852674] SLOW spr round 19 (radius: 5) [19:02:05 -14723.852672] SLOW spr round 20 (radius: 10) [19:03:06 -14723.751351] SLOW spr round 21 (radius: 5) [19:04:06 -14723.749128] SLOW spr round 22 (radius: 10) [19:05:05 -14723.747418] SLOW spr round 23 (radius: 15) [19:06:11 -14723.746101] SLOW spr round 24 (radius: 20) [19:07:27 -14723.745083] SLOW spr round 25 (radius: 25) [19:08:55 -14719.879322] SLOW spr round 26 (radius: 5) [19:10:00 -14719.409196] SLOW spr round 27 (radius: 5) [19:11:00 -14719.408161] SLOW spr round 28 (radius: 10) [19:11:58 -14719.407390] SLOW spr round 29 (radius: 15) [19:13:05 -14719.406803] SLOW spr round 30 (radius: 20) [19:14:21 -14719.406352] SLOW spr round 31 (radius: 25) [19:15:50 -14718.482424] SLOW spr round 32 (radius: 5) [19:16:54 -14718.481699] SLOW spr round 33 (radius: 10) [19:17:57 -14686.642914] SLOW spr round 34 (radius: 5) [19:18:59 -14682.259063] SLOW spr round 35 (radius: 5) [19:19:57 -14682.227503] SLOW spr round 36 (radius: 10) [19:20:56 -14681.918661] SLOW spr round 37 (radius: 5) [19:21:56 -14681.917183] SLOW spr round 38 (radius: 10) [19:22:55 -14681.916983] SLOW spr round 39 (radius: 15) [19:24:02 -14680.745072] SLOW spr round 40 (radius: 5) [19:25:06 -14680.559677] SLOW spr round 41 (radius: 5) [19:26:05 -14680.558383] SLOW spr round 42 (radius: 10) [19:27:03 -14680.558039] SLOW spr round 43 (radius: 15) [19:28:09 -14680.557825] SLOW spr round 44 (radius: 20) [19:29:24 -14680.557658] SLOW spr round 45 (radius: 25) [19:30:50 -14680.557526] Model parameter optimization (eps = 0.100000) [19:30:57] ML tree search #17, logLikelihood: -14680.094631 [19:30:57 -73517.502313] Initial branch length optimization [19:30:58 -55017.728792] Model parameter optimization (eps = 10.000000) [19:31:13 -54500.402157] AUTODETECT spr round 1 (radius: 5) [19:32:08 -36724.305913] AUTODETECT spr round 2 (radius: 10) [19:33:06 -26471.704698] AUTODETECT spr round 3 (radius: 15) [19:34:08 -21356.157070] AUTODETECT spr round 4 (radius: 20) [19:35:14 -19336.843790] AUTODETECT spr round 5 (radius: 25) [19:36:25 -16509.786308] SPR radius for FAST iterations: 25 (autodetect) [19:36:25 -16509.786308] Model parameter optimization (eps = 3.000000) [19:36:36 -16473.658267] FAST spr round 1 (radius: 25) [19:37:41 -13515.641382] FAST spr round 2 (radius: 25) [19:38:40 -13279.708164] FAST spr round 3 (radius: 25) [19:39:38 -13189.664860] FAST spr round 4 (radius: 25) [19:40:34 -13187.748971] FAST spr round 5 (radius: 25) [19:41:28 -13187.748498] Model parameter optimization (eps = 1.000000) [19:41:36 -13186.113020] SLOW spr round 1 (radius: 5) [19:42:32 -13182.534026] SLOW spr round 2 (radius: 5) [19:43:29 -13179.489711] SLOW spr round 3 (radius: 5) [19:44:25 -13179.489263] SLOW spr round 4 (radius: 10) [19:45:24 -13175.995044] SLOW spr round 5 (radius: 5) [19:46:25 -13174.844401] SLOW spr round 6 (radius: 5) [19:47:22 -13174.842855] SLOW spr round 7 (radius: 10) [19:48:20 -13174.842712] SLOW spr round 8 (radius: 15) [19:49:26 -13171.054280] SLOW spr round 9 (radius: 5) [19:50:29 -13166.839197] SLOW spr round 10 (radius: 5) [19:51:26 -13166.838515] SLOW spr round 11 (radius: 10) [19:52:24 -13166.838482] SLOW spr round 12 (radius: 15) [19:53:30 -13164.369243] SLOW spr round 13 (radius: 5) [19:54:33 -13159.609312] SLOW spr round 14 (radius: 5) [19:55:31 -13158.960624] SLOW spr round 15 (radius: 5) [19:56:26 -13158.960603] SLOW spr round 16 (radius: 10) [19:57:25 -13158.960582] SLOW spr round 17 (radius: 15) [19:58:30 -13158.960562] SLOW spr round 18 (radius: 20) [19:59:43 -13149.084416] SLOW spr round 19 (radius: 5) [20:00:47 -13148.347384] SLOW spr round 20 (radius: 5) [20:01:45 -13148.344357] SLOW spr round 21 (radius: 10) [20:02:44 -13148.343653] SLOW spr round 22 (radius: 15) [20:03:49 -13148.268534] SLOW spr round 23 (radius: 20) [20:05:02 -13146.892419] SLOW spr round 24 (radius: 5) [20:06:05 -13146.892202] SLOW spr round 25 (radius: 10) [20:07:07 -13145.292563] SLOW spr round 26 (radius: 5) [20:08:06 -13144.854825] SLOW spr round 27 (radius: 5) [20:09:03 -13144.718367] SLOW spr round 28 (radius: 5) [20:09:58 -13144.717699] SLOW spr round 29 (radius: 10) [20:10:56 -13144.717683] SLOW spr round 30 (radius: 15) [20:12:02 -13118.197637] SLOW spr round 31 (radius: 5) [20:13:05 -13093.828758] SLOW spr round 32 (radius: 5) [20:14:04 -13092.583228] SLOW spr round 33 (radius: 5) [20:14:59 -13092.581681] SLOW spr round 34 (radius: 10) [20:15:57 -13092.581399] SLOW spr round 35 (radius: 15) [20:17:02 -13092.581272] SLOW spr round 36 (radius: 20) [20:18:15 -13092.581214] SLOW spr round 37 (radius: 25) [20:19:35 -13086.750136] SLOW spr round 38 (radius: 5) [20:20:39 -13086.410675] SLOW spr round 39 (radius: 5) [20:21:37 -13086.408442] SLOW spr round 40 (radius: 10) [20:22:36 -13075.146749] SLOW spr round 41 (radius: 5) [20:23:35 -13075.145786] SLOW spr round 42 (radius: 10) [20:24:33 -13075.145735] SLOW spr round 43 (radius: 15) [20:25:38 -13075.145732] SLOW spr round 44 (radius: 20) [20:26:50 -13075.145731] SLOW spr round 45 (radius: 25) [20:28:11 -13075.145731] Model parameter optimization (eps = 0.100000) [20:28:17] ML tree search #18, logLikelihood: -13075.069879 [20:28:17 -73413.531937] Initial branch length optimization [20:28:18 -55418.482438] Model parameter optimization (eps = 10.000000) [20:28:33 -54884.226522] AUTODETECT spr round 1 (radius: 5) [20:29:28 -36028.607868] AUTODETECT spr round 2 (radius: 10) [20:30:27 -25747.805752] AUTODETECT spr round 3 (radius: 15) [20:31:30 -21645.453773] AUTODETECT spr round 4 (radius: 20) [20:32:38 -18514.327349] AUTODETECT spr round 5 (radius: 25) [20:33:46 -17279.255258] SPR radius for FAST iterations: 25 (autodetect) [20:33:46 -17279.255258] Model parameter optimization (eps = 3.000000) [20:33:54 -17247.546107] FAST spr round 1 (radius: 25) [20:34:57 -14780.046369] FAST spr round 2 (radius: 25) [20:35:54 -13998.607845] FAST spr round 3 (radius: 25) [20:36:51 -13661.034048] FAST spr round 4 (radius: 25) [20:37:47 -13607.571613] FAST spr round 5 (radius: 25) [20:38:44 -13599.098754] FAST spr round 6 (radius: 25) [20:39:40 -13593.091611] FAST spr round 7 (radius: 25) [20:40:35 -13593.090925] Model parameter optimization (eps = 1.000000) [20:40:43 -13590.803468] SLOW spr round 1 (radius: 5) [20:41:39 -13585.994946] SLOW spr round 2 (radius: 5) [20:42:36 -13585.374273] SLOW spr round 3 (radius: 5) [20:43:34 -13584.511549] SLOW spr round 4 (radius: 5) [20:44:30 -13583.308057] SLOW spr round 5 (radius: 5) [20:45:26 -13583.307851] SLOW spr round 6 (radius: 10) [20:46:26 -13496.363082] SLOW spr round 7 (radius: 5) [20:47:28 -13489.272623] SLOW spr round 8 (radius: 5) [20:48:26 -13488.902798] SLOW spr round 9 (radius: 5) [20:49:22 -13488.901800] SLOW spr round 10 (radius: 10) [20:50:22 -13472.368105] SLOW spr round 11 (radius: 5) [20:51:23 -13461.394149] SLOW spr round 12 (radius: 5) [20:52:20 -13461.393679] SLOW spr round 13 (radius: 10) [20:53:19 -13461.393647] SLOW spr round 14 (radius: 15) [20:54:27 -13338.012848] SLOW spr round 15 (radius: 5) [20:55:31 -13163.606289] SLOW spr round 16 (radius: 5) [20:56:30 -13156.783239] SLOW spr round 17 (radius: 5) [20:57:26 -13156.782028] SLOW spr round 18 (radius: 10) [20:58:25 -13152.456599] SLOW spr round 19 (radius: 5) [20:59:25 -13149.856650] SLOW spr round 20 (radius: 5) [21:00:21 -13149.854802] SLOW spr round 21 (radius: 10) [21:01:19 -13149.561735] SLOW spr round 22 (radius: 5) [21:02:19 -13149.561635] SLOW spr round 23 (radius: 10) [21:03:19 -13146.681690] SLOW spr round 24 (radius: 5) [21:04:19 -13145.596744] SLOW spr round 25 (radius: 5) [21:05:15 -13145.595736] SLOW spr round 26 (radius: 10) [21:06:14 -13145.595603] SLOW spr round 27 (radius: 15) [21:07:20 -13145.595518] SLOW spr round 28 (radius: 20) [21:08:34 -13128.151268] SLOW spr round 29 (radius: 5) [21:09:39 -13106.544751] SLOW spr round 30 (radius: 5) [21:10:38 -13104.819815] SLOW spr round 31 (radius: 5) [21:11:34 -13104.819716] SLOW spr round 32 (radius: 10) [21:12:33 -13102.729763] SLOW spr round 33 (radius: 5) [21:13:33 -13102.287099] SLOW spr round 34 (radius: 5) [21:14:29 -13102.285922] SLOW spr round 35 (radius: 10) [21:15:28 -13102.285655] SLOW spr round 36 (radius: 15) [21:16:35 -13101.760626] SLOW spr round 37 (radius: 5) [21:17:37 -13101.758926] SLOW spr round 38 (radius: 10) [21:18:38 -13101.758642] SLOW spr round 39 (radius: 15) [21:19:44 -13101.758559] SLOW spr round 40 (radius: 20) [21:20:59 -13101.593493] SLOW spr round 41 (radius: 5) [21:22:03 -13101.593401] SLOW spr round 42 (radius: 10) [21:23:05 -13101.593350] SLOW spr round 43 (radius: 15) [21:24:13 -13100.161450] SLOW spr round 44 (radius: 5) [21:25:15 -13100.161276] SLOW spr round 45 (radius: 10) [21:26:15 -13100.161226] SLOW spr round 46 (radius: 15) [21:27:23 -13099.888784] SLOW spr round 47 (radius: 5) [21:28:25 -13099.815457] SLOW spr round 48 (radius: 10) [21:29:26 -13099.815414] SLOW spr round 49 (radius: 15) [21:30:33 -13097.677440] SLOW spr round 50 (radius: 5) [21:31:37 -13093.245885] SLOW spr round 51 (radius: 5) [21:32:34 -13093.188412] SLOW spr round 52 (radius: 10) [21:33:33 -13093.187673] SLOW spr round 53 (radius: 15) [21:34:40 -13093.187624] SLOW spr round 54 (radius: 20) [21:35:58 -13092.474012] SLOW spr round 55 (radius: 5) [21:37:01 -13092.473988] SLOW spr round 56 (radius: 10) [21:38:03 -13092.473965] SLOW spr round 57 (radius: 15) [21:39:10 -13092.473942] SLOW spr round 58 (radius: 20) [21:40:27 -13092.473921] SLOW spr round 59 (radius: 25) [21:41:53 -13084.099309] SLOW spr round 60 (radius: 5) [21:42:58 -13080.865647] SLOW spr round 61 (radius: 5) [21:43:58 -13058.236435] SLOW spr round 62 (radius: 5) [21:44:54 -13058.236413] SLOW spr round 63 (radius: 10) [21:45:53 -13058.236401] SLOW spr round 64 (radius: 15) [21:47:00 -13058.236390] SLOW spr round 65 (radius: 20) [21:48:17 -13058.236204] SLOW spr round 66 (radius: 25) [21:49:44 -13058.236194] Model parameter optimization (eps = 0.100000) [21:49:48] ML tree search #19, logLikelihood: -13058.084277 [21:49:48 -73701.668910] Initial branch length optimization [21:49:49 -54959.951358] Model parameter optimization (eps = 10.000000) [21:50:01 -54433.566121] AUTODETECT spr round 1 (radius: 5) [21:50:56 -38232.642309] AUTODETECT spr round 2 (radius: 10) [21:51:54 -27856.662255] AUTODETECT spr round 3 (radius: 15) [21:52:56 -22760.057481] AUTODETECT spr round 4 (radius: 20) [21:54:04 -18858.208119] AUTODETECT spr round 5 (radius: 25) [21:55:15 -17441.494419] SPR radius for FAST iterations: 25 (autodetect) [21:55:15 -17441.494419] Model parameter optimization (eps = 3.000000) [21:55:27 -17389.779643] FAST spr round 1 (radius: 25) [21:56:33 -15097.526964] FAST spr round 2 (radius: 25) [21:57:31 -14891.998389] FAST spr round 3 (radius: 25) [21:58:26 -14879.263734] FAST spr round 4 (radius: 25) [21:59:20 -14876.925455] FAST spr round 5 (radius: 25) [22:00:13 -14876.797755] FAST spr round 6 (radius: 25) [22:01:06 -14876.796759] Model parameter optimization (eps = 1.000000) [22:01:11 -14874.713791] SLOW spr round 1 (radius: 5) [22:02:07 -14869.498225] SLOW spr round 2 (radius: 5) [22:03:03 -14869.255246] SLOW spr round 3 (radius: 5) [22:03:58 -14869.254753] SLOW spr round 4 (radius: 10) [22:04:55 -14868.865895] SLOW spr round 5 (radius: 5) [22:05:54 -14868.639702] SLOW spr round 6 (radius: 5) [22:06:50 -14868.639702] SLOW spr round 7 (radius: 10) [22:07:47 -14868.639701] SLOW spr round 8 (radius: 15) [22:08:53 -14858.089682] SLOW spr round 9 (radius: 5) [22:09:55 -14856.574902] SLOW spr round 10 (radius: 5) [22:10:53 -14856.574365] SLOW spr round 11 (radius: 10) [22:11:50 -14856.522568] SLOW spr round 12 (radius: 15) [22:12:55 -14856.522036] SLOW spr round 13 (radius: 20) [22:14:05 -14852.470634] SLOW spr round 14 (radius: 5) [22:15:09 -14852.382933] SLOW spr round 15 (radius: 10) [22:16:09 -14851.090544] SLOW spr round 16 (radius: 5) [22:17:09 -14851.090240] SLOW spr round 17 (radius: 10) [22:18:07 -14851.090190] SLOW spr round 18 (radius: 15) [22:19:11 -14851.090181] SLOW spr round 19 (radius: 20) [22:20:22 -14850.662851] SLOW spr round 20 (radius: 5) [22:21:25 -14850.660433] SLOW spr round 21 (radius: 10) [22:22:26 -14850.660432] SLOW spr round 22 (radius: 15) [22:23:29 -14850.660432] SLOW spr round 23 (radius: 20) [22:24:39 -14850.660429] SLOW spr round 24 (radius: 25) [22:26:02 -14839.527077] SLOW spr round 25 (radius: 5) [22:27:05 -14839.466480] SLOW spr round 26 (radius: 10) [22:28:06 -14839.035739] SLOW spr round 27 (radius: 5) [22:29:06 -14838.806054] SLOW spr round 28 (radius: 5) [22:30:02 -14838.806053] SLOW spr round 29 (radius: 10) [22:30:59 -14838.806053] SLOW spr round 30 (radius: 15) [22:32:04 -14838.806053] SLOW spr round 31 (radius: 20) [22:33:14 -14838.806053] SLOW spr round 32 (radius: 25) [22:34:35 -14838.806053] Model parameter optimization (eps = 0.100000) [22:34:38] ML tree search #20, logLikelihood: -14838.677188 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.162567,0.765758) (0.135030,0.602202) (0.567455,0.990671) (0.134948,1.719454) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -12957.378711 AIC score: 29852.757422 / AICc score: 7787712.757422 / BIC score: 33024.654792 Free parameters (model + branch lengths): 1969 WARNING: Number of free parameters (K=1969) is larger than alignment size (n=37). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 601 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P27986/3_mltree/P27986.raxml.log Analysis started: 01-Jul-2021 01:57:24 / finished: 02-Jul-2021 00:32:03 Elapsed time: 81279.225 seconds Consumed energy: 6544.559 Wh (= 33 km in an electric car, or 164 km with an e-scooter!)